TCONS_00067901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067901
Unique NameTCONS_00067901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1771

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067901 ID=TCONS_00067901|Name=TCONS_00067901|organism=Clytia hemisphaerica|type=transcript|length=1771bp
GTTGATAGAGAAATATGGCAATGGATTTAAGCAGAAAAGGAGCGAGCGGT
GAAAGGAAAATGTTGGGTATTCCGATTGTTTCATTAGCAGTTATAGCTGC
TGTATTCATGTGTGTTGTTTATTATGCTTCTGGATATGCTTCTGAAAACA
CTAAATTAATAGAAAAATATGGAATTGCTAGGACAAAAATTTTGAGCCTT
TCCAGAATGGTTGAGAAAATGAGCTCAAATCAAAAGATATGTCAAAGCAA
CCTTGGTCAAAATGAGCAATCAAATAAAGAGCTTACTCTGCAAGTTAGCC
GTTGCAAATCggcaaaagaagaagaagaaacaaagaGTAAACAATGTCAA
AGCCAGATAACTACCTTCCAGCGATTCTATTCTGCAGTGAAGgaaaaact
AAATCATGGAGAAAATGGGGAAGTAACAGCCACAGTTGACACAAAATCAG
ATTTGGATAACACTATAGATGGTATCGTTAAATTAAACGCCAAAATCTCT
AAACTTGAGGAAGATCAATCAAAATGTTCTGAAGTTGAGAAGGAGTTTGA
GGAATTGAAACGATCTACTGAAACAACAAATTCTCAGATCAAAGCACTTG
CGACAGAAAAGGAAGCACTAAATGACGAATTGAAAAATGTTCGAAAATTG
TTGGAAGAAGCTaatgcaaaaatttcaaatttcgacGACCATCAACATAA
AAGAagttttcaaaggaagaaaattcCTGAACAGGATAGAAATGTAAAAG
AGGAGATTCTCAATGAAAAGAAAGNATTCCTGAACAGGATAGAAATGTAA
AAGAGGAGATTcttaatgaaaagaaagaacaacCTAAGCCTGTCAACCAT
GAATCTGGGGTTGTAGATAGCTTAAACAAAGCCTCGTCTGTTTCTGGTAA
TAATAGTGCTAGTAGTGTAGTTCACAAAGCTATCAACGTCACTTCGAGTG
ATGCAAGAAATACAACACCCACAGAAGCTGATAGCGAACAAACCACAACC
AATACATCAACCTCTTTTACCAAGACTAATACCTCAACCGCGTCGCCAGA
GTTATCAACAACCACCAAGAAGGCTCTGGTCACAGAAGAAGACGACGATT
TGGAAGGTGGATTCAATGATACAGCAGGtgagaaaaattcgaaaacaaCA
ATTGCCCCGAGTAAACAAACCATAAAAAGCACACTTAATCTTAATCGTAC
TCTAAGCACGTCTTTTAACAACTCCGATAATAAAATGACCGTGAAAGCCA
ATGCAAGTGTAAGCAGTAGTATTCGTGGGGAAACTGTTGGAAATTCAACT
GAAAAGANCGATAATAAAATGACCGTGAAAGCCAATGCAAGTGTAAGCAG
TAGTATTCGTGGGGAAACTGTTGGAAATTCGACTGAAAAGAAAACCCATA
GTGTTATTGATGCCAATGTACGACCTGATATCTTGAGTAGGGAAagcgaa
aataaagaaaataacgaAAAAGTTATTGAGAAGAAAGGCGATGATAACTT
TATTGATTTCAACGAACGACCTGATATCACAAATAAAgaaaaggagaaga
aaaattctttgaaCGTAGAAAAAATTACAGACGTGGATTTGGATGAACTT
GACCAAGCTTGATGGAATTCAAACTCCAATGAACTCCTCTTATAATATTT
TCCTCAGTCTttaacattatcaaccaatataTATTCATACTAATTTTGGG
AGGATTTGCTTTGGAGTAGAATTGTTTTGTAACggtttttgtttaaaact
ttttctcggtcgaaatttgca
Run BLAST on NCBI

transcript from alignment at scaffold_477:264554..270915-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067901 ID=TCONS_00067901|Name=TCONS_00067901|organism=Clytia hemisphaerica|type=transcript|length=6362bp|location=Sequence derived from alignment at scaffold_477:264554..270915- (Clytia hemisphaerica)
GTTGATAGAGAAATATGGCAATGGATTTAAGCAGAAAAGGAGCGAGCGGT
GAAAGGAAAATGTTGGGTATTCCGATTGTTTCATTAGCAGTTATAGCTGC
TGTATTCATGTGTGTTGTTTATTATGCTTCTGGATATGCTTCTGAAAACA
CTAAATTAATAGAAAAATATGGAATTGCTAGGACAAAAATTTTGAGCCTT
TCCAGAATGGTTGAGAAAATGAGCTCAAATCAAAAGATATGTCAAAGCAA
CCTTGGTCAAAATGAGCAATCAAATAAAGAGCTTACTCTGCAAGTTAGCC
GTTGCAAATCGGCAAAAGAAGAAGAAGAAACAAAGAGTAAACAATGTCAA
AGCCAGATAACTACCTTCCAGCGATTCTATTCTGCAGTGAAGGTTAGTTT
TTATCTTTGTATATATCCAGACGATCTCAATCGAACCAGTCGAACCAAAT
CGAACGCAATCGACCGATTGAAATTCTATTGTCAAACGCGTTCGAATCTC
AATCGAAAATTACCACAATTTTCAGATTCGATTGCTGATATTCGATTGCA
TTCGATTGCTGATATTCGATTGCATTCGATTGATGTTCGATTGCATTCGA
TTGATGTTCGATTGCATTCTATTAGGATCCGACCCTTAGAGAGACTAATC
TTTGTTAAAAAGCTGACCCTTTTCGAAATCCTCTCGTTGATTCGATTCTT
TTGAGCTATATATATGAGAGTTAATTAAGGAATAATGGGAAGCGGTGCGC
GTCACGCAAAATATATTTGGGACATGCCTTGTTTCACCCGAACAATTGAA
TGCAGTCGAATGACAATCAAACCAGTCGAATAACAATCGAACCAAGTGAA
TATTACTCAGAATTTTGACAATCGAATTTCAATCGGTCGATTGCGTTCGA
TTTGGTTCGACTGGTTCCATCGTCGATTCCGTTCGATTCCGTTCGATTGA
GATCGTCTGGATATAATATTGTGAATTTTAAGAGCGAACTATATTCAAAA
TAGACACTTTGAAAATATCATGATGGCCATCCAAAGAAGGATCTTGAATC
AATTAAGGGGACTACCGTCAACTGCTCTAACTTTGAACTATCTGACAAAA
CATGGGACAGCATGATGCAATTCGGCCACCATCAGTCACGGGGTGTGCAT
TTGCAACGGTTTCAACGATTTTTTCCAACATTGTGCACATAAGCTAGAAC
GTGTAAGGCAAAATGCGCTAAAATTAACAAATCTCAACTTTAAAATGAAA
ATTGGCATAAAACGAAGACGAATGGCATTTTCATTTTCTCTTTAGAAGAT
TCTTTAGCCTTTTTAGAAAGTGTTTGTCTGCGGGTTAAAACTTTGATCTG
TGCATTTTTTTATAATCAAGTGTAACATTTTTCCACTCTGTGTAGATGCA
ACGGGTTGCAGTGATCGAGTGTATTTGCACAGGGTTTTTTCGTCACTTTG
GTTTTCGACCCGTTGCATTTGCCGCATGTCGAACCCTGTGCAAATGCAAG
GATTTCCGTGACTGACCATTTCACAGAACCTCCAAAGTCATTTGATTTGA
GTTAATGAACGGCGTTTTAAAAAATACACGATTTCTCTTTCGCACCGAGT
AAATTTTAGCAAGACAGTAATTATTTTAATCTTGGGGAGGACTGATTTTG
GCCAATTCGTTAAAACATTTAAGATTTTAAAAAATAGGTGAAAATGAAAA
TGTCCAAGGAGGGCATTATGTCACTCTCCTTTGACTCCTGGGATAATATC
AAGAAGGTCGTTTCTTTTTCATTTATTTGCATAAGTCTAAAAGAGTTAAC
TTCACAAATAGAATCACTGATCATTACTTCACAGTCATGGAGGAACTTTT
TTTTTCAGAATCTCTGTGAATGACATGATAAGGGGGTTGCTGACATAAGA
GCAATTTACAGTATAGTTTTTGAACAAAATAAGAAGTATTTTCCCTGAAA
ATCACTCACATTGGCACTGTGGTATAATAGTGGTCTTGACTTAGGTCACT
GCACAGGCGACTGATTCGATTCCCACTTGCAGTAGATCACTTGGCAAGTG
AATGAACTTTTGAACTTTTGCCCGGGTCAACCCGTACCATGTGAGGGGAA
