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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067889 ID=TCONS_00067889|Name=TCONS_00067889|organism=Clytia hemisphaerica|type=transcript|length=3246bp
ggtttacacctaaaattttctggaattccaaggggttACAGTATTTCCAG
CAACAAAAGTTTGCATCTCCTCATCAGGGGGTATACAGTTTTTTCTGGAA
ACGCCCATTAAAAACTAACTTTCCatagaggttttacaaaaatttaaaat
ttaaattgtaTTTTGTATATCTTATTTTAACGGTAGACTTGAAGCAAAAT
CAGTTCTCTGAGTCACATAAATTAGTTCCCTCAAAGTAAAGGTTTATGAA
AGAGTCGAGAAAGGTATCATCTGGCCGGCCAAGGTTTTGactaaaaaacg
aaaaactaACACAAAGTTTGAGAATTTTAAACCCAAACAagaatattatt
ttttctaatgcagaaaacactaaaaattaaaaaaaaataattattacaTA
GTCTAAAATAAAAGTGCTACAGTTGAAAATTAACCTATTTTGGGAAGTCA
TAAAATACGGAATTCTTTTATACTAAATTActaataaaaaaactaaatca
ATTTACAAACTTGTTATTTTAACAATATTCTAACTTAGTAAACTTTTTAt
cccaaaaaaagtaaaatatttgtAATAAATGATTCTGTAAAGTTCTTTAG
AAATCGAAAATATGATTAGGAATAGTCGAATAATTATTAGATACAaaaga
aacaagcaacatgctgaatgcaCCTACCAGATATAGCAAGTCGGAAACAT
GCTGAGTGGAAATGAAAATATtcgaacaaaaaagaaaagagaacaGCATA
GCATAGAGATACGTTAGCTTGAAAAACATGGTGCAACTTGTTTCACGTTG
GCTTTCCGATGTCTTAGAGCGAAGGAGCCCCAAGGAGGTTAGGGCAGATT
CGAAAAAATCCTTTAAACATTACCATTTTACACCATTgcacaaaaaatca
gaaaaaaatactaaGGCAGtcgcgagaaatgctcattttcccctaaaaat
gataaaagggaatttcccacgaaaaaaaaaattctaatttttccaGACAA
AACGTCTACAACCACTTTTTAAAGACCTTGCCTGCTAACTTTAtgcaaaa
taatctgaaaaaaaaatctgaagcaATCTCATACAAAGCCAAAacaccct
atttttaggcactttttggccaaaatttgccctaaaaattttttcccgaa
aatGGGGCTCCATCACTTTTTGTATGActccggggtaggtccaaaaatga
tttttcaaatgtttctatAATCAACAAGatatataataaatatttcACCT
CTTTTCTGTTTTAGTGAACATAAGACTTCTTTAATTTAGTGCAGCTCGCG
AAATTAGGAGAAAAGTGTGTCAGAAAAAATATTGCACAGGGGGTGTTGAG
GATATTGGACACCAAGAGAGGTCTATAAGATGACATCGATTTTAGGATAT
ACAAAAAGGTGAAGCAAgcataccttaagtggataaattttggcatggat
ttaatttggcgaatgaccaaaaagcgatttttggcggggatttaatttgg
cgaatgctCAATTGTGTAAAATTTaacggggatttaatttggtgagTGGG
AAGGCTTTAGTCTCTGGTGAACTACAAAATACGCGGTATTATATTTACTA
AGAAATACATATTCTCCATAGAATttctatctttaaaaaatttcattaaa
tttggcggggatttatcTTAGCGAATGGCcgatatttggaaaaaatcgcc
aaattcgccaaatttaatccccgccaaaatttatccacttaaggtatgtt
TGAAATAGTCTTCAAGATTCAATTTTATGCCtaaatcaaaatgagaaaat
gtgaAAATAGTCCATAAATTAACATCCTCAACACGATTCTGTATAATTAT
TTTCTGGAAATGCCCATCAACATACAATCCTATTACTTTGTTACGTTTGA
TTACTATAAAGGCTGATTAAGGATGCAAGcttaaaattttaataataaaa
