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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067873 ID=TCONS_00067873|Name=TCONS_00067873|organism=Clytia hemisphaerica|type=transcript|length=660bp
CGACAATTAATTGTAGGGTGGCTTATACCAAGGTAGCATATTATTCTCTT
TAGAAAGCAGAATTATCAGGTCGTGGAAACCAACGCTATCTGCCGTAAAT
AGGGCGTAAATATCGAGCTCTATAAATTTTCTCTAccagtaaaataaaaa
tcagATAAATAGAAAACGCAAGGAAAAGGTTTAACAACCTATTgcaaaca
tgtcaaagaagagCCGCTACTTATACACGCCCCTCATACCGCCCACGAAC
AACAACAATGGCCAACAGCAATCCTTTCATCAAGAAAGTGAATCTGAGAA
TGAAGAAAAGTCAAACACGACGTTTTTTTCGCTTTTCTCCAATTTAAGTC
AAATTTCATTCCCTGCGGCCGGCATTCCAATACAAGAACTTAGCGAAATA
GCACCAGGACCTCCAGACTTTGACCTACATGAAGTTTATTTCCCaaaaga
aatttgcaaaaagCAGGTACGCAGGAAGCAGAAAGGAGCATGTGCAGTCA
ATTCAACACAAAGACCGAACAGCGACGATATCAAATTCGATCTcatcttc
aaaacaaaagattgcAACAACATAGTAGCTGATATTGATGTCAATGTATT
CAAAGTCCATAACAAAGCTCAGTCTCGCGTCAAGTCATCATGGAGATGGG
TTAATAACAC Run BLAST on NCBI protein sequence of TCONS_00067873-protein >TCONS_00067873-protein ID=TCONS_00067873-protein|Name=TCONS_00067873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MSKKSRYLYTPLIPPTNNNNGQQQSFHQESESENEEKSNTTFFSLFSNLS
QISFPAAGIPIQELSEIAPGPPDFDLHEVYFPKEICKKQVRRKQKGACAV
NSTQRPNSDDIKFDLIFKTKDCNNIVADIDVNVFKVHNKAQSRVKSSWRW
VNN Run BLAST on NCBI transcript from alignment at scaffold_477:91471..92894+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067873 ID=TCONS_00067873|Name=TCONS_00067873|organism=Clytia hemisphaerica|type=transcript|length=1424bp|location=Sequence derived from alignment at scaffold_477:91471..92894+ (Clytia hemisphaerica)
CGACAATTAATTGTAGGGTGGCTTATACCAAGGTAGCATATTATTCTCTT
TAGAAAGCAGAATTATCAGGTCGTGGAAACCAACGCTATCTGCCGTAAAT
AGGGCGTAAATATCGAGCTCTATAAATTTTCTCTAccagtaaaataaaaa
tcagATAAATAGAAAACGCAAGGAAAAGGTTTAACAACCTATTgcaaaca
tgtcaaagaagagCCGCTACTTATACACGCCCCTCATACCGCCCACGAAC
AACAACAATGGCCAACAGCAATCCTTTCATCAAGAAAGTGAATCTGAGAA
TGAAGAAAAGTCAAACACGACGTTTTTTTCGCTTTTCTCCAATTTAAGTC
AAATTTGTAAGTTATTTTCATTATAGTTGACTTTCTCTTAGGCTttctct
cttattcgatctaAATAGAATTTTTCGAACTAGAGAAATATTTGAATTGC
AGAAacatttgaattagagagagtttatGGGAAGCCATTTTTGATAGCTA
CACTTCAGTAGCTTTTTCTAcctattttttgtaaaatcctTAACTCTCAA
TTATTTTAGCATTCCCTGCGGCCGGCATTCCAATACAAGAACTTAGCGAA
ATAGCACCAGGACCTCCAGACTTTGACCTACATGAAGTTTATTTCCCaaa
agaaatttgcaaaaagCAGGTATGACATTGTGCATCAAACTctactattt
ttattttttatgaaaactttATAATAAAGTGGCGCCTTCACACAAGAAGA
CATTGCTTGCTTCAACGTGTTAGAAAGtcacttttgggctaattgataaa
tttattttattcaagtatttcaattcgggaggggtttatagacttccagg
ctatattctgagccctaatgtgctatttttgaatttttggatcCTCAAAT
CCTAAGCTCCagagtcttaagtctagcgtttaAACTCAGAGTTAAGACTC
TACCCTCCCAACCTATTTTAGAGCgctccttttttcgcacctataaacaa
tagaaaaatgtgtcaaaaaaggattggatcgagtttagggggataattaa
ataattaagtgcctgaccgcgcgactacggtcaaaaaggtgtattataag
ATTCTTTATGTAATTTATACAGGTACGCAGGAAGCAGAAAGGAGCATGTG
CAGTCAATTCAACACAAANCCTGACCGCGtgactacggtcaaaