TCONS_00067917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067917
Unique NameTCONS_00067917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067917 ID=TCONS_00067917|Name=TCONS_00067917|organism=Clytia hemisphaerica|type=transcript|length=718bp
GAATGGATCGCAGACTTAAATGCAACACAATCTATTGCTTATCCAAATAC
TACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGCTTATCCAA
ATACTACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGCTTAT
CCAAATACTACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGC
TTATCCAAATGCTACAGAATGGCTCACAGACCTAAATGCAACACAATCCA
TTGCTTATTCCAATGCTACGGTATGGATCGGGGAAACATTGAATGGAACC
AACAGCTCAATCAACCATAATCAGCAGAACCACACTACAACAGTACAAGG
GTCATCTATTTCTCCAAGTAGTAGCTTTACAACAAACATCGAAAGTACTT
CAATTTCAACTACgtcaacaacaacgaccaccacgAAAAATTCTACGACC
ACCACACAAAAACCTACGACCACCACGGAAAAACCAACGACTACCACGGA
AAATCCTACGACCACCACACAAAAACCTACGACCACCACGGAAAAACCTA
CGACCACAACAGAAAAAACTACGACCACCACGGAAAAACCTACAACCACC
ACTACTccaacgacaacgaccaccactACGACAACGGAGGAGCCCTACAC
CGGCCCAGTTACAGATTTAGCAAATGTTGGTTCGTGGACCACCTGGCCGA
TCTGTACTCCATCGTGTG
Run BLAST on NCBI

transcript from alignment at scaffold_477:417962..420222-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067917 ID=TCONS_00067917|Name=TCONS_00067917|organism=Clytia hemisphaerica|type=transcript|length=2261bp|location=Sequence derived from alignment at scaffold_477:417962..420222- (Clytia hemisphaerica)
GAATGGATCGCAGACTTAAATGCAACACAATCTATTGCTTATCCAAATAC
TACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGCTTATCCAA
ATACTACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGCTTAT
CCAAATACTACAGAATGGCTCACAGACCTAAATGCAACACAATCTATTGC
TTATCCAAATGCTACAGAATGGCTCACAGACCTAAATGCAACACAATCCA
TTGCTTATTCCAATGCTACGGTATGGATCGGGGAAACATTGAATGGAACC
AACAGCTCAATCAACCATAATCAGCAGAACCACACTACAACAGTACAAGG
GTCATCTATTTCTCCAAGTAGTAGCTTTACAACAAACATCGAAAGTACTT
CAATTTCAACTACGTCAACAACAACGACCACCACGAAAAATTCTACGACC
ACCACACAAAAACCTACGACCACCACGGAAAAACCAACGACTACCACGGA
AAATCCTACGACCACCACACAAAAACCTACGACCACCACGGAAAAACCTA
CGACCACAACAGAAAAAACTACGACCACCACGGAAAAACCTACAACCACC
ACTACTCCAACGACAACGACCACCACTACGACAACGGAGGAGCCCTACAC
CGGCCCAGTTACAGGTATGTCATATCTATTTCAGTTTCTTGAGCAATTTC
CCTCTACGGCTCTGAGTAAAATATCAAATCCTTGACAAATTAAAAAGCCC
ATAAAATCTTTAAACAACCAGTCCAGGATAACTGAAGGTCAGAAGCACAG
GTCAACGCAGAATCACATTTCATCTCTTACAATCTCAAGAAAAGATTGAC
GCTGTGGTATAGTGGTCATTGACCTTGATTGCTGCACAGACGACTGAGGT
TCGATTCCCACTCGCAGCGGTTCACTTGACAAGTCAATGAACCTTCGCCC
GGGTCAACCTATGCCATGTGAGGGGAATTGGGTAGTAAGCCTAAGGTGCT
GACGGGGTGCTTATTGAAAGCGTCTATAGTTGCGAAAAAAAGGCCTCAAA
