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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067988 ID=TCONS_00067988|Name=TCONS_00067988|organism=Clytia hemisphaerica|type=transcript|length=1882bp
aaatgtttttaatcaaaacaagtttttgtattattatttttgttctAGTA
GTATGATCAATTAAcaagatttttcataaaaaggaTGCTTATAAAGGTTT
TGTCTGCTATATGTTTTATGGCATTGGCTGGTGAAGTAAGAAACAAGATG
GCTGTGTCAAGTTctacaaatgataaaaaatttgctttgctgcaagaatt
ttttaatttagatGAGAGATTTCGTGAAACTCTTCATGCtggccttcaaa
aatttttatggAATGGAAGTGTCACAAGGAAACACCCAAATGCAAAGAAA
AATATCCAGCTTGCTGGCAGTGCTATAGAGGGTGCATCTTTGGCAAGagt
ttttcaaaagaatgaTGAGTTTCCAAGTGGTTTGAACCAAGAGATAGAAG
TGGACATTGAGTTCATGTATCTCAAGTTACCAGAATCAAAGCAAGATCTT
ATCCAAGATATTGAGGCAGATCAAGGATACATAAAAATGAAGCTTCAAGA
AGATCTGTTTGATGACATTAAAAGCATTGGTTGGAATCTTGACCAATATG
AATTTGATGAAGTTTACAAAGAGGTGAAATCTCCAGAAGGCTATTTTCTA
CcgttcaaaatcaaatcaattgcTAAGAAGAAAGTAGCTTATCGTGATGA
GAAACAAGGACTCCGTTTGATGGCTGCTGCGGTTTATAATGTTAAGAAGA
GAAATGTGGACTTCAAGCCAATTGCTAATGAGATCACAAAATCTTCTGTT
TCCTCAGAATACGTTTTAGAAGTGAAGGGTgaaagaaaacttaaaatttc
ttttgatactgTTGTGGTTGTTGGGCTATCATGGCATTCTCAAATAGGCA
ACGATTGGTTGAATAGACCTAAAAACTGGCCATCGCATGCTGTCTGTCAA
CAAATTTTGGGTTCTAGTAGTGTTGTCATTGCCAAACCATCAAGAAAAAA
TAAGCTTGACCCAAACACTACTGAAATGCGCTATGCATATTCTCAAACAG
AGCGCAAACTTGTTAAATTACGCAGTCagaatcaaaattttgtgtaCATG
GTTTTTAAAATCATGTTTGTGAAATGGATCAAGCCAATTGATACAGAAGA
AATCAGTTCTTTCATTGCCAAAACTGCAATGTTTTGGATTGCTGAGGAAT
TTCCACCTGAAAATTCTATGTGGGATGTTGTGGATAGTGAGTGCTTGGTA
ACTCCCTTGAAGAAACTATTTTCTTGGCTGCTTGAAGCCTTCAGTAAAGA
TACAATGCCGTActacttcaatgaaaagtccaATATTATTGAGGGGATGT
CAGATCAAACAAAGCAACTTATCATTACAAACATTGGAGAAGTTTTGGGG
GATTTACAACAATTTATACCCTCAGATATTGACCGAGAGCTTGCTGTTGC
TAAAGATATCTTCATTTGGGCAGAAAAGATGAACAAAATTTTAACATTGA
TAAAGGACAAGAATTATAAAGAAGCGTTGAAGATACTaccaaaagaattg
attttgGATATTATTGCTTTTTATTTTGCTGAAATTGGCTGGGATGTCAT
CCATGAGAAAATTGAGAAAGAACTTGATAGGTTCACAGAGCGAGCTGAGA
AAGAAATTGACCGCAGTTcaaagaaagttgaaaatgagGTTGACCGTGTT
AAAGAAAGCGTGGTGAGTGAAGTCCAGAGAAGTgggaaaaaattgaacat
gaACTCAAACGATTAAAACGTAGATTCAGACGATAAAGTCTCTTTGCTTT
CACAATNGGGAActattttttgcgggaactaatttttgcggttcgcagtt
caagatttaatatttaatatttacgggaacttaattttgcagatttctca
cttgaaagaaaattagagccgtACTGTGAATT Run BLAST on NCBI transcript from alignment at scaffold_478:239339..242372+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067988 ID=TCONS_00067988|Name=TCONS_00067988|organism=Clytia hemisphaerica|type=transcript|length=3034bp|location=Sequence derived from alignment at scaffold_478:239339..242372+ (Clytia hemisphaerica)
aaatgtttttaatcaaaacaagtttttgtattattatttttgttctAGTA
