TCONS_00067956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067956
Unique NameTCONS_00067956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067956 ID=TCONS_00067956|Name=TCONS_00067956|organism=Clytia hemisphaerica|type=transcript|length=430bp
CTCGTGTATGTGGTGATTACACCAACGTCGAGACCGCTTTACAATTTCTG
ACGTAACTATGGAGACGAAACCCAAATGAAAACATTAATACACATGATCG
GTTATTATATAGATCAGCAGAAATATCCCAAGCATTGGAGTGGTGACTTT
GCTCACATTCTGAAGGACTTGTCTTCACAGCTTGATGAAGTAACTTCACT
TACACGTCAGGGCTCGCAAGCGTGGTGCCAACGATGTATGACATCGCAAC
GATGGTAATGAGGGTATCAGACATCCAGGGGGTTCAATGCTATCTGGATT
TCCAGGGGGTACAAGAAAAAATGCCTACATTCTATCCACTTTTTCAGGTC
GGATATCAAGGAAGgtctttatttttatattgGACATCCAGGGGGCTGTG
GAACACGAAAAatggatatcctcaacaggt
Run BLAST on NCBI

transcript from alignment at scaffold_477:303534..303963

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067956 ID=TCONS_00067956|Name=TCONS_00067956|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at scaffold_477:303534..303963 (Clytia hemisphaerica)
acctgttgaggatatccatTTTTCGTGTTCCACAGCCCCCTGGATGTCca
atataaaaataaagacCTTCCTTGATATCCGACCTGAAAAAGTGGATAGA
ATGTAGGCATTTTTTCTTGTACCCCCTGGAAATCCAGATAGCATTGAACC
CCCTGGATGTCTGATACCCTCATTACCATCGTTGCGATGTCATACATCGT
TGGCACCACGCTTGCGAGCCCTGACGTGTAAGTGAAGTTACTTCATCAAG
CTGTGAAGACAAGTCCTTCAGAATGTGAGCAAAGTCACCACTCCAATGCT
TGGGATATTTCTGCTGATCTATATAATAACCGATCATGTGTATTAATGTT
TTCATTTGGGTTTCGTCTCCATAGTTACGTCAGAAATTGTAAAGCGGTCT
CGACGTTGGTGTAATCACCACATACACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042439XLOC_042439Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067956-exon-scaffold_477-1491911889:303534..303963TCONS_00067956-exon-scaffold_477-1491911889:303534..303963Clytia hemisphaericaexon
TCONS_00067956-exon-scaffold_477-1510915933:303534..303963TCONS_00067956-exon-scaffold_477-1510915933:303534..303963Clytia hemisphaericaexon
TCONS_00067956-exon-scaffold_477-1575043694:303534..303963TCONS_00067956-exon-scaffold_477-1575043694:303534..303963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:303534..303963 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.156545	0.908817	0.177827	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.227121	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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