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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067941 ID=TCONS_00067941|Name=TCONS_00067941|organism=Clytia hemisphaerica|type=transcript|length=1034bp
ATCCATATAATATAAAGCTTGTGAATGTCGAGATTTAAAGTGAGGGGTTG
AGCTCGAGGAAAAATGGGTTAATAAAATTGGTACCCAAGTctaagtttaa
gtttaagtgcaaagaaaatgaaacaaattatGAAGAGCAATTATAAGTCA
TAAAGAattatatttaatttttaaaacatcttCGTCTAAAGTGAAACTTC
TTGCGATTTTATGAAAGTGACCTTTGCAATTCTACGGAGTTTTTTGTCTT
TGAGCATGTAAATACAGGGATTAGCACAACTATTCCCAAGAAAAATCATA
TTGGTTATTTGATATAAGTGACCGCTTTCAATTACACTATAAGCATACAG
AGTGTGTGAGAAAATGGTTAAACCGGTGCATGTGAAATACACACCAATCA
GCCAAAGTGAGCGCCGCACAAGCTTCTTAGAAATGCGCTCTGTTACTTGG
GTATTCAATTCTTGTTGGATTGTTGAGTTTGCTCTTACGGCGAcgctttt
tcttgattttttgaataCAAATAAGATCATGAGGTATAGCACTGGTAAAG
ATATGATCGTGGTGATGGTAATTGCAAAAGAAATATGACTGTTGATTATA
TTTCCTAGAATCACATTGATAAGCATCGGGAAGGCTGGTACAAACCAACA
CAACACTATTAAGATCCATAACCGCTTCTCTGTGATGAGATCATCAAAAG
TGCTTGTTCTTGAAATCTTGAGATATTTGATAGCGGCTAACATGATGATT
GNAGATCATCAAAAGTGCTTgatcttgaaattttgagatatttgaTAGCG
GCTAACATGATGATTGTCAAAGATGAAGTTGAGGTCATGCTTAACAGGAC
CAAGCCAAAAATCCTCATGGCGATTGGGAACGATCCAAAATCAAATGTCC
AAAAGTTTAGCCACGGATAAACTGGATATACAGTGATTGAAACCAAAGCA
TCGCAAACAGCAAGTGATAATAAAATCAGATCAATATTATCTCGATCGTT
tgaattttgattctttttataaaTACTGATGATG Run BLAST on NCBI protein sequence of TCONS_00067941-protein >TCONS_00067941-protein ID=TCONS_00067941-protein|Name=TCONS_00067941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MLAAIKYLKISRTSTFDDLITEKRLWILIVLCWFVPAFPMLINVILGNII
NSHISFAITITTIISLPVLYLMILFVFKKSRKSVAVRANSTIQQELNTQV
TERISKKLVRRSLWLIGVYFTCTGLTIFSHTLYAYSVIESGHLYQITNMI
FLGNSCANPCIYMLKDKKLRRIAKVTFIKSQEVSL Run BLAST on NCBI transcript from alignment at scaffold_477:26972..28005 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067941 ID=TCONS_00067941|Name=TCONS_00067941|organism=Clytia hemisphaerica|type=transcript|length=1034bp|location=Sequence derived from alignment at scaffold_477:26972..28005 (Clytia hemisphaerica)
CATCATCAGTAtttataaaaagaatcaaaattcaAACGATCGAGATAATA
TTGATCTGATTTTATTATCACTTGCTGTTTGCGATGCTTTGGTTTCAATC
ACTGTATATCCAGTTTATCCGTGGCTAAACTTTTGGACATTTGATTTTGG
ATCGTTCCCAATCGCCATGAGGATTTTTGGCTTGGTCCTGTTAAGCATGA
CCTCAACTTCATCTTTGACAATCATCATGTTAGCCGCTAtcaaatatctc
aaaatttcaagatcAAGCACTTTTGATGATCTNCAATCATCATGTTAGCC
GCTATCAAATATCTCAAGATTTCAAGAACAAGCACTTTTGATGATCTCAT
CACAGAGAAGCGGTTATGGATCTTAATAGTGTTGTGTTGGTTTGTACCAG
CCTTCCCGATGCTTATCAATGTGATTCTAGGAAATATAATCAACAGTCAT
ATTTCTTTTGCAATTACCATCACCACGATCATATCTTTACCAGTGCTATA
CCTCATGATCTTATTTGtattcaaaaaatcaagaaaaagcgTCGCCGTAA
GAGCAAACTCAACAATCCAACAAGAATTGAATACCCAAGTAACAGAGCGC
ATTTCTAAGAAGCTTGTGCGGCGCTCACTTTGGCTGATTGGTGTGTATTT
CACATGCACCGGTTTAACCATTTTCTCACACACTCTGTATGCTTATAGTG
TAATTGAAAGCGGTCACTTATATCAAATAACCAATATGATTTTTCTTGGG
AATAGTTGTGCTAATCCCTGTATTTACATGCTCAAAGACAAAAAACTCCG
TAGAATTGCAAAGGTCACTTTCATAAAATCGCAAGAAGTTTCACTTTAGA
CGaagatgttttaaaaattaaatataatTCTTTATGACTTATAATTGCTC
TTCataatttgtttcattttctttgcacttaaacttaaacttagACTTGG
GTACCAATTTTATTAACCCATTTTTCCTCGAGCTCAACCCCTCACTTTAA
ATCTCGACATTCACAAGCTTTATATTATATGGAT Coding sequence (CDS) from alignment at scaffold_477:26972..28005 >TCONS_00067941 ID=TCONS_00067941|Name=TCONS_00067941|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_477:26972..28005 (Clytia hemisphaerica)
ATGTTAGCCGCTATCAAATATCTCAAGATTTCAAGAACAAGCACTTTTGA
TGATCTCATCACAGAGAAGCGGTTATGGATCTTAATAGTGTTGTGTTGGT
TTGTACCAGCCTTCCCGATGCTTATCAATGTGATTCTAGGAAATATAATC
AACAGTCATATTTCTTTTGCAATTACCATCACCACGATCATATCTTTACC
AGTGCTATACCTCATGATCTTATTTGtattcaaaaaatcaagaaaaagcg
TCGCCGTAAGAGCAAACTCAACAATCCAACAAGAATTGAATACCCAAGTA
ACAGAGCGCATTTCTAAGAAGCTTGTGCGGCGCTCACTTTGGCTGATTGG
TGTGTATTTCACATGCACCGGTTTAACCATTTTCTCACACACTCTGTATG
CTTATAGTGTAATTGAAAGCGGTCACTTATATCAAATAACCAATATGATT
TTTCTTGGGAATAGTTGTGCTAATCCCTGTATTTACATGCTCAAAGACAA
AAAACTCCGTAGAATTGCAAAGGTCACTTTCATAAAATCGCAAGAAGTTT
CACTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067941-exon-scaffold_477-1491911889:26972..28005 | TCONS_00067941-exon-scaffold_477-1491911889:26972..28005 | Clytia hemisphaerica | exon |
| TCONS_00067941-exon-scaffold_477-1510915933:26972..28005 | TCONS_00067941-exon-scaffold_477-1510915933:26972..28005 | Clytia hemisphaerica | exon |
| TCONS_00067941-exon-scaffold_477-1575043694:26972..28005 | TCONS_00067941-exon-scaffold_477-1575043694:26972..28005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:26972..28005 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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