taaaataatatctttTATCCTAGGACAGAGAATACTTCAGTTTTATTATG
AGCTGGTTGTACACCCGAAGCTTTGTGAAAGCGATTCTCAAAATAACAAA
CTCCAGTGATAACAAAATAACCCAACATTACAAACATGATCTTCAGTAAT
TTCCTATCCACAATATTCAACTCGTGAGGAAGAACTTCGAAAAACGTAAC
ATACAAGAAAGTTCCTGTCGCTATTCCTTGAAGAATTCCAGATATAAAAG
TTTTGATGACCTTGTCTAGAGATTTTAACAACAACATTCCAAGGCCAACT
CCTAATGGAGCCATAGCTGCAAAAATAGCCaagcaaatcaaaacaacact
tGTTGGGAGATCAGCATCCACTAATTGAACACCAATCGAAAAAGAAATGA
TACTTTTGTGAATAAGTAGAGCGACCAAAATCTGTAGTAAAACTTGCGTT
TTGACCAACAATCCAACGGATAACCCTTCAAACAAAGAATGAAGTGAAAT
AGCAAACACCATCATGTATAATCGAAAGTTTGATGTACTGACGGATTGCA
TAGAAGCAAGACTTTTTGTTCTGGTTCTGTGTAATTTTCTTACTCTATGT
CGGGTTCCATTATTTGAAACAAAGGAATTATAAGAGCCACTTTGTTCAAA
TTCTTCTTCAGAATCAGTATAGGAAATTGAATTTCCACTCAAGATGGTGC
TTGGACCAATTGCAACTGTTTTCTTATTCTGGTTTATCGGGCCTGCAGAT
TGCATTATGGTATCATCTGGTGGAGCATCAGGGAGTAATTGATGTGTTTC
ATCAGGATCATTTTCAAAAACCATATCACTACCAACTTTACCATGACTGT
GACCATGGTTGAGGAAATTTGAATTAGAACAACAGCTTTCAACAAGTTGT
TCCAAAATCAACATAAAGATAAAACCAAAACCAATGATGAAGTCACCTAA
TGGAAAATCGGTCTGGATATCAACAAGATCCAAGGCTTCATCCATTTTCT
CGCGTACATCTGGAAACAAATCTAGAATGACTGTACTGAAAAATACACCA
CCAGCAAAACAATTTGATAAACTAATTAATAATTTGCGCATAGatccatt
ttctttatttcttgtaTTTACATCTCGTTGAAGTTTCAATGGTAGAGCAC
CAAATATCATTGATAGCAAGAAAAGTATGAATGTACCAACTACCTTCACC
GCCCACTGCGGGACCCTGTCTAATACAGACATGTTAAGTTTTAATGTTTA
GTCTAAAAGTAACAGAAAATATATTATGAATTTGAGATAATCACCA Run BLAST on NCBI protein sequence of TCONS_00067889-protein >TCONS_00067889-protein ID=TCONS_00067889-protein|Name=TCONS_00067889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
MSVLDRVPQWAVKVVGTFILFLLSMIFGALPLKLQRDVNTRNKENGSMRK
LLISLSNCFAGGVFFSTVILDLFPDVREKMDEALDLVDIQTDFPLGDFII
GFGFIFMLILEQLVESCCSNSNFLNHGHSHGKVGSDMVFENDPDETHQLL
PDAPPDDTIMQSAGPINQNKKTVAIGPSTILSGNSISYTDSEEEFEQSGS
YNSFVSNNGTRHRVRKLHRTRTKSLASMQSVSTSNFRLYMMVFAISLHSL
FEGLSVGLLVKTQVLLQILVALLIHKSIISFSIGVQLVDADLPTSVVLIC
LAIFAAMAPLGVGLGMLLLKSLDKVIKTFISGILQGIATGTFLYVTFFEV
LPHELNIVDRKLLKIMFVMLGYFVITGVCYFENRFHKASGVQPAHNKTEV
FSVLG Run BLAST on NCBI transcript from alignment at scaffold_477:517053..520298+ Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067889 ID=TCONS_00067889|Name=TCONS_00067889|organism=Clytia hemisphaerica|type=transcript|length=3246bp|location=Sequence derived from alignment at scaffold_477:517053..520298+ (Clytia hemisphaerica)