TTGGGTAGTCAGTCCTAGGTGCTGACGGGACGCTCATAGAAAGCAGCTAT
AGTGGCGAAAATAGGCTTCAAAGCCTCCTGCAACTCAACCATATAGAAAT
AGAAATTGTGGCCGAGTTAGAAGGAGGCTGTGAAAAAGACCTGATTTTTT
TGGACCTACCCCGGTGGGGTGGAAGTCCTATAATTTAACCTTTGTCTGTT
CGTTCGTCCGTTCGTTATTAGCTTTCCTAGTGATTGGCTCGTTAGTTTTT
TCTGATTTTTTGCACAAAGATGTGTAACGATAAACCCTCGAATATTACTA
AGCCTGATTTTCGAAAAAAATTGTTGGGCAAATTTGGGTCAAAAAACGGC
TAAAAAACAGATCATTAACTTTTTCTGATTTTTTGCACAAAGATGTGTAG
CGATAAACCCTCGAATATTACTAAGCCTGATTTTCGAAAACAATTGTTGG
GCAAATTTGGGTCAAAAAACGGCTAAAAAACAGAACATTAACTTTTTCTG
ATTTTTTGCATGAAAGTAGGGTACCATCATGGTAAAAGATCGCTCAAGCA
GATTTTTTCAAAAAAGTTTTGTTGGCTCAAAAAACGCATGTTTATCTATA
AGAATCACTATTAATAGGCATTCATCAATGTTCTTAGCCAAATTACTCAA
TTTTTTGATGAGATAGATATTTTTTTTGCTCACAAAGTCTTAAAATATGA
AAGAATATTTCAAGAGCATGAAATTTTTGNAACGTTTTTTTTATAAGAAA
CAAACGACTAATTTTAATAGATCGTCACTATTTGTGTTCTGAATGATTGT
TTAATGGTCACGCTCACGTAGATATCAATTACATAAAAATTAAGAAACGT
TGTATTTCTTTTCAATATAATCAACTGATGAATGCGTAAGCAAGAAACTT
TAAGTATTGAAAAGAAATACAACGTTTCTTAATTTTTATGTATCAAGCTC
TACTTATGTATCGAGCACTCCTAATTGATACCTACTTCTTGTGTTTCTCT
GCACAATTAAGAGTGCTCGATACATAAGTAGATATGTGTTAAATGCATAA
CCTGTTAGGTCCATAAAAGTATCACTTGTTAATCCTGGATTAGTTTATTA
AATCGATTTCAATCAGTTACGAATTTCAATTTGTTTGACTATGGGATGAC
CTATTGAATGCAATCTGAATAATTAATGACCTCCTTCTGCCAGGAATTAT
TCATTCCGACAAAAAGTTTTTCTCTGTAACACAGTATCATTATTTTTTTG
TTTTTTTAGGAAAAACTAAATCATGGAGAAAATGGGGAAGTAACAGCCAC
AGTTGACACAAAATCAGATTTGGATAACACTATAGATGGTATCGTTAAAT
TAAACGGTAAAATGTCTTGCATGATATCTATTATATTAACTGATTGAAAT
TGATTTTTTATGATTCTCGGGGGTAGGTTATATACCAGGATTGTCAGATG
ACGGGTATGGCCAAAAAAGTTAGAAAATCGATCCTTACTTAGAGAGACTG
AATTTGAAAATGTTGTCTATCTTTGACTTTTTTGTCACCCTTAGAGAGAC
ATTTCCCCGAAATTCCAGCCAATGTTTTTAAATTTTAGTCCAAATTCAAG
AATTTATTCAATTGAGTCAATTTTTTATTTTCGTAAATTTGGAACCCTCA
ATTTGCTTTTTTATGGTTTTTTGCCTCGAGGGACTTTTGAGGGTGTGAAA
AAGGGACCCTTGGCTCACACATACCTCCATCCCAATCAGTAAATATTTTT
CAGAAAATAGTACTTTACTTATAAATATTGTTTTAATGTTTCTAAAGTCT
TATTGCATATTTAACTTAAAGTATTCATAATTATAGCCAAAATCTCTAAA
CTTGAGGAAGATCAATCAAAATGTTCTGAAGTTGAGAAGGAGTTTGAGGA
ATTGAAACGATCTACTGAAACAACAAATTCTCAGATCAAAGCACTTGCGA
CAGAAAAGTAAGCTGATGTTTTTATTTTTAGTAAATTTTGGTGAAAAGAA
ACGTGCATTGTGAAGAATTGTTGAAAACAAGCATCTTTACTACTTTAATT
GTAGAAATTTTAGCGAGACTAATTTTAGCGTATATTAGCGAGCCAGAAAA
ATCTTGATTTTTTTTGTATTTATTTTAGCGAATCATGATTTCAAAAAATT
TCGCGTGGATAAACTTTAGCGAATACTCGTATTACATTATTGACCAAATT
AGTTTTCTAGCATTTCTTTGCACTGAAACCCTTCCTATTGATAAAAATGT
ATCAAAGCAATATAACCAGAAATTTCGCATGGATAAATTTTAGCGATCTG
