TCONS_00067955-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067955-protein
Unique NameTCONS_00067955-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length167

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067955-protein ID=TCONS_00067955-protein|Name=TCONS_00067955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
GVDFKVKTVNIDGNKLKLALWDTAGQERFRTLTPSYYRGAQGVVFVYDVS
VRQTFEKLKDWLSECDTYATKQDLVKMLVGNKIDKQGREVTRQEGLQFAK
RHSMLFIEASAKTKDGVECAFEELVEKVLQTPGLWEKDNAKGNIGLSAGN
MHSGDAGGGCYGSCSLI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042438XLOC_042438Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067955TCONS_00067955Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 72..85
score: 43.95
coord: 106..128
score: 39.59
coord: 9..31
score: 51.0
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 6..131
e-value: 9.0E-8
score: -18.8
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 1..131
e-value: 1.1E-9
score: 22.7
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 1..131
e-value: 2.8E-62
score: 222.9
NoneNo IPR availableGENE3D3.30.70.1390coord: 1..32
e-value: 1.6E-13
score: 49.9
NoneNo IPR availableGENE3D3.40.50.300coord: 33..129
e-value: 7.6E-35
score: 118.5
NoneNo IPR availablePROSITEPS51419RABcoord: 1..164
score: 27.024
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 1..129
e-value: 1.4E-40
score: 138.5
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 5..123
e-value: 9.7E-23
score: 78.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..133

Blast
[Close]
BLAST of TCONS_00067955-protein vs. Swiss-Prot (Human)
Match: RAB18 (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.425e-79
Identity = 107/147 (72.79%), Postives = 127/147 (86.39%), Query Frame = 0 
Query:    1 GVDFKVKTVNIDGNKLKLALWDTAGQERFRTLTPSYYRGAQGVVFVYDVSVRQTFEKLKDWLSECDTYATKQDLVKMLVGNKIDKQGREVTRQEGLQFAKRHSMLFIEASAKTKDGVECAFEELVEKVLQTPGLWEKDNAKGNIGLS 147
            GVDFKVKT+++DGNK KLA+WDTAGQERFRTLTPSYYRGAQGV+ VYDV+ R TF KL +WL+E +TY T+ D+V MLVGNKIDK+ REV R EGL+FA++HSMLFIEASAKT DGV+CAFEELVEK++QTPGLWE +N    + LS
Sbjct:   42 GVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVKLS 188
The following BLAST results are available for this feature:
BLAST of TCONS_00067955-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB182.425e-7972.79Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]
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