ggtttacacctaaaattttctggaattccaaggggttACAGTATTTCCAG
CAACAAAAGTTTGCATCTCCTCATCAGGGGGTATACAGTTTTTTCTGGAA
ACGCCCATTAAAAACTAACTTTCCatagaggttttacaaaaatttaaaat
ttaaattgtaTTTTGTATATCTTATTTTAACGGTAGACTTGAAGCAAAAT
CAGTTCTCTGAGTCACATAAATTAGTTCCCTCAAAGTAAAGGTTTATGAA
AGAGTCGAGAAAGGTATCATCTGGCCGGCCAAGGTTTTGactaaaaaacg
aaaaactaACACAAAGTTTGAGAATTTTAAACCCAAACAagaatattatt
ttttctaatgcagaaaacactaaaaattaaaaaaaaataattattacaTA
GTCTAAAATAAAAGTGCTACAGTTGAAAATTAACCTATTTTGGGAAGTCA
TAAAATACGGAATTCTTTTATACTAAATTActaataaaaaaactaaatca
ATTTACAAACTTGTTATTTTAACAATATTCTAACTTAGTAAACTTTTTAt
cccaaaaaaagtaaaatatttgtAATAAATGATTCTGTAAAGTTCTTTAG
AAATCGAAAATATGATTAGGAATAGTCGAATAATTATTAGATACAaaaga
aacaagcaacatgctgaatgcaCCTACCAGATATAGCAAGTCGGAAACAT
GCTGAGTGGAAATGAAAATATtcgaacaaaaaagaaaagagaacaGCATA
GCATAGAGATACGTTAGCTTGAAAAACATGGTGCAACTTGTTTCACGTTG
GCTTTCCGATGTCTTAGAGCGAAGGAGCCCCAAGGAGGTTAGGGCAGATT
CGAAAAAATCCTTTAAACATTACCATTTTACACCATTgcacaaaaaatca
gaaaaaaatactaaGGCAGtcgcgagaaatgctcattttcccctaaaaat
gataaaagggaatttcccacgaaaaaaaaaattctaatttttccaGACAA
AACGTCTACAACCACTTTTTAAAGACCTTGCCTGCTAACTTTAtgcaaaa
taatctgaaaaaaaaatctgaagcaATCTCATACAAAGCCAAAacaccct
atttttaggcactttttggccaaaatttgccctaaaaattttttcccgaa
aatGGGGCTCCATCACTTTTTGTATGActccggggtaggtccaaaaatga
tttttcaaatgtttctatAATCAACAAGatatataataaatatttcACCT
CTTTTCTGTTTTAGTGAACATAAGACTTCTTTAATTTAGTGCAGCTCGCG
AAATTAGGAGAAAAGTGTGTCAGAAAAAATATTGCACAGGGGGTGTTGAG
GATATTGGACACCAAGAGAGGTCTATAAGATGACATCGATTTTAGGATAT
ACAAAAAGGTGAAGCAAgcataccttaagtggataaattttggcatggat
ttaatttggcgaatgaccaaaaagcgatttttggcggggatttaatttgg
cgaatgctCAATTGTGTAAAATTTaacggggatttaatttggtgagTGGG
AAGGCTTTAGTCTCTGGTGAACTACAAAATACGCGGTATTATATTTACTA
AGAAATACATATTCTCCATAGAATttctatctttaaaaaatttcattaaa
tttggcggggatttatcTTAGCGAATGGCcgatatttggaaaaaatcgcc
aaattcgccaaatttaatccccgccaaaatttatccacttaaggtatgtt
TGAAATAGTCTTCAAGATTCAATTTTATGCCtaaatcaaaatgagaaaat
gtgaAAATAGTCCATAAATTAACATCCTCAACACGATTCTGTATAATTAT
TTTCTGGAAATGCCCATCAACATACAATCCTATTACTTTGTTACGTTTGA
TTACTATAAAGGCTGATTAAGGATGCAAGcttaaaattttaataataaaa
taaaataatatctttTATCCTAGGACAGAGAATACTTCAGTTTTATTATG
AGCTGGTTGTACACCCGAAGCTTTGTGAAAGCGATTCTCAAAATAACAAA
CTCCAGTGATAACAAAATAACCCAACATTACAAACATGATCTTCAGTAAT
TTCCTATCCACAATATTCAACTCGTGAGGAAGAACTTCGAAAAACGTAAC
