TCONS_00067966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067966
Unique NameTCONS_00067966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067966 ID=TCONS_00067966|Name=TCONS_00067966|organism=Clytia hemisphaerica|type=transcript|length=307bp
TTCAGCACGATGCTCTTTTCATGCAATTCATCTATGATACCCATGGCCTG
GTtgaatttatcttgccaatacTGTGATGAGCCACGTCTTTTATCAGGAG
AGACCATGGACAAAGTTGATGATGTTGAAATTGCAGACGAGTTTGCATCG
TTATCATTTGTATCGACGACTGCAGCAGCCCTTTCAAATTTATCTTGCTG
CATCATCCCCTCCTTGGAAACCCATTTATCCCAGATGTTTGCTAGAATAA
CCATAAAGGCTTCTCGACTTAAAGTGTTAAAGTCAGTAAACATTgatgct
ttttctt
Run BLAST on NCBI

protein sequence of TCONS_00067966-protein

>TCONS_00067966-protein ID=TCONS_00067966-protein|Name=TCONS_00067966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
EKASMFTDFNTLSREAFMVILANIWDKWVSKEGMMQQDKFERAAAVVDTN
DNDANSSAISTSSTLSMVSPDKRRGSSQYWQDKFNQAMGIIDELHEKSIV
L
Run BLAST on NCBI

transcript from alignment at scaffold_477:535611..535917

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067966 ID=TCONS_00067966|Name=TCONS_00067966|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at scaffold_477:535611..535917 (Clytia hemisphaerica)
aagaaaaagcatcAATGTTTACTGACTTTAACACTTTAAGTCGAGAAGCC
TTTATGGTTATTCTAGCAAACATCTGGGATAAATGGGTTTCCAAGGAGGG
GATGATGCAGCAAGATAAATTTGAAAGGGCTGCTGCAGTCGTCGATACAA
ATGATAACGATGCAAACTCGTCTGCAATTTCAACATCATCAACTTTGTCC
ATGGTCTCTCCTGATAAAAGACGTGGCTCATCACAgtattggcaagataa
attcaACCAGGCCATGGGTATCATAGATGAATTGCATGAAAAGAGCATCG
TGCTGAA

Coding sequence (CDS) from alignment at scaffold_477:535611..535917

>TCONS_00067966 ID=TCONS_00067966|Name=TCONS_00067966|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_477:535611..535917 (Clytia hemisphaerica)
gaaaaagcatcAATGTTTACTGACTTTAACACTTTAAGTCGAGAAGCCTT
TATGGTTATTCTAGCAAACATCTGGGATAAATGGGTTTCCAAGGAGGGGA
TGATGCAGCAAGATAAATTTGAAAGGGCTGCTGCAGTCGTCGATACAAAT
GATAACGATGCAAACTCGTCTGCAATTTCAACATCATCAACTTTGTCCAT
GGTCTCTCCTGATAAAAGACGTGGCTCATCACAgtattggcaagataaat
tcaACCAGGCCATGGGTATCATAGATGAATTGCATGAAAAGAGCATCGTG
CTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042449XLOC_042449Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067966-proteinTCONS_00067966-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067966-exon-scaffold_477-1491911889:535611..535917TCONS_00067966-exon-scaffold_477-1491911889:535611..535917Clytia hemisphaericaexon
TCONS_00067966-exon-scaffold_477-1510915933:535611..535917TCONS_00067966-exon-scaffold_477-1510915933:535611..535917Clytia hemisphaericaexon
TCONS_00067966-exon-scaffold_477-1575043694:535611..535917TCONS_00067966-exon-scaffold_477-1575043694:535611..535917Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:535611..535917 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.80897	1.71255	3.21467	3.3484	5.1953	2.12247	4.65142	3.72457	0.914628	1.69961	0.73309	0.481904	1.69772	0.300828	1.55974	0.93987	0.271597	1.20541	1.53838	2.59559	2.16085	2.81272	0	0.377136	0.776882	1.39102	0.966152	0.613478	0.694054	0.409128
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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