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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067903 ID=TCONS_00067903|Name=TCONS_00067903|organism=Clytia hemisphaerica|type=transcript|length=2708bp
ttGATCTGGGTATTGTTATATTATCTTTAATTGGGATCGTATTGGAATAT
TTAGATGTCGTCTTACAAGTGACACCAAGTGTTTTACGTGTAGCAAGGGT
GCTACGTATCGGAAGGCTGCTTCGTTATTTCAACAGCGCTAAAGGAATAC
GGCGTCTTTTAGTTGCTCTTGTTATCTCCTTACCAGCCCTCTTTAACATT
GGCGCGCTTTTATTCCTTATATTATTCATCTATGCTATTATTGGAATGTC
AAATTTTGGGTATGTTAAAAAGAACGGTGCACTAAATGAAGTAGTCAATT
TCGAGACGTTTGGTAGTTCCATGATGGTGTTATTCCGATTGGCGACGTCT
GCCGGCTGGAATGAAGTATTAGACGCTCTTATGATATCGGAACCCGATTG
TGACCCGAACCTTAACAGCGTTCCGAACGGGAATTGTGGAACACCTTGGA
TAGCCGTTGCATATTTTGTCACTTTTATTCTTATCACGTATCTGATCATT
GTTAATATGTACATAGCGGTGATTTTAGAGAATTTCAACCAAGCACATGA
ACAAGAGGAAATCGGAATCACAGATGAAGATATTGAAATGTTTTATGCTG
TTTGGCAACTTTATGATCCACTAGCTACTCAATTTATTGATTATGAAAAG
CTACCCTTCTTGGTTGCAAACCTGGGACCTCCACTTGGTATACCATTCCC
GAATAAAGTAGCGGTTCACAATTTGGATTTACCTATGAATGATAGTGATG
AAATACATTGCATCGACGTTCTACAAGCGCTACTCAAACGTGTATTAGGT
AACATTGAAAACACGGATACCGAACATTATGATAACATGCGCAAAACGAT
CGATATGAAACTACAAGCTGCATTCCCGATGCGACAGAAAGAAGACCATA
AAACGACTACAATGGAACGTCTTCAGCAGGTCAAAGCCGCATCTACAATC
CAAAGACATTTTAGAAGCTGGAAAGCGCGTTCGATTGAACGGCAGCACCG
TATCTCAATCGGAGTTACAGATGAGAATTCATTACAAGTTCACCCTGAAG
AGACGCATAAATCTTCATTGCAAAGACTATTCACAGACAATAAGTTGACT
CGGACTTTAAGTTCGCTTTCTATTCGTTCTCCATTCGCGAGGAGGAGACT
AGATAGCTCATCATCTCAAGAAACGAAGACAAAATCACCAATAACGCGGT
CACTGAGCGCGTACAgcggtcgtaagagccttagtCGACCTGTAAATTTC
ACTGATAAATCTCCACCGACAAAAACGAGATCGATTTTACGGTCTAGTGA
AAGTGGCGGTTCACCATCGAGTGGTAAACTAAGTCAAAACACACTTAACT
CATCAAGTATTTCGTCCTCAACAACGGCAAAGAAAATGCCGGTCCGAAAA
CGTGGACACCAAGTCAGTTTCTACACGCCGCCGAGTATCGACGACGCGAC
GGCGCCGGTATTAGAAACAGAGCATCACGACCATTTAGACGGAATAGCGC
CCCATGAAGGTGATGACGACATATTCTATTCAGACGATGATAGTAATTCA
GATACAGATAATGAAGCgccaaaagatgaaaaatgtgCTTGTAGTGATTG
TAAAACTGAACAAAATGAGGCATCGGCGCGTAAAGGCCAACCGGCTAATA
TACATCTTATAGCGCCGTACAAAAAGCCTGAGACCGCTCCATCGTCAGTG
GGAAGCAGTAAAAACAGCGGAGGAACTTCATCCTCGATAGCAAATAAATC
ATTGATCAACTCATTGACTTCCTCACAGAAAACTGATACATCGGTTAAAA
CACATCAACTCACTAGCAGTTCAATCAATAGTAGTCTATCTGTTAGAGAT
ATGCCAAATGTCAAATTGTGAGCTGTttgttatattatttatttataaaa
gaaGACCCTGGACATTTTTATATTGTTTTACTCAGCAAACTCGTACCTAG
TGATTTTTGGTCTTGTAGTATAAAGAATTTGTGGGAATACAATGGAAATA
CAgctgacactctctaattcgatcttcaagggactaaATATTTTCTTAGA
AGAGATCACCTAAGTGAGAATGTGAATCACCTATTGTGGTTCTAAAATAA
