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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067992 ID=TCONS_00067992|Name=TCONS_00067992|organism=Clytia hemisphaerica|type=transcript|length=2623bp
GtttttgataacaaaaatcataataaaaGATTTCCTTATCAGactgtttt
tctttgattttttgacattaaaggttttgtttttaaataagagtgatatc
atttgcttactcatcaattctaattcacaagctttttcgcattggattga
cacgtatgtggagcaagatttgtcagaaagaggaaaagaaaaacattttt
tgcttacatcatcacaatataacaatagcaagactgtctgatatgaaata
tgtgtctgaaatgaaacgaaaacacttatgtaaaaacaaaacctttgatA
TAAATAGCTGTATGATAAGTCCTTTAATTCAGATTAAAACTAAGAATGGC
AGctgcaaattttgaaaaagaaacaacTTTTTCTACTTTTCAAGAGCTTT
TTGAATTAGATGAACGTTTTCGAAAAGCATTACATGCtggccttcaaaaa
tttttatggAATGGAACTGCCACAAAGAATCATCCAAATGCAAAGAAGAA
TATTCAGCTTGCTGGCAGTGCTATAGAGGGTGCAACTTTGGCAAGagttt
ttcaaaagaatgaTGAGTTTCCAAGTGGTTTGAATCAAGAAATTGAAGTG
GATATCGAATATTGTCTCTTTCAGATACCAGAGGATAAGAAGCATTTGGT
AAAAGAAATCGATTCTGAACAGGGCTTTGTTCAAATTGAGTTTACAAAAG
ATCTAATCAATGATAGCATATCAATTGGCTGGAATGTTGACAAAGaagat
tttgaagaatattATGGAGAATTAATTTCACTCGGTGGATTTTTAAAGCC
ATTTAGAGCGAAACAAATTGCTCAACAGAAAGTAGCATTTCAAGATGTCG
ACAACGAATACCCTTTGCTTTTTGGTGCAATGTTTGGTGTTCCGAAATGT
GATATTAAAGTTGAGAATCTCGCTTGCGAAGTCACCAAATCCTCTGTCGC
GTCCGAAATCCTTGTTAAGGTAAAAGAGGAACCAAagctcaaaatttctt
ttgatactgTCATTATTGTGAAATTGGCCTGGCAGTCTCAAATTGCCAAG
GACTGGTTGAGGAGACCAAAAAACTGGCCATCATACGCTATTTGTGAGCA
ACTCATGAAATCTGGAAGTTATGTTATTCCCAAACCGTCAAAGAAAAACA
AGCTACATCTGGATACCACTGAAATGCGTTATGCTTTCTCTCAAACAGAG
CGCGAACTTGTTAAATTACGCAGTcagaatcaaaattttgtttacatGGT
TTTTAAAATCATGTTTGTGAAATGGATCAAGCCAATTGATACAGAAGAAA
TCAGTTCTTTCATTGCCAAGACTGCAATGTTTTGGATTGCTGAGGAATTT
CCACCTGGAGATTCTGTTTGGGATGTTTTTGATGAAGATTCCTTACTTTT
ACCattgcaaattttattttcatggtTGTTGAGTACCTTTGAGAGTGGTT
TCGTTCCATATTATTTTAATGTGAAGATCAATATCATTGCTGGAGTATCA
GGAATGACCAAGGAGTTAGTTATCACCAAAATGGAGGAAATTTTGAATGA
TATGAGACAGTTCTTACTATCAGACATGCATCAAGAACTTGAACTCTGCA
AAGATGTTACGATCAAGGTAGACAATTTTGGTCAAATATTTACaatgata
aaaaacaaagactacATAAGTCTTTTACAACATCTTCCACCCGAATTGTG
TTTGGACGCCCTTAAacatttcaatgaaaatccTAGAAAATATGAAAGAT
ATACTGCTGCAACAGAAGAAAATGATAAAGAAagttttaatgaaaatgta
aaTGTTGTTGTTGAAAATGAAAACTGCTCCACAACTCAAGAAATTGAATA
TGaagtaaaagaatttttcaagaaatttcatcAATAAAACTTTACTTTGG
ACGTTTGTTATCATTTGAGCATCGAACAACAATCCCTTACAGGGTGGTGG
TGTATTTTTGCTCTTGAAGCCGTAAAAATAAATGTCAAAAACATTACACT
CTGAGTGTGTGTGCAGACTTCACGCTtgtagtggggtcgtttagcataat
ttacgggaaaacaataagatctagctgaaactttctccagaccttctcta
taggatggttatgcctcaggaaaaattcccctaaaatcccactggtggaa
catcccttttttgggaaatttctttttttcccaggcaaaaccctaagggc
