TCONS_00067955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067955
Unique NameTCONS_00067955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067955 ID=TCONS_00067955|Name=TCONS_00067955|organism=Clytia hemisphaerica|type=transcript|length=1387bp
aatttttacattttaaattgaaaaaggCCATAAATCTAGTAATAGATTAT
GTAAAAGTAAAGTACACCAAGTTTCaacataaaattatatttttgacaga
aaaaaataattatttgagcTGTGTAAATTTTCGTACATACAAAGATAtca
ttttactaaaaaatgGATACAATAAAATACTGTTGTTTTCCTTTTATTTA
AATTATGTGTAATAATAGATTGTCGTGAGAAAACAGCAAGAAACATCGAT
ACATAAAGGAATTGAATGaatattaaaaatgaaaacaaatttgtttgttG
TACATTTCTTTATTGAGGCCACCTGTATAAATATTTGTTATACATAAATT
TTTTGATTACAATTTGTAATATAATGGTAACTTGTCATATAAATTACATA
TTTTTAGCAAATCCATACTTGAGACTATGCAAGACATGCAATACAGAAAA
AAAAGTCCGAATTTAAGAAGAACATGTTATGTCAAATTGAATGAACTTCA
GACACTGATTTCGAAGAGAGTGAAATAGATTTTACAGTACTTTTAacata
tattttcaaaactactaaaaccTTTCTCCTTATTGTAAATCAACTTAcat
ataaatatataaattgGGTAAAATATGGTCATTTTAAAACTAACTTTTAA
ATTCTATTCAAAGCAAAGAAGCATTGTTAAGAAGattgaaaagaaactta
tttcctGCAAAAATACCATGAATTTCTTGGAGTTAACTACACATTAGTGT
ATGTACAAATTACTTTAGATGTAACTCAAAAAAGGTTtcttaaaaatttg
attatGATTCTCAATACCACTTAATACATTAAAATACCTCTCAAAGTATA
AACCAAAGcatacaaaacaaacaaaaaaaaattaaatgagtGAGCATGAT
CCATAACAACCACCACCAGCATCACCACTGTGCATATTACCAGCACTCAA
CCCAATATTTCCTTTAGCATTATCCTTTTCCCAAAGTCCAGGTGTTTGCA
ACACTTTCTCAACCAGTTCCTCGAAAGCACATTCAACTCCGTCCTTAGTT
TTGGCACTTGCCTCAATAAAAAGCATCGAGTGACGTTTAGCAAACTGTAA
TCCCTCTTGTCGTGTAACTTCTCTGCCTTGCTTATCAATTTTATTTCCAA
CCAACATTTTCACCAAGTCCTGTTTTGTAGCATATGTGTCACACTCTGAC
AACCAGTCCTTCAATTTCTCAAAAGTTTGTCGCACACTGACGTCATACAC
AAATACAACACCCTGGGCACCACGATAATAACTTGGTGTCAGTGTACGGA
AACGTTCTTGACCTGCTGTATCCCATAATGCAAGTTTTAATTTGTTTCCA
TCGATATTAACAGTTTTGACCTTGAAGTCTACACCNN
Run BLAST on NCBI

protein sequence of TCONS_00067955-protein

>TCONS_00067955-protein ID=TCONS_00067955-protein|Name=TCONS_00067955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
GVDFKVKTVNIDGNKLKLALWDTAGQERFRTLTPSYYRGAQGVVFVYDVS
VRQTFEKLKDWLSECDTYATKQDLVKMLVGNKIDKQGREVTRQEGLQFAK
RHSMLFIEASAKTKDGVECAFEELVEKVLQTPGLWEKDNAKGNIGLSAGN
MHSGDAGGGCYGSCSLI
Run BLAST on NCBI