AACAGAGATTTCGACACAATAGACTTTCCAACCATGGTATCCCCCATTGA
TCTCACCATATTGGAAGATCAGTGAAAACTTATCAAGCTGATATACAAAG
GACTCTAagtaattcgaacttctattattaaTTCTAATCTTTCTATGATT
TGAACTCTTCTTCTAGGAGAAACTCTTGtgtttttataattcgaattttt
ctgtaTTTCGAACAAACTAGACTCccgttcgaattagcgagaattATCTG
TGTAGCAAACAAACAAGACCTCCTGCTTTATATAAAGTGGTGCATTAGAG
TCTCTTTAGCTCGAAGTTTCCTTCACTCAGACAGATTTGTGTTCTCCGTT
CGACCTGTGGAGACTAAACTGTATTCCTATTTGAGAGCTTACAGACAGAA
TTGTATACCCAAAGAACTGGGTACGAGTTTGCTACCAATTGCTTGGAGTG
TTTGAAGGTGacgtttataaagaaaaagggAATTTTTAGTCTATGAAAAT
TTTATGTTTATTAATTGTTAATAGTAACCAAGATTTTATACCGATTTGCA
AAAAATAACTGCTATAAAAATATCATGTGACTTAATGTTAATATTATATT
GCTGGTCC Run BLAST on NCBI transcript from alignment at scaffold_477:321985..327207- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067903 ID=TCONS_00067903|Name=TCONS_00067903|organism=Clytia hemisphaerica|type=transcript|length=5223bp|location=Sequence derived from alignment at scaffold_477:321985..327207- (Clytia hemisphaerica)
TTGATCTGGGTATTGTTATATTATCTTTAATTGGTAAGTCATTCAGTGTT
TTTTAATGAAGTTTTTTTTGAATATTATTTGATCTGGGTATTGTTATATC
TTTAATTGGTAAGTCGTACGGTGTTTTTGGATAATGTGCAGTTTACGGTG
CTCATGGTCAAATTGTGGACCATTGGGTTTCACTGGTCCAGTTGTAATCA
ATATCTGTAATTTTTGAGGGATTTCTGATTCTGAAGACCGGAATAGCACT
GGGCCAGCGTTTGCCCAAATTATCATTTCAACTAGCACATGATTCGCCCA
AAGTCCCCACTGGTCCAGTTCGCACCCCTTTATTTATAAAGGAGGGGTGG
GTAGCGATGTTCATAAGAAAGGGGGGGGTCCATCTAGAAAGGGGGATGTC
AGTGGTGTGTTTTTTGTGTTTTCCCAAATTAGATTTTTGATTTACAATGC
AATTTCTAATTACTTTATTGGATGTTCGAAACATTCATTTCAAAACGATC
TTTCTTTTTTTGCAATGTGAGGGGGGTAGCATCAAATTTTAAAAGGGGGA
AGAACCTAGGGAAGGGGTAGCTCTAGGGTAGGGGGTAGTGACCCCCTTCC
AATTATCTTTAATCGGTCATACAGTGCTTTTTAATAAGAACCAATCAAGT
TTTGTAGAGACTAGTTTGCTTAATTTTAGAGAGAAATTGAGATGTTTTAG
ATTTTACCCAAAAGGTTTACCACTTTGACCCTTAAATTGCTTAAACCTCA
GAGTCAGGACTCGTTTTGTTCTTAAAGCGTTCTTATAATTTAGCCTTATT
ATTCTTATAAAATTGTCTTTATAAAAGTGTAAACAAAAATGATTTTATTC
TTTTTTCAGGGATCGTATTGGAATATTTAGATGTCGTCTTACAAGTGACA
CCAAGTGTTTTACGTGTAGCAAGGGTGCTACGTATCGGAAGGCTGCTTCG
TTATTTCAACAGCGCTAAAGGAATACGGCGTCTTTTAGTTGCTCTTGTTA
TCTCCTTACCAGCCCTCTTTAACATTGGCGCGCTTTTATTCCTTATATTA
TTCATCTATGCTATTATTGGAATGTCAAATTTTGGGTATGTTAAAAAGAA
CGGTGCACTAAATGAAGTAGTCAATTTCGAGACGTTTGGTAGTTCCATGA
TGGTGTTATTCCGATTGGCGACGTCTGCCGGCTGGAATGAAGTATTAGAC
GCTCTTATGATATCGGAACCCGATTGTGACCCGAACCTTAACAGCGTTCC
GAACGGGAATTGTGGAACACCTTGGATAGCCGTTGCATATTTTGTCACTT
TTATTCTTATCACGTATCTGATCATTGTTAATATGTACATAGCGGTGATT
TTAGAGAATTTCAACCAAGCACATGAACAAGAGGAAATCGGAATCACAGA