gaaatttttagaaaatttcaaactcattttcagacattatcaagtatacc
attcgaaagctctcgaaaaactatatagacgacttttaaacgggtatagc
cgatttcattacctaactcaagataattcacgcagaagatgctatttatg
gtcaattttgaccaaagtgtggcGAANTCAAGGTAGACAATTTTGGTCAA
ATATTTACaatgataaaaaacaaagactacATAGGTCTTTTACAACATCT
TCCACCCGAATTGTGTTTGGACGCCCTTAAACATTACAATGAACATCCTA
GAAAATATGAAAGATATACTGCTGCAACAGAAGaaaatgataaagaaaat
tttgatgaaaatgtaaaTGTTGTTGTTGAAAATGAAAACTGCTCCCTAac
tcaagaaattgaaaatgaagtaa Run BLAST on NCBI transcript from alignment at scaffold_478:243603..246623+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067992 ID=TCONS_00067992|Name=TCONS_00067992|organism=Clytia hemisphaerica|type=transcript|length=3021bp|location=Sequence derived from alignment at scaffold_478:243603..246623+ (Clytia hemisphaerica)
GtttttgataacaaaaatcataataaaaGATTTCCTTATCAGactgtttt
tctttgattttttgacattaaaggttttgtttttaaataagagtgatatc
atttgcttactcatcaattctaattcacaagctttttcgcattggattga
cacgtatgtggagcaagatttgtcagaaagaggaaaagaaaaacattttt
tgcttacatcatcacaatataacaatagcaagactgtctgatatgaaata
tgtgtctgaaatgaaacgaaaacacttatgtaaaaacaaaacctttgatA
TAAATAGCTGTATGATAAGTCCTTTAATTCAGATTAAAACTAAGAATGGC
AGctgcaaattttgaaaaagaaacaacTTTTTCTACTTTTCAAGAGCTTT
TTGAATTAGATGAACGTTTTCGAAAAGCATTACATGCtggccttcaaaaa
tttttatggAATGGAACTGCCACAAAGAATCATCCAAATGCAAAGAAGAA
TATTCAGCTTGCTGGCAGTGCTATAGAGGGTGCAACTTTGGCAAGagttt
ttcaaaagaatgaTGAGTTTCCAAGTGGTTTGAATCAAGAAATTGAAGTG
GATATCGAATATTGTCTCTTTCAGGTATAAACTTgcatatttttaattat
tttaaaagCTCTTTAAATGTCTAATTTCACTACTTGCTTTCATTTATTAA
TTCTTTCTATTTCAATCTTCCATCTTCCCTCctagcggtttgcgtgaatg
catgaatgGGCATTTTCTTCCATATATTATAAAAAGCAAACAAATTACCA
TAAATAACAttattttaaagtattttttagttctttatAAGGATTCATTC
CAAGTGTtcacaatatattgaaaattataaaTACAACTAAATTACTAGca
ctattttcaatattttaataaTATGAAGGGTAGATGTGGCACttagaatt
tttggaaaataattttataaataaacCTTTGAAAATTAGTTAACTAtgtt
tattttgcaaatttttgtttAGATACCAGAGGATAAGAAGCATTTGGTAA
AAGAAATCGATTCTGAACAGGGCTTTGTTCAAATTGAGTTTACAAAAGAT
CTAATCAATGATAGCATATCAATTGGCTGGAATGTTGACAAAGaagattt
tgaagaatattATGGAGAATTAATTTCACTCGGTGGATTTTTAAAGCCAT
TTAGAGCGAAACAAATTGCTCAACAGAAAGTAGCATTTCAAGATGTCGAC
AACGAATACCCTTTGCTTTTTGGTGCAATGTTTGGTGTTCCGAAATGTGA
TATTAAAGTTGAGAATCTCGCTTGCGAAGTCACCAAATCCTCTGTCGCGT
CCGAAATCCTTGTTAAGGTAAAAGAGGAACCAAagctcaaaatttctttt
gatactgTCATTATTGTGAAATTGGCCTGGCAGTCTCAAATTGCCAAGGA
CTGGTTGAGGAGACCAAAAAACTGGCCATCATACGCTATTTGTGAGCAAC
TCATGAAATCTGGAAGTTATGTTATTCCCAAACCGTCAAAGAAAAACAAG
CTACATCTGGATACCACTGAAATGCGTTATGCTTTCTCTCAAACAGAGCG
CGAACTTGTTAAATTACGCAGTcagaatcaaaattttgtttacatGGTTT
TTAAAATCATGTTTGTGAAATGGATCAAGCCAATTGATACAGAAGAAATC