ATACAAGAAAGTTCCTGTCGCTATTCCTTGAAGAATTCCAGATATAAAAG
TTTTGATGACCTTGTCTAGAGATTTTAACAACAACATTCCAAGGCCAACT
CCTAATGGAGCCATAGCTGCAAAAATAGCCaagcaaatcaaaacaacact
tGTTGGGAGATCAGCATCCACTAATTGAACACCAATCGAAAAAGAAATGA
TACTTTTGTGAATAAGTAGAGCGACCAAAATCTGTAGTAAAACTTGCGTT
TTGACCAACAATCCAACGGATAACCCTTCAAACAAAGAATGAAGTGAAAT
AGCAAACACCATCATGTATAATCGAAAGTTTGATGTACTGACGGATTGCA
TAGAAGCAAGACTTTTTGTTCTGGTTCTGTGTAATTTTCTTACTCTATGT
CGGGTTCCATTATTTGAAACAAAGGAATTATAAGAGCCACTTTGTTCAAA
TTCTTCTTCAGAATCAGTATAGGAAATTGAATTTCCACTCAAGATGGTGC
TTGGACCAATTGCAACTGTTTTCTTATTCTGGTTTATCGGGCCTGCAGAT
TGCATTATGGTATCATCTGGTGGAGCATCAGGGAGTAATTGATGTGTTTC
ATCAGGATCATTTTCAAAAACCATATCACTACCAACTTTACCATGACTGT
GACCATGGTTGAGGAAATTTGAATTAGAACAACAGCTTTCAACAAGTTGT
TCCAAAATCAACATAAAGATAAAACCAAAACCAATGATGAAGTCACCTAA
TGGAAAATCGGTCTGGATATCAACAAGATCCAAGGCTTCATCCATTTTCT
CGCGTACATCTGGAAACAAATCTAGAATGACTGTACTGAAAAATACACCA
CCAGCAAAACAATTTGATAAACTAATTAATAATTTGCGCATAGatccatt
ttctttatttcttgtaTTTACATCTCGTTGAAGTTTCAATGGTAGAGCAC
CAAATATCATTGATAGCAAGAAAAGTATGAATGTACCAACTACCTTCACC
GCCCACTGCGGGACCCTGTCTAATACAGACATGTTAAGTTTTAATGTTTA
GTCTAAAAGTAACAGAAAATATATTATGAATTTGAGATAATCACCA Coding sequence (CDS) from alignment at scaffold_477:517053..520298+ >TCONS_00067889 ID=TCONS_00067889|Name=TCONS_00067889|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at scaffold_477:517053..520298+ (Clytia hemisphaerica)
tTATCCTAGGACAGAGAATACTTCAGTTTTATTATGAGCTGGTTGTACAC
CCGAAGCTTTGTGAAAGCGATTCTCAAAATAACAAACTCCAGTGATAACA
AAATAACCCAACATTACAAACATGATCTTCAGTAATTTCCTATCCACAAT
ATTCAACTCGTGAGGAAGAACTTCGAAAAACGTAACATACAAGAAAGTTC
CTGTCGCTATTCCTTGAAGAATTCCAGATATAAAAGTTTTGATGACCTTG
TCTAGAGATTTTAACAACAACATTCCAAGGCCAACTCCTAATGGAGCCAT
AGCTGCAAAAATAGCCaagcaaatcaaaacaacacttGTTGGGAGATCAG
CATCCACTAATTGAACACCAATCGAAAAAGAAATGATACTTTTGTGAATA
AGTAGAGCGACCAAAATCTGTAGTAAAACTTGCGTTTTGACCAACAATCC
AACGGATAACCCTTCAAACAAAGAATGAAGTGAAATAGCAAACACCATCA
TGTATAATCGAAAGTTTGATGTACTGACGGATTGCATAGAAGCAAGACTT
TTTGTTCTGGTTCTGTGTAATTTTCTTACTCTATGTCGGGTTCCATTATT
TGAAACAAAGGAATTATAAGAGCCACTTTGTTCAAATTCTTCTTCAGAAT
CAGTATAGGAAATTGAATTTCCACTCAAGATGGTGCTTGGACCAATTGCA
ACTGTTTTCTTATTCTGGTTTATCGGGCCTGCAGATTGCATTATGGTATC
ATCTGGTGGAGCATCAGGGAGTAATTGATGTGTTTCATCAGGATCATTTT
CAAAAACCATATCACTACCAACTTTACCATGACTGTGACCATGGTTGAGG
