TCONS_00067959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067959
Unique NameTCONS_00067959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067959 ID=TCONS_00067959|Name=TCONS_00067959|organism=Clytia hemisphaerica|type=transcript|length=313bp
ATCAAGTCAGACATCAATATCTCCAACATCAAGTCAGACATCAATATTTC
CGACATCAAGTCAGACATCAATATCTCCGACATCAAATCAGATGTCAATA
TCTCCAACTTCAAGTCAGACATCAATATCTTCGACATCAAGTCAGATGTC
AATATCTCCAACATCAAGTCATACATCAATATCTTCGACATCATCAAGTC
AGACATCAATTCAGGCATCAATATCTTCGACATCAAGTCAGATGTCAATA
TCTCTGAGATCAAGTCAGTTATCAATATCTTCGACATCAAGTCAGACATC
AATTCAGGCATCA
Run BLAST on NCBI

protein sequence of TCONS_00067959-protein

>TCONS_00067959-protein ID=TCONS_00067959-protein|Name=TCONS_00067959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
IKSDINISNIKSDINISDIKSDINISDIKSDVNISNFKSDINIFDIKSDV
NISNIKSYINIFDIIKSDINSGINIFDIKSDVNISEIKSVINIFDIKSDI
NSGI
Run BLAST on NCBI

transcript from alignment at scaffold_477:424070..424382

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067959 ID=TCONS_00067959|Name=TCONS_00067959|organism=Clytia hemisphaerica|type=transcript|length=313bp|location=Sequence derived from alignment at scaffold_477:424070..424382 (Clytia hemisphaerica)
TGATGCCTGAATTGATGTCTGACTTGATGTCGAAGATATTGATAACTGAC
TTGATCTCAGAGATATTGACATCTGACTTGATGTCGAAGATATTGATGCC
TGAATTGATGTCTGACTTGATGATGTCGAAGATATTGATGTATGACTTGA
TGTTGGAGATATTGACATCTGACTTGATGTCGAAGATATTGATGTCTGAC
TTGAAGTTGGAGATATTGACATCTGATTTGATGTCGGAGATATTGATGTC
TGACTTGATGTCGGAAATATTGATGTCTGACTTGATGTTGGAGATATTGA
TGTCTGACTTGAT

Coding sequence (CDS) from alignment at scaffold_477:424070..424382

>TCONS_00067959 ID=TCONS_00067959|Name=TCONS_00067959|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_477:424070..424382 (Clytia hemisphaerica)
GATGCCTGAATTGATGTCTGACTTGATGTCGAAGATATTGATAACTGACT
TGATCTCAGAGATATTGACATCTGACTTGATGTCGAAGATATTGATGCCT
GAATTGATGTCTGACTTGATGATGTCGAAGATATTGATGTATGACTTGAT
GTTGGAGATATTGACATCTGACTTGATGTCGAAGATATTGATGTCTGACT
TGAAGTTGGAGATATTGACATCTGATTTGATGTCGGAGATATTGATGTCT
GACTTGATGTCGGAAATATTGATGTCTGACTTGATGTTGGAGATATTGAT
GTCTGACTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042442XLOC_042442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067959-exon-scaffold_477-1491911889:424070..424382TCONS_00067959-exon-scaffold_477-1491911889:424070..424382Clytia hemisphaericaexon
TCONS_00067959-exon-scaffold_477-1510915933:424070..424382TCONS_00067959-exon-scaffold_477-1510915933:424070..424382Clytia hemisphaericaexon
TCONS_00067959-exon-scaffold_477-1575043694:424070..424382TCONS_00067959-exon-scaffold_477-1575043694:424070..424382Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067959-proteinTCONS_00067959-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:424070..424382 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	2.30483	0.471085	0	0	0	0	3.2627	3.69667	0.329727	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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