GTATGATCAATTAAcaagatttttcataaaaaggaTGCTTATAAAGGTTT
TGTCTGCTATATGTTTTATGGCATTGGCTGGTGAAGTAAGAAACAAGATG
GCTGTGTCAAGTTctacaaatgataaaaaatttgctttgctgcaagaatt
ttttaatttagatGAGAGATTTCGTGAAACTCTTCATGCtggccttcaaa
aatttttatggAATGGAAGTGTCACAAGGAAACACCCAAATGCAAAGAAA
AATATCCAGCTTGCTGGCAGTGCTATAGAGGGTGCATCTTTGGCAAGagt
ttttcaaaagaatgaTGAGTTTCCAAGTGGTTTGAACCAAGAGATAGAAG
TGGACATTGAGTTCATGTATCTCAAGGTATACTAACACAtctttttcaat
aaactttacTTCACTTCATTTCAAGGAGAAATGACCATGTGGTTAAAAGT
GTAAGCATTACACACCATAGGCTTACAGTTTGAATCCCTGCTCCTTCCAA
TGTGTTGTTCAGTTCATATATAGCCCATTCAGCTGGCCATTGACCTTGTG
AAAACAATCACAAGAcagtctaaaagtcctagattccTGGGCTCTCTACG
TAAAATATTGACTATATTGATGCAAATCTTcttatttttacctttttact
atttttttcaatttagaaaAGATTCCATCTCCATTTTATAATGCAATGGA
ATGTATTAACATAGTTCCTCCCTCTCTTTCTTTAGGGGGTGACACCttct
gaaaaaatgaagaaggagggggatcagaaatttgCATGAAAAAGGCGGAG
gatgtagattattttcaagcactgttacgaaattttgttttttatgaaat
gtaGTTTTCTGTTGAGTAGTTTGAGTCAAAAAGatgaaagaagtttatta
tttcgctCGCTCTCTCTCTAAAGATAATTCACATATATACATTTGTTAGC
TATCTTAAAATCTTAGgtaattgacatttttaaaggttagggTGGATGCC
AAGAggggggtcagacccctttTCGTACTATGATTGAAATAAAACTATtg
tttttaacaataaaaagcaACGAAGGGCTACTGGgttttttatacaaact
aaatgtaaattaattaGATTAATGTCAGGATTTTCGTCAAGTTTAGTTTG
AAATAAacattttgaattcatttttatttaaggaccattttgattctttt
tgttttgacgtttcatattcttaaaaaataaaaaaacttaataTACTATG
TGTTTGTTTCTAGTTACCAGAATCAAAGCAAGATCTTATCCAAGATATTG
AGGCAGATCAAGGATACATAAAAATGAAGCTTCAAGAAGATCTGTTTGAT
GACATTAAAAGCATTGGTTGGAATCTTGACCAATATGAATTTGATGAAGT
TTACAAAGAGGTGAAATCTCCAGAAGGCTATTTTCTACcgttcaaaatca
aatcaattgcTAAGAAGAAAGTAGCTTATCGTGATGAGAAACAAGGACTC
CGTTTGATGGCTGCTGCGGTTTATAATGTTAAGAAGAGAAATGTGGACTT
CAAGCCAATTGCTAATGAGATCACAAAATCTTCTGTTTCCTCAGAATACG
TTTTAGAAGTGAAGGGTgaaagaaaacttaaaatttcttttgatactgTT
GTGGTTGTTGGGCTATCATGGCATTCTCAAATAGGCAACGATTGGTTGAA
TAGACCTAAAAACTGGCCATCGCATGCTGTCTGTCAACAAATTTTGGGTT
CTAGTAGTGTTGTCATTGCCAAACCATCAAGAAAAAATAAGCTTGACCCA
AACACTACTGAAATGCGCTATGCATATTCTCAAACAGAGCGCAAACTTGT
TAAATTACGCAGTCagaatcaaaattttgtgtaCATGGTTTTTAAAATCA
TGTTTGTGAAATGGATCAAGCCAATTGATACAGAAGAAATCAGTTCTTTC
ATTGCCAAAACTGCAATGTTTTGGATTGCTGAGGAATTTCCACCTGAAAA
TTCTATGTGGGATGTTGTGGATAGTGAGTGCTTGGTAACTCCCTTGAAGA
AACTATTTTCTTGGCTGCTTGAAGCCTTCAGTAAAGATACAATGCCGTAc
tacttcaatgaaaagtccaATATTATTGAGGGGATGTCAGATCAAACAAA
GCAACTTATCATTACAAACATTGGAGAAGTTTTGGGGGATTTACAACAAT
TTATACCCTCAGATATTGACCGAGAGCTTGCTGTTGCTAAAGATATCTTC
ATTTGGGCAGAAAAGATGAACAAAATTTTAACATTGATAAAGGACAAGAA
TTATAAAGAAGCGTTGAAGATACTaccaaaagaattgattttgGATATTA
TTGCTTTTTATTTTGCTGAAATTGGCTGGGATGTCATCCATGAGAAAATT
GAGAAAGAACTTGATAGGCTCATAGAGCGGGCTGAGAAAGAAATTGACCG
CAGCttaaagaaagttgaaaaagaacTTGACAGGTTCACAGAGCGAGCTG