GCCTCCTGCAACTCAACCAAATAGAAATAGACTAATTTTTCTTTAATAGA
TTTAGCAAATGTTGGTTCGTGGACCACCTGGCCGATCTGTACTCCATCGT
GTGAGGTTCAAACCTTACATCGCTCTAGGTCGTGTTACTCCACAACAAAA
GACGAGGTGGCGAAAACTTGTGGTACAGATCTCGTGGCGACTTATGAGAC
AACACAATGTCTAGATATAAGTAATTGCTTTGAGAGTGGATATTACATGG
GTGGTCAAGGAGAATCATGTGATATTTTCTGTTCCTCAAGAGGTAAAAAT
AACTGATTTTGATAAGTTGATAAGCCAATGAAATTATGAAAGCTCTGTAA
AGATGACAATGTCATTTGCAATTTGATTGGTCAAAAGGATAAAAAATTAA
CCAATCAAACACCCTTTAATTGCCGTAAACCCTTTGGCGTAAAATCTTTC
AGTCTTCTGGGTCATTCTTACATTAGAAATGGTGAAATCAATCTCTATCC
TGAAAAGACAGAGACGAACATCGTCGCAAGTGTCTTGGAATTATGNCAAC
GACTACCACGGAAAATCCTACGACCACCACACAAAAACCTACGACCACCA
CGGAAAAACCTACGACCACAACAGAAAAAACTACGACCACCACGGAAAAA
CCTACAACCACCACTACTCCAACGACAACGACCACCACTACGACAACGGA
GGAGCCCTACACCGGCCCAGTTACAGGTATGTCATATCTATTTCAGTTTC
TTGAGCAATTTCCCTCTACGGCTCTGAGTAAAATATCAAATCCTTGACAA
ATTAAAAAGCCCATAAAATCTTTAAACAACCAGTCCAGGATAACTGAAGG
TCAGAAGCACAGGTCAACAGAATCACATTTCATATCTTACAATCTCAAGA
AAAGATTGACTGTGGTATAGTGGTCATTGACCTTGGTTGCTGCACAGGCG
ACTGAGGTTCGATTCCCACTCGCAGCGGTTCACTTGACAAGTCAATGAAC
CTTCGCCCGGGTCAACCTATGCCATGTGAGGGGAATTGGGTAGTAAGCCT
AAGGTGCTGACGGGGTGCTTATTGAAAGCGTCTATAGTTGCGAAAAAAAG
GCCTCAAAGCCTCCTGCAACTCAACCAAATAGAAATAGACTAATTTTTCT
TTAATAGATTTAGCAAATGTTGGTTCGTGGACCACCTGGCCGATCTGTAC
TCCATCGTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042414XLOC_042414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067917-exon-scaffold_477-1575043694:419559..420222TCONS_00067917-exon-scaffold_477-1575043694:419559..420222Clytia hemisphaericaexon
TCONS_00067917-exon-scaffold_477-1575043694:417962..418015TCONS_00067917-exon-scaffold_477-1575043694:417962..418015Clytia hemisphaericaexon
TCONS_00067917-exon-scaffold_477-1510915933:419559..420222TCONS_00067917-exon-scaffold_477-1510915933:419559..420222Clytia hemisphaericaexon
TCONS_00067917-exon-scaffold_477-1510915933:417962..418015TCONS_00067917-exon-scaffold_477-1510915933:417962..418015Clytia hemisphaericaexon
TCONS_00067917-exon-scaffold_477-1491911889:419559..420222TCONS_00067917-exon-scaffold_477-1491911889:419559..420222Clytia hemisphaericaexon
TCONS_00067917-exon-scaffold_477-1491911889:417962..418015TCONS_00067917-exon-scaffold_477-1491911889:417962..418015Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:417962..420222 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0348504	0	0	0	0	0	0	0	0	0	0	0	0.950295	0.553622	0	0	0	0.0268153	1.81529	2.59737	0.0336954	0	0	0	0	0.0333941	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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