TCGTTTCGGTGTGTTTTAGCGAGATTTATTTTAGCGAAAATATGGAAAAC
TCGCTAAAACGCTAAAATTAGTCTCGCTAAAATTTCTACGATTAAAGTAT
TCAACTAAGTTGCTGAAAGGGAAAATTGCATAGTAAAGTATCTATTTTAA
AATTGATTCCAAATTAACTATTTATTTATAATTACCTACATTTATCATAG
GGAAGCACTAAATGACGAATTGAAAAATGTTCGAAAATTGTTGGAAGAAG
CTAATGCAAAAATTTCAAATTTCGACGACCGTGAGTTCTTCTAAATCATT
TTTTAATTTTTTATTCAGATTAAACTGTCTTCAAGCCATGAAACTACATG
GAATGAACGATCAGGATTTAATATTGATTGTCTAGTTTAAGACCATGTTC
AGATGTAACGGAATCGTATATGGTTTCCGTATTTCCGGTATGGTTTCCGT
TACGGATCGAGAGTGTTCATATTGGTTTCAGAACGTTTCGGAGCAAGAAA
ACGGAGCAATTCCATTCCGATGAAAAAAGTGGAGCAAAACCGTTTTTTAT
CCGTTTTGCTTTGTTTCTTCATTGACGTTTCCGATTTTGACGTTCACATT
GTTTCGAAACTGTTTTGTTCTAGAACTATATGGAACCGTAACGCCTGAAT
ATGATCTTAGAAGGCTTACTTTGTAATGATTTATTCGTGAGCTCAACGTT
TGCTTGAAGTGGCTCCTCTCAAGTGGAATATAGCGTTCCCAATGTCTTCC
ATTATTATATTCTTCCATGCAATANGACTCCTCTCAAGTGGAATATAGCG
TTCCCAATGTCTTCCATTATTATTTTCTTCCATGCAATTTAAAGTATAGA
ATGATAATATATTATTATTCTCTATTTTCAGATCAACATAAAAGAAGTTT
TCAAAGGAAGAAAATTCCTGAACAGGATAGAAATGTAAAAGAGGAGATTC
TCAATGAAAAGAAAGNATTCCTGAACAGGATAGAAATGTAAAAGAGGAGA
TTCTTAATGAAAAGAAAGAACAACCTAAGCCTGTCAACCATGAATCTGGG
GTTGTAGATAGCTTAAACAAAGCCTCGTCTGTTTCTGGTAATAATAGTGC
TAGTAGTGTAGTTCACAAAGCTATCAACGTCACTTCGAGTGATGCAAGAA
ATACAACACCCACAGAAGCTGATAGCGAACAAACCACAACCAATACATCA
ACCTCTTTTACCAAGACTAATACCTCAACCGCGTCGCCAGAGTTATCAAC
AACCACCAAGAAGGCTCTGGTCACAGAAGAAGACGACGATTTGGAAGGTG
GATTCAATGATACAGCAGGTGAGAAAAATTCGAAAACAACAATTGCCCCG
AGTAAACAAACCATAAAAAGCACACTTAATCTTAATCGTACTCTAAGCAC
GTCTTTTAACAACTCCGATAATAAAATGACCGTGAAAGCCAATGCAAGTG
TAAGCAGTAGTATTCGTGGGGAAACTGTTGGAAATTCAACTGAAAAGANC
GATAATAAAATGACCGTGAAAGCCAATGCAAGTGTAAGCAGTAGTATTCG
TGGGGAAACTGTTGGAAATTCGACTGAAAAGAAAACCCATAGTGTTATTG
ATGCCAATGTACGACCTGATATCTTGAGTAGGGAAAGCGAAAATAAAGAA
AATAACGAAAAAGTTATTGAGAAGAAAGGCGATGATAACTTTATTGATTT
CAACGAACGACCTGATATCACAAATAAAGAAAAGGAGAAGAAAAATTCTT
TGAACGTAGAAAAAATTACAGACGTGGATTTGGATGAACTTGACCAAGCT
TGATGGAATTCAAACTCCAATGAACTCCTCTTATAATATTTTCCTCAGTC
TTTAACATTATCAACCAATATATATTCATACTAATTTTGGGAGGATTTGC
TTTGGAGTAGAATTGTTTTGTAACGGTTTTTGTTTAAAACTTTTTCTCGG
TCGAAATTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042408XLOC_042408Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067901-exon-scaffold_477-1575043694:270524..270915TCONS_00067901-exon-scaffold_477-1575043694:270524..270915Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1575043694:267460..267556TCONS_00067901-exon-scaffold_477-1575043694:267460..267556Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1575043694:266859..266979TCONS_00067901-exon-scaffold_477-1575043694:266859..266979Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1575043694:266236..266315TCONS_00067901-exon-scaffold_477-1575043694:266236..266315Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1575043694:264554..265634TCONS_00067901-exon-scaffold_477-1575043694:264554..265634Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1510915933:270524..270915TCONS_00067901-exon-scaffold_477-1510915933:270524..270915Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1510915933:267460..267556TCONS_00067901-exon-scaffold_477-1510915933:267460..267556Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1510915933:266859..266979TCONS_00067901-exon-scaffold_477-1510915933:266859..266979Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1510915933:266236..266315TCONS_00067901-exon-scaffold_477-1510915933:266236..266315Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1510915933:264554..265634TCONS_00067901-exon-scaffold_477-1510915933:264554..265634Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1491911889:270524..270915TCONS_00067901-exon-scaffold_477-1491911889:270524..270915Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1491911889:267460..267556TCONS_00067901-exon-scaffold_477-1491911889:267460..267556Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1491911889:266859..266979TCONS_00067901-exon-scaffold_477-1491911889:266859..266979Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1491911889:266236..266315TCONS_00067901-exon-scaffold_477-1491911889:266236..266315Clytia hemisphaericaexon
TCONS_00067901-exon-scaffold_477-1491911889:264554..265634TCONS_00067901-exon-scaffold_477-1491911889:264554..265634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:264554..270915 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
137.69	144.698	43.4475	31.462	56.2947	43.1678	82.0974	84.3461	43.0317	39.0799	22.7804	23.782	18.2662	14.7555	13.5858	15.3374	33.2278	31.4745	9.73137	19.2041	22.311	21.7305	50.7645	48.5859	34.5925	40.9151	18.9721	12.0825	21.5319	24.134
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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