|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068049 ID=TCONS_00068049|Name=TCONS_00068049|organism=Clytia hemisphaerica|type=transcript|length=2721bpRun BLAST on NCBI transcript from alignment at scaffold_478:596119..614299- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068049 ID=TCONS_00068049|Name=TCONS_00068049|organism=Clytia hemisphaerica|type=transcript|length=18181bp|location=Sequence derived from alignment at scaffold_478:596119..614299- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00068049 vs. Swiss-Prot (Human)
Match: AAPK2 (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Homo sapiens GN=PRKAA2 PE=1 SV=2) HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0 Identity = 309/557 (55.48%), Postives = 376/557 (67.50%), Query Frame = 2
Query: 35 MEKRTQAQPQLKIGHYVLGKNLGAGTFGKVKVGKHYITGHKVAIKILNRQKIKTLEVVGKIRREIQFLKLFRHPHIIKLYQVISTPSDIFMVMEFVSGGELFDYILKHGKLSEREARKFFQQIISGVDYCHRHMIVHRDLKPENLLLDSHNNVKIADFGLSNMMHDGEFLKTSCGSPNYAAPEVIKGSLYAGPEVDIWSCGVILYALLCGSLPFDDDHIPTLFKKIRSGVFNIPNHLSSLIASLLTAMLQVDSIKRITIEQIKQHDWFKIDLPGYLFPSADN-QGNNFDDEVINEICEKFGVDESDVRLQLSTGDRHDQLVVAYDLILDNRRINAEARAAH--GMVPVMS---------PSGFKVNENIFXXXXXXXXXXXXXXXXXAGKKRTSLRSGKRPRWHLGIRSQSRPQDIMAELYKAMSKMDFEWKCENTFCIRARXXXXXXXXXXXXXLQLYQVDQKSFLLDFKSLAPLDFEDNXXXXXXXXXXXXXXXXXXXLNEPQ-----------------------------EPGTCHYVMEFFEMCSDLIIALA 1582
M ++ + ++KIGHYVLG LG GTFGKVK+G+H +TGHKVA+KILNRQKI++L+VVGKI+REIQ LKLFRHPHIIKLYQVISTP+D FMVME+VSGGELFDYI KHG++ E EAR+ FQQI+S VDYCHRHM+VHRDLKPEN+LLD+H N KIADFGLSNMM DGEFL+TSCGSPNYAAPEVI G LYAGPEVDIWSCGVILYALLCG+LPFDD+H+PTLFKKIR GVF IP +L+ +A+LL MLQVD +KR TI+ I++H+WFK DLP YLFP + N DDE + E+CEKF ES+V L +GD DQL VAY LI+DNRRI +A + P S P G K + P + L K SL + K+ +WHLGIRSQS+P DIMAE+Y+AM ++DFEWK N + +R R+K Y K+ LQLY VD +S+LLDFKS+ +D S S S + L+ P+ P + M+FFEMC+ LI LA
Sbjct: 1 MAEKQKHDGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLPSYLFPEDPSYDANVIDDEAVKEVCEKFECTESEVMNSLYSGDPQDQLAVAYHLIIDNRRIMNQASEFYLASSPPSGSFMDDSAMHIPPGLKPHPERMPPLIADSPKARCPLDALNTTKPKSL-AVKKAKWHLGIRSQSKPYDIMAEVYRAMKQLDFEWKVVNAYHLRVRRKNPVTGNYVKMSLQLYLVDNRSYLLDFKSI-----DDEVVEQRSGSSTPQRSCSAAGLHRPRSSFDSTTAESHSLSGSLTGSLTGSTLSSVSPRLGSHTMDFFEMCASLITTLA 551 The following BLAST results are available for this feature:
BLAST of TCONS_00068049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.