transcript from alignment at scaffold_477:285654..287040

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067955 ID=TCONS_00067955|Name=TCONS_00067955|organism=Clytia hemisphaerica|type=transcript|length=1387bp|location=Sequence derived from alignment at scaffold_477:285654..287040 (Clytia hemisphaerica)
NNGGTGTAGACTTCAAGGTCAAAACTGTTAATATCGATGGAAACAAATTA
AAACTTGCATTATGGGATACAGCAGGTCAAGAACGTTTCCGTACACTGAC
ACCAAGTTATTATCGTGGTGCCCAGGGTGTTGTATTTGTGTATGACGTCA
GTGTGCGACAAACTTTTGAGAAATTGAAGGACTGGTTGTCAGAGTGTGAC
ACATATGCTACAAAACAGGACTTGGTGAAAATGTTGGTTGGAAATAAAAT
TGATAAGCAAGGCAGAGAAGTTACACGACAAGAGGGATTACAGTTTGCTA
AACGTCACTCGATGCTTTTTATTGAGGCAAGTGCCAAAACTAAGGACGGA
GTTGAATGTGCTTTCGAGGAACTGGTTGAGAAAGTGTTGCAAACACCTGG
ACTTTGGGAAAAGGATAATGCTAAAGGAAATATTGGGTTGAGTGCTGGTA
ATATGCACAGTGGTGATGCTGGTGGTGGTTGTTATGGATCATGCTCactc
atttaatttttttttgtttgttttgtatgCTTTGGTTTATACTTTGAGAG
GTATTTTAATGTATTAAGTGGTATTGAGAATCataatcaaatttttaaga
AACCTTTTTTGAGTTACATCTAAAGTAATTTGTACATACACTAATGTGTA
GTTAACTCCAAGAAATTCATGGTATTTTTGCaggaaataagtttcttttc
aatCTTCTTAACAATGCTTCTTTGCTTTGAATAGAATTTAAAAGTTAGTT
TTAAAATGACCATATTTTACCcaatttatatatttatatgTAAGTTGATT
TACAATAAGGAGAAAggttttagtagttttgaaaatatatgtTAAAAGTA
CTGTAAAATCTATTTCACTCTCTTCGAAATCAGTGTCTGAAGTTCATTCA
ATTTGACATAACATGTTCTTCTTAAATTCGGACTTTTTTTTCTGTATTGC
ATGTCTTGCATAGTCTCAAGTATGGATTTGCTAAAAATATGTAATTTATA
TGACAAGTTACCATTATATTACAAATTGTAATCAAAAAATTTATGTATAA
CAAATATTTATACAGGTGGCCTCAATAAAGAAATGTACaacaaacaaatt
tgttttcatttttaatattCATTCAATTCCTTTATGTATCGATGTTTCTT
GCTGTTTTCTCACGACAATCTATTATTACACATAATTTAAATAAAAGGAA
AACAACAGTATTTTATTGTATCcattttttagtaaaatgaTATCTTTGTA
TGTACGAAAATTTACACAgctcaaataattatttttttctgtcaaaaata
taattttatgttGAAACTTGGTGTACTTTACTTTTACATAATCTATTACT
AGATTTATGGcctttttcaatttaaaatgtaaaaatt

Coding sequence (CDS) from alignment at scaffold_477:285654..287040

>TCONS_00067955 ID=TCONS_00067955|Name=TCONS_00067955|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_477:285654..287040 (Clytia hemisphaerica)
GGTGTAGACTTCAAGGTCAAAACTGTTAATATCGATGGAAACAAATTAAA
ACTTGCATTATGGGATACAGCAGGTCAAGAACGTTTCCGTACACTGACAC
CAAGTTATTATCGTGGTGCCCAGGGTGTTGTATTTGTGTATGACGTCAGT
GTGCGACAAACTTTTGAGAAATTGAAGGACTGGTTGTCAGAGTGTGACAC
ATATGCTACAAAACAGGACTTGGTGAAAATGTTGGTTGGAAATAAAATTG
ATAAGCAAGGCAGAGAAGTTACACGACAAGAGGGATTACAGTTTGCTAAA
CGTCACTCGATGCTTTTTATTGAGGCAAGTGCCAAAACTAAGGACGGAGT
TGAATGTGCTTTCGAGGAACTGGTTGAGAAAGTGTTGCAAACACCTGGAC
TTTGGGAAAAGGATAATGCTAAAGGAAATATTGGGTTGAGTGCTGGTAAT
ATGCACAGTGGTGATGCTGGTGGTGGTTGTTATGGATCATGCTCactcat
ttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042438XLOC_042438Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067955-proteinTCONS_00067955-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067955-exon-scaffold_477-1491911889:285654..287040TCONS_00067955-exon-scaffold_477-1491911889:285654..287040Clytia hemisphaericaexon
TCONS_00067955-exon-scaffold_477-1510915933:285654..287040TCONS_00067955-exon-scaffold_477-1510915933:285654..287040Clytia hemisphaericaexon
TCONS_00067955-exon-scaffold_477-1575043694:285654..287040TCONS_00067955-exon-scaffold_477-1575043694:285654..287040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:285654..287040 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.533	25.3159	23.3926	21.4848	20.9976	17.5875	37.5585	35.7418	30.0233	27.255	23.0674	20.3786	20.8911	18.7003	13.3733	13.6542	21.433	19.1642	19.9773	21.1394	20.7617	20.1116	25.3461	26.0257	24.8334	21.9035	14.0407	9.43152	17.1149	16.6881
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00067955 vs. Swiss-Prot (Human)
Match: RAB18 (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.855e-73
Identity = 107/147 (72.79%), Postives = 127/147 (86.39%), Query Frame = -3 
Query:  945 GVDFKVKTVNIDGNKLKLALWDTAGQERFRTLTPSYYRGAQGVVFVYDVSVRQTFEKLKDWLSECDTYATKQDLVKMLVGNKIDKQGREVTRQEGLQFAKRHSMLFIEASAKTKDGVECAFEELVEKVLQTPGLWEKDNAKGNIGLS 1385
            GVDFKVKT+++DGNK KLA+WDTAGQERFRTLTPSYYRGAQGV+ VYDV+ R TF KL +WL+E +TY T+ D+V MLVGNKIDK+ REV R EGL+FA++HSMLFIEASAKT DGV+CAFEELVEK++QTPGLWE +N    + LS
Sbjct:   42 GVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVKLS 188
The following BLAST results are available for this feature:
BLAST of TCONS_00067955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB181.855e-7372.79Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]
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