TGAAGATATTGAAATGTTTTATGCTGTTTGGCAACTTTATGATCCACTAG
CTACTCAATTTATTGATTATGAAAAGCTACCCTTCTTGGTTGCAAACCTG
GGACCTCCACTTGGTAAGAACATGTTTTTTCAGTACATTTACATACTCTA
ATTTGACTTTCTACTTTCGATACACTCTATTATTTGATAATGTTGGAATC
CATCGTCAACAAGAAACTCTCATAAAACATGCTCTAAATATTCGATACTC
TCTCAAATGCAACTACAACGAGATTAGACGATGCTATCGTCCGTTTAGAG
GGTCAGTAAACGCGGGAAAATGTATATGCACAGAGTCAGGGCGTCAGACC
GGTTTACGGGAAAAATAGTAGCGGTGGAGTTTGGAACAAAAAAACACCTC
CGTCACTGCTTACTCCACCCGGCACCGACTAACCGCTGTTTTCAAATTCA
TCCCGCCTCCTAAGCTTTTCCCTTTTTTAGTGATCTTGTGTACACGATAG
GATCGTCTACAACGAGATCATCTCTTGTGTCGCGAATTACCTCAGATTGC
GGTTCCGGAATAGTCCGTGATTCTTATGTTCTAAAAGGATTTCTTTTCAA
TATCCATCTACTTAACTTCAATGTCATTTTACGTGTATCGTAACGTTAAA
GTATATCTGAGATTGTCACATCAAATTCAATCATTCGCCCTACCAATTCA
TGCCCGGGGGGCACTCGATCTGAAAACGACCATACGTTCGGCCCAAAATT
TGGCTTCTAAAATCGGACCCTTACAGTGCAGTGAATTTCCATGAAAAATT
ATACCCTAACAGTGCACTTTTTCTAAATTTCTCGCCCGTAAGGGCGAAAA
CATTTGCAATTTTCCAAGAAAATGTGGAATTTTTCCTCCAAAATTGACCA
ATTTTGTGCCAATTTTACCAAAAAATTTACCTTTTATCACAATTTCCTAC
CCTTACAGTGCACTAGCTGAACTATGAAAAACCTACCCTTAAGGGCCGAA
CGTCTGGTAGGTCATTTACCTTGAGTGTCCCCCCCCCCCGGGAATTCATG
ATATTCATAACATTAATATTTTCTACGGAAACAACCAGGTTGAAAAATTT
TAAACAATTTTCTCTAACTTAAATTTGTCATCACTCCTGGCATAAACCAG
GGTGTTTTCCGAAGAAAAACCTTACGTCATGGATATCATAAAGCCCACTA
ATCTCTTTTAATTCAACTCTCATATTTTCCAGGTATACCATTCCCGAATA
AAGTAGCGGTTCACAATTTGGATTTACCTATGAATGATAGTGATGAAATA
CATTGCATCGACGTTCTACAAGCGCTACTCAAACGTGTATTAGGTATGTA
CTATTAATAATTGCATACACCTACTCTCAGGTGCCTAATAACCCCCCCCC
AGCTTGTTAATTTTTCGATTTTTCCAACCCCCTTCGGACCTTATTAAGAC
TCCCCACTTTATTAGTTTTTGACAACTTCTTTAGCTGTCAAAAGAAGAAT
CCCCTATTTTCCTCCCTATTTAAAGGTACAATTTCCTACCCACCCGGCAA
TTAGGTCCCCCATTCATTAAAATTAAGATTTTTCCATCCCCCCAAAAAAT
CAGAGATGCGCTCAGCCTAGTGAGGTCTACGATATTAGGGATGTAATTGA
TTATCTGATTAGCAACGAGCAAGGTTTGTAAAATCTTGATGCTCGAATCA
TAAATATAAATACAGTTGTCTCTTTCTAATTCGATCTTGATGGGCCCAAA
ATCGTTCTTCGAACTAGAGAAAGATTACAGAGAGTACATAATCTAAACCA
CTTTTCAGCTGAGGGGACCAATATTTTACTTCTATCGAATTGCAGAAAAA
TTCGAATAATAGAGGTTCGGATTAGAGAGATAGTTGACTGTATGTCTGCA
TTTTTAACTTCAGGTAACATTGAAAACACGGATACCGAACATTATGATAA
CATGCGCAAAACGATCGATATGAAACTACAAGCTGCATTCCCGATGCGAC
AGAAAGAAGACCATAAAACGACTACAATGGAACGTCTTCAGCAGGTCAAA
GCCGCATCTACAATCCAAAGACATTTTAGAAGCTGGAAAGCGCGTTCGAT
TGAACGGCAGCACCGTATCTCAATCGGAGTTACAGATGAGAATTCATTAC
AAGTTCACCCTGAAGAGACGCATAAATCTTCATTGCAAAGACTATTCACA
GACAATAAGTTGACTCGGACTTTAAGTTCGCTTTCTATTCGTTCTCCATT
CGCGAGGAGGAGACTAGATAGCTCATCATCTCAAGAAACGAAGACAAAAT