AGTTCTTTCATTGCCAAGACTGCAATGTTTTGGATTGCTGAGGAATTTCC
ACCTGGAGATTCTGTTTGGGATGTTTTTGATGAAGATTCCTTACTTTTAC
CattgcaaattttattttcatggtTGTTGAGTACCTTTGAGAGTGGTTTC
GTTCCATATTATTTTAATGTGAAGATCAATATCATTGCTGGAGTATCAGG
AATGACCAAGGAGTTAGTTATCACCAAAATGGAGGAAATTTTGAATGATA
TGAGACAGTTCTTACTATCAGACATGCATCAAGAACTTGAACTCTGCAAA
GATGTTACGATCAAGGTAGACAATTTTGGTCAAATATTTACaatgataaa
aaacaaagactacATAAGTCTTTTACAACATCTTCCACCCGAATTGTGTT
TGGACGCCCTTAAacatttcaatgaaaatccTAGAAAATATGAAAGATAT
ACTGCTGCAACAGAAGAAAATGATAAAGAAagttttaatgaaaatgtaaa
TGTTGTTGTTGAAAATGAAAACTGCTCCACAACTCAAGAAATTGAATATG
aagtaaaagaatttttcaagaaatttcatcAATAAAACTTTACTTTGGAC
GTTTGTTATCATTTGAGCATCGAACAACAATCCCTTACAGGGTGGTGGTG
TATTTTTGCTCTTGAAGCCGTAAAAATAAATGTCAAAAACATTACACTCT
GAGTGTGTGTGCAGACTTCACGCTtgtagtggggtcgtttagcataattt
acgggaaaacaataagatctagctgaaactttctccagaccttctctata
ggatggttatgcctcaggaaaaattcccctaaaatcccactggtggaaca
tcccttttttgggaaatttctttttttcccaggcaaaaccctaagggcga
aatttttagaaaatttcaaactcattttcagacattatcaagtataccat
tcgaaagctctcgaaaaactatatagacgacttttaaacgggtatagccg
atttcattacctaactcaagataattcacgcagaagatgctatttatggt
caattttgaccaaagtgtggcGAANTCAAGGTAGACAATTTTGGTCAAAT
ATTTACaatgataaaaaacaaagactacATAGGTCTTTTACAACATCTTC
CACCCGAATTGTGTTTGGACGCCCTTAAACATTACAATGAACATCCTAGA
AAATATGAAAGATATACTGCTGCAACAGAAGaaaatgataaagaaaattt
tgatgaaaatgtaaaTGTTGTTGTTGAAAATGAAAACTGCTCCCTAactc
aagaaattgaaaatgaagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067992-exon-scaffold_478-1491911889:243603..244226 | TCONS_00067992-exon-scaffold_478-1491911889:243603..244226 | Clytia hemisphaerica | exon |
| TCONS_00067992-exon-scaffold_478-1510915933:243603..244226 | TCONS_00067992-exon-scaffold_478-1510915933:243603..244226 | Clytia hemisphaerica | exon |
| TCONS_00067992-exon-scaffold_478-1575043694:243603..244226 | TCONS_00067992-exon-scaffold_478-1575043694:243603..244226 | Clytia hemisphaerica | exon |
| TCONS_00067992-exon-scaffold_478-1491911889:244625..246623 | TCONS_00067992-exon-scaffold_478-1491911889:244625..246623 | Clytia hemisphaerica | exon |
| TCONS_00067992-exon-scaffold_478-1510915933:244625..246623 | TCONS_00067992-exon-scaffold_478-1510915933:244625..246623 | Clytia hemisphaerica | exon |
| TCONS_00067992-exon-scaffold_478-1575043694:244625..246623 | TCONS_00067992-exon-scaffold_478-1575043694:244625..246623 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:243603..246623 + |
Blast
The following BLAST results are available for this feature:
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