AGAAAGAAATTGACCGCGGTTCAAAGACAGTTGAAAATGAACTTGACAGG
CTCACAGAGCGAGCTGAGAAAGAAATTGACCGCAGCTTAAAGAAAGTCGA
AAAAGAACTTGACAGGTTCACAGAGCGAGCTGAGAAAGAAATTGACCGCA
GTTcaaagaaagttgaaaatgagGTTGACCGTGTTAAAGAAAGCGTGGTG
AGTGAAGTCCAGAGAAGTgggaaaaaagttgaacacgaGGTTAACCATGT
TAAAGAAAGCGTGGTTAGTGAAGTCCAGAGAAGTgggaaaaaagttgaac
atgaACTCAAACGATTAAAACGTAGATTCAGACGATAAAGTCTCTTTGCT
TTCACAATNGGGAActattttttgcgggaactaatttttgcggttcgcag
ttcaagatttaatatttaatatttacgggaacttaattttgcagatttct
cacttgaaagaaaattagagccgtACTGTGAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067988-exon-scaffold_478-1491911889:239339..239764 | TCONS_00067988-exon-scaffold_478-1491911889:239339..239764 | Clytia hemisphaerica | exon |
| TCONS_00067988-exon-scaffold_478-1510915933:239339..239764 | TCONS_00067988-exon-scaffold_478-1510915933:239339..239764 | Clytia hemisphaerica | exon |
| TCONS_00067988-exon-scaffold_478-1575043694:239339..239764 | TCONS_00067988-exon-scaffold_478-1575043694:239339..239764 | Clytia hemisphaerica | exon |
| TCONS_00067988-exon-scaffold_478-1491911889:240652..241805 | TCONS_00067988-exon-scaffold_478-1491911889:240652..241805 | Clytia hemisphaerica | exon |
| TCONS_00067988-exon-scaffold_478-1510915933:240652..241805 | TCONS_00067988-exon-scaffold_478-1510915933:240652..241805 | Clytia hemisphaerica | exon |
| TCONS_00067988-exon-scaffold_478-1575043694:240652..241805 | TCONS_00067988-exon-scaffold_478-1575043694:240652..241805 | Clytia hemisphaerica | exon |
| TCONS_00067988-exon-scaffold_478-1491911889:242004..242115 | TCONS_00067988-exon-scaffold_478-1491911889:242004..242115 | Clytia hemisphaerica | exon |
| TCONS_00067988-exon-scaffold_478-1510915933:242004..242115 | TCONS_00067988-exon-scaffold_478-1510915933:242004..242115 | Clytia hemisphaerica | exon |
| TCONS_00067988-exon-scaffold_478-1575043694:242004..242115 | TCONS_00067988-exon-scaffold_478-1575043694:242004..242115 | Clytia hemisphaerica | exon |
| TCONS_00067988-exon-scaffold_478-1491911889:242183..242372 | TCONS_00067988-exon-scaffold_478-1491911889:242183..242372 | Clytia hemisphaerica | exon |
| TCONS_00067988-exon-scaffold_478-1510915933:242183..242372 | TCONS_00067988-exon-scaffold_478-1510915933:242183..242372 | Clytia hemisphaerica | exon |
| TCONS_00067988-exon-scaffold_478-1575043694:242183..242372 | TCONS_00067988-exon-scaffold_478-1575043694:242183..242372 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:239339..242372 + |
Blast
The following BLAST results are available for this feature:
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