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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067941 ID=TCONS_00067941|Name=TCONS_00067941|organism=Clytia hemisphaerica|type=transcript|length=1034bp ATCCATATAATATAAAGCTTGTGAATGTCGAGATTTAAAGTGAGGGGTTG AGCTCGAGGAAAAATGGGTTAATAAAATTGGTACCCAAGTctaagtttaa gtttaagtgcaaagaaaatgaaacaaattatGAAGAGCAATTATAAGTCA TAAAGAattatatttaatttttaaaacatcttCGTCTAAAGTGAAACTTC TTGCGATTTTATGAAAGTGACCTTTGCAATTCTACGGAGTTTTTTGTCTT TGAGCATGTAAATACAGGGATTAGCACAACTATTCCCAAGAAAAATCATA TTGGTTATTTGATATAAGTGACCGCTTTCAATTACACTATAAGCATACAG AGTGTGTGAGAAAATGGTTAAACCGGTGCATGTGAAATACACACCAATCA GCCAAAGTGAGCGCCGCACAAGCTTCTTAGAAATGCGCTCTGTTACTTGG GTATTCAATTCTTGTTGGATTGTTGAGTTTGCTCTTACGGCGAcgctttt tcttgattttttgaataCAAATAAGATCATGAGGTATAGCACTGGTAAAG ATATGATCGTGGTGATGGTAATTGCAAAAGAAATATGACTGTTGATTATA TTTCCTAGAATCACATTGATAAGCATCGGGAAGGCTGGTACAAACCAACA CAACACTATTAAGATCCATAACCGCTTCTCTGTGATGAGATCATCAAAAG TGCTTGTTCTTGAAATCTTGAGATATTTGATAGCGGCTAACATGATGATT GNAGATCATCAAAAGTGCTTgatcttgaaattttgagatatttgaTAGCG GCTAACATGATGATTGTCAAAGATGAAGTTGAGGTCATGCTTAACAGGAC CAAGCCAAAAATCCTCATGGCGATTGGGAACGATCCAAAATCAAATGTCC AAAAGTTTAGCCACGGATAAACTGGATATACAGTGATTGAAACCAAAGCA TCGCAAACAGCAAGTGATAATAAAATCAGATCAATATTATCTCGATCGTT tgaattttgattctttttataaaTACTGATGATG Run BLAST on NCBI protein sequence of TCONS_00067941-protein >TCONS_00067941-protein ID=TCONS_00067941-protein|Name=TCONS_00067941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MLAAIKYLKISRTSTFDDLITEKRLWILIVLCWFVPAFPMLINVILGNII NSHISFAITITTIISLPVLYLMILFVFKKSRKSVAVRANSTIQQELNTQV TERISKKLVRRSLWLIGVYFTCTGLTIFSHTLYAYSVIESGHLYQITNMI FLGNSCANPCIYMLKDKKLRRIAKVTFIKSQEVSL Run BLAST on NCBI transcript from alignment at scaffold_477:26972..28005 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067941 ID=TCONS_00067941|Name=TCONS_00067941|organism=Clytia hemisphaerica|type=transcript|length=1034bp|location=Sequence derived from alignment at scaffold_477:26972..28005 (Clytia hemisphaerica) CATCATCAGTAtttataaaaagaatcaaaattcaAACGATCGAGATAATA
TTGATCTGATTTTATTATCACTTGCTGTTTGCGATGCTTTGGTTTCAATC
ACTGTATATCCAGTTTATCCGTGGCTAAACTTTTGGACATTTGATTTTGG
ATCGTTCCCAATCGCCATGAGGATTTTTGGCTTGGTCCTGTTAAGCATGA
CCTCAACTTCATCTTTGACAATCATCATGTTAGCCGCTAtcaaatatctc
aaaatttcaagatcAAGCACTTTTGATGATCTNCAATCATCATGTTAGCC
GCTATCAAATATCTCAAGATTTCAAGAACAAGCACTTTTGATGATCTCAT
CACAGAGAAGCGGTTATGGATCTTAATAGTGTTGTGTTGGTTTGTACCAG
CCTTCCCGATGCTTATCAATGTGATTCTAGGAAATATAATCAACAGTCAT
ATTTCTTTTGCAATTACCATCACCACGATCATATCTTTACCAGTGCTATA
CCTCATGATCTTATTTGtattcaaaaaatcaagaaaaagcgTCGCCGTAA
GAGCAAACTCAACAATCCAACAAGAATTGAATACCCAAGTAACAGAGCGC
ATTTCTAAGAAGCTTGTGCGGCGCTCACTTTGGCTGATTGGTGTGTATTT
CACATGCACCGGTTTAACCATTTTCTCACACACTCTGTATGCTTATAGTG
TAATTGAAAGCGGTCACTTATATCAAATAACCAATATGATTTTTCTTGGG
AATAGTTGTGCTAATCCCTGTATTTACATGCTCAAAGACAAAAAACTCCG
TAGAATTGCAAAGGTCACTTTCATAAAATCGCAAGAAGTTTCACTTTAGA
CGaagatgttttaaaaattaaatataatTCTTTATGACTTATAATTGCTC
TTCataatttgtttcattttctttgcacttaaacttaaacttagACTTGG
GTACCAATTTTATTAACCCATTTTTCCTCGAGCTCAACCCCTCACTTTAA
ATCTCGACATTCACAAGCTTTATATTATATGGAT Coding sequence (CDS) from alignment at scaffold_477:26972..28005 >TCONS_00067941 ID=TCONS_00067941|Name=TCONS_00067941|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_477:26972..28005 (Clytia hemisphaerica) ATGTTAGCCGCTATCAAATATCTCAAGATTTCAAGAACAAGCACTTTTGA TGATCTCATCACAGAGAAGCGGTTATGGATCTTAATAGTGTTGTGTTGGT TTGTACCAGCCTTCCCGATGCTTATCAATGTGATTCTAGGAAATATAATC AACAGTCATATTTCTTTTGCAATTACCATCACCACGATCATATCTTTACC AGTGCTATACCTCATGATCTTATTTGtattcaaaaaatcaagaaaaagcg TCGCCGTAAGAGCAAACTCAACAATCCAACAAGAATTGAATACCCAAGTA ACAGAGCGCATTTCTAAGAAGCTTGTGCGGCGCTCACTTTGGCTGATTGG TGTGTATTTCACATGCACCGGTTTAACCATTTTCTCACACACTCTGTATG CTTATAGTGTAATTGAAAGCGGTCACTTATATCAAATAACCAATATGATT TTTCTTGGGAATAGTTGTGCTAATCCCTGTATTTACATGCTCAAAGACAA AAAACTCCGTAGAATTGCAAAGGTCACTTTCATAAAATCGCAAGAAGTTT CACTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067941-exon-scaffold_477-1491911889:26972..28005 | TCONS_00067941-exon-scaffold_477-1491911889:26972..28005 | Clytia hemisphaerica | exon |
TCONS_00067941-exon-scaffold_477-1510915933:26972..28005 | TCONS_00067941-exon-scaffold_477-1510915933:26972..28005 | Clytia hemisphaerica | exon |
TCONS_00067941-exon-scaffold_477-1575043694:26972..28005 | TCONS_00067941-exon-scaffold_477-1575043694:26972..28005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_477 | supercontig | scaffold_477:26972..28005 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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