CACCAATAACGCGGTCACTGAGCGCGTACAGCGGTCGTAAGAGCCTTAGT
CGACCTGTAAATTTCACTGATAAATCTCCACCGACAAAAACGAGATCGAT
TTTACGGTCTAGTGAAAGTGGCGGTTCACCATCGAGTGGTAAACTAAGTC
AAAACACACTTAACTCATCAAGTATTTCGTCCTCAACAACGGCAAAGAAA
ATGCCGGTCCGAAAACGTGGACACCAAGTCAGTTTCTACACGCCGCCGAG
TATCGACGACGCGACGGCGCCGGTATTAGAAACAGAGCATCACGACCATT
TAGACGGAATAGCGCCCCATGAAGGTGATGACGACATATTCTATTCAGAC
GATGATAGTAATTCAGATACAGATAATGAAGCGCCAAAAGATGAAAAATG
TGCTTGTAGTGATTGTAAAACTGAACAAAATGAGGCATCGGCGCGTAAAG
GCCAACCGGCTAATATACATCTTATAGCGCCGTACAAAAAGCCTGAGACC
GCTCCATCGTCAGTGGGAAGCAGTAAAAACAGCGGAGGAACTTCATCCTC
GATAGCAAATAAATCATTGATCAACTCATTGACTTCCTCACAGAAAACTG
ATACATCGGTTAAAACACATCAACTCACTAGCAGTTCAATCAATAGTAGT
CTATCTGTTAGAGATATGCCAAATGTCAAATTGTGAGCTGTTTGTTATAT
TATTTATTTATAAAAGAAGACCCTGGACATTTTTATATTGTTTTACTCAG
CAAACTCGTACCTAGTGATTTTTGGTCTTGTAGTATAAAGAATTTGTGGG
AATACAATGGAAATACAGCTGACACTCTCTAATTCGATCTTCAAGGGACT
AAATATTTTCTTAGAAGAGATCACCTAAGTGAGAATGTGAATCACCTATT
GTGGTTCTAAAATAAAACAGAGATTTCGACACAATAGACTTTCCAACCAT
GGTATCCCCCATTGATCTCACCATATTGGAAGATCAGTGAAAACTTATCA
AGCTGATATACAAAGGACTCTAAGTAATTCGAACTTCTATTATTAATTCT
AATCTTTCTATGATTTGAACTCTTCTTCTAGGAGAAACTCTTGTGTTTTT
ATAATTCGAATTTTTCTGTATTTCGAACAAACTAGACTCCCGTTCGAATT
AGCGAGAATTATCTGTGTAGCAAACAAACAAGACCTCCTGCTTTATATAA
AGTGGTGCATTAGAGTCTCTTTAGCTCGAAGTTTCCTTCACTCAGACAGA
TTTGTGTTCTCCGTTCGACCTGTGGAGACTAAACTGTATTCCTATTTGAG
AGCTTACAGACAGAATTGTATACCCAAAGAACTGGGTACGAGTTTGCTAC
CAATTGCTTGGAGTGTTTGAAGGTGACGTTTATAAAGAAAAAGGGAATTT
TTAGTCTATGAAAATTTTATGTTTATTAATTGTTAATAGTAACCAAGATT
TTATACCGATTTGCAAAAAATAACTGCTATAAAAATATCATGTGACTTAA
TGTTAATATTATATTGCTGGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067903-exon-scaffold_477-1575043694:327175..327207 | TCONS_00067903-exon-scaffold_477-1575043694:327175..327207 | Clytia hemisphaerica | exon |
| TCONS_00067903-exon-scaffold_477-1575043694:325695..326348 | TCONS_00067903-exon-scaffold_477-1575043694:325695..326348 | Clytia hemisphaerica | exon |
| TCONS_00067903-exon-scaffold_477-1575043694:324465..324575 | TCONS_00067903-exon-scaffold_477-1575043694:324465..324575 | Clytia hemisphaerica | exon |
| TCONS_00067903-exon-scaffold_477-1575043694:321985..323894 | TCONS_00067903-exon-scaffold_477-1575043694:321985..323894 | Clytia hemisphaerica | exon |
| TCONS_00067903-exon-scaffold_477-1510915933:327175..327207 | TCONS_00067903-exon-scaffold_477-1510915933:327175..327207 | Clytia hemisphaerica | exon |
