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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067978 ID=TCONS_00067978|Name=TCONS_00067978|organism=Clytia hemisphaerica|type=transcript|length=4000bpRun BLAST on NCBI protein sequence of TCONS_00067978-protein >TCONS_00067978-protein ID=TCONS_00067978-protein|Name=TCONS_00067978-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp PGVRKQNRSKERKMIRGQEVSDTNDNKSASAMFQNNKANNDRNTKASTSSRun BLAST on NCBI transcript from alignment at scaffold_478:154796..176157+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067978 ID=TCONS_00067978|Name=TCONS_00067978|organism=Clytia hemisphaerica|type=transcript|length=21362bp|location=Sequence derived from alignment at scaffold_478:154796..176157+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_478:154796..176157+ >TCONS_00067978 ID=TCONS_00067978|Name=TCONS_00067978|organism=Clytia hemisphaerica|type=CDS|length=18450bp|location=Sequence derived from alignment at scaffold_478:154796..176157+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067978 vs. Swiss-Prot (Human)
Match: SSBP3 (Single-stranded DNA-binding protein 3 OS=Homo sapiens GN=SSBP3 PE=1 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 4.311e-40 Identity = 103/225 (45.78%), Postives = 127/225 (56.44%), Query Frame = 2
Query: 194 AKEKLAIYVYEYLQHQGATRAAQTFLSEIQWEKNIALGDSPGFLTNWWCVFWDLYSAAPERQEPNNHTHEAKAFHDLNSGTLPSPNYIPQPPGDMNN--------MTGMPGY----YARPPMGGNNMNMLG----AFMGGNRYNAGRTPNIRIPNQM--GMGGQLPF--SNMDPSRQQQVA--GGNYQNMQ-----------ANSMTSGMRPFNNGMGPVPPNYN 769
A+EKLA+YVYEYL H GA ++AQTFLSEI+WEKNI LG+ PGFL +WWCVFWDLY AAPER++ H+ EAKAFHD ++ PSP PP D G PG +A+PP N +M+G FM RY G P IR+ NQ G+ G P ++MDP+RQQ GG+ Q M + SGMRP N +GP P N
Sbjct: 16 AREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPP-HNPSSMMGPHSQPFM-SPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGIN 238 The following BLAST results are available for this feature:
BLAST of TCONS_00067978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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