AAATTTGAATTAGAACAACAGCTTTCAACAAGTTGTTCCAAAATCAACAT
AAAGATAAAACCAAAACCAATGATGAAGTCACCTAATGGAAAATCGGTCT
GGATATCAACAAGATCCAAGGCTTCATCCATTTTCTCGCGTACATCTGGA
AACAAATCTAGAATGACTGTACTGAAAAATACACCACCAGCAAAACAATT
TGATAAACTAATTAATAATTTGCGCATAGatccattttctttatttcttg
taTTTACATCTCGTTGAAGTTTCAATGGTAGAGCACCAAATATCATTGAT
AGCAAGAAAAGTATGAATGTACCAACTACCTTCACCGCCCACTGCGGGAC
CCTGTCTAATACAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00067889-exon-scaffold_477-1491911889:517053..520298 | TCONS_00067889-exon-scaffold_477-1491911889:517053..520298 | Clytia hemisphaerica | exon |
| TCONS_00067889-exon-scaffold_477-1510915933:517053..520298 | TCONS_00067889-exon-scaffold_477-1510915933:517053..520298 | Clytia hemisphaerica | exon |
| TCONS_00067889-exon-scaffold_477-1575043694:517053..520298 | TCONS_00067889-exon-scaffold_477-1575043694:517053..520298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:517053..520298 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003689 | ZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0030001 | metal ion transport |
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046873 | metal ion transmembrane transporter activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0030001 |
metal ion transport |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0046873 |
metal ion transmembrane transporter activity |
Blast
BLAST of TCONS_00067889 vs. Swiss-Prot (Human)
Match: S39A1 (Zinc transporter ZIP1 OS=Homo sapiens GN=SLC39A1 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.965e-25 Identity = 62/176 (35.23%), Postives = 107/176 (60.80%), Query Frame = -2
Query: 2037 NNGTRHRVRKLHRTRTKSLASMQSVSTSNFRLYMMVFAISLHSLFEGLSVGLLVKTXXXXXXXXXXXIHKSIISFSIGVQLVDADLPTSVVLICLAIFAAMAPLGVGLGMLLLKSLDKVIKTFISGILQGIATGTFLYVTFFEVLPHELNIVDRKLLKIMFVMLGYFVITGVCYFE 2564
N G +H H AS + S R ++VF+++LHS+FEGL+VGL +++ +ALL+HK I++ S+ ++L+ + L VV C +F+ M PLG+GLG L +S + +L+G+A GTFLY+TF E+LP EL ++++LK++ ++ G+ ++TG+ + +
Sbjct: 153 NGGPQHW----HDGPGVPQASGAPATPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLRAQVVAGCGILFSCMTPLGIGLGAALAESAGP-LHQLAQSVLEGMAAGTFLYITFLEILPQELASSEQRILKVILLLAGFALLTGLLFIQ 323
The following BLAST results are available for this feature:
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