| TCONS_00067903-exon-scaffold_477-1510915933:325695..326348 | TCONS_00067903-exon-scaffold_477-1510915933:325695..326348 | Clytia hemisphaerica | exon |
| TCONS_00067903-exon-scaffold_477-1510915933:324465..324575 | TCONS_00067903-exon-scaffold_477-1510915933:324465..324575 | Clytia hemisphaerica | exon |
| TCONS_00067903-exon-scaffold_477-1510915933:321985..323894 | TCONS_00067903-exon-scaffold_477-1510915933:321985..323894 | Clytia hemisphaerica | exon |
| TCONS_00067903-exon-scaffold_477-1491911889:327175..327207 | TCONS_00067903-exon-scaffold_477-1491911889:327175..327207 | Clytia hemisphaerica | exon |
| TCONS_00067903-exon-scaffold_477-1491911889:325695..326348 | TCONS_00067903-exon-scaffold_477-1491911889:325695..326348 | Clytia hemisphaerica | exon |
| TCONS_00067903-exon-scaffold_477-1491911889:324465..324575 | TCONS_00067903-exon-scaffold_477-1491911889:324465..324575 | Clytia hemisphaerica | exon |
| TCONS_00067903-exon-scaffold_477-1491911889:321985..323894 | TCONS_00067903-exon-scaffold_477-1491911889:321985..323894 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:321985..327207 - |
Blast
BLAST of TCONS_00067903 vs. Swiss-Prot (Human)
Match: SCN9A (Sodium channel protein type 9 subunit alpha OS=Homo sapiens GN=SCN9A PE=1 SV=3) HSP 1 Score: 270.781 bits (691), Expect = 7.103e-75 Identity = 152/308 (49.35%), Postives = 215/308 (69.81%), Query Frame = 3
Query: 69 VTPSVLRVARVLRIGRLLRYFNSAKGIRRLLVALVISLPXXXXXXXXXXXXXXXXXXXGMSNFGYVKKNGALNEVVNFETFGSSMMVLFRLATSAGWNEVLDALMISEP-DCDPNL---NSVPNGNCGTPWIAVAYFVTFILITYLIIVNMYIAVILENFNQAHEQEEIGITDEDIEMFYAVWQLYDPLATQFIDYEKLPFLVANLGPPLGIPFPNKVAVHNLDLPMNDSDEIHCIDVLQALLKRVLGNIENTDTEHYDNMRKTIDMKLQAAFPMRQKEDHKTTTMERLQQVKAASTIQRHFRSWKAR 980
V+P++ RV R+ RIGR+LR AKGIR LL AL++SLPALFNIG LLFL++FIYAI GMSNF YVKK +N++ NFETFG+SM+ LF++ TSAGW+ +L ++ S+P DCDP S G+CG P + + YFV++I+I++L++VNMYIAVILENF+ A E+ ++++D EMFY VW+ +DP ATQFI++ KL A L PPL I PNKV + +DLPM D IHC+D+L A KRVLG ++ D++R ++ + +A P + + TTT++R Q+ +A+ IQR +R ++ R
Sbjct: 1604 VSPTLFRVIRLARIGRILRLVKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEDGINDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEFSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLG-----ESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVSATVIQRAYRRYRLR 1906
The following BLAST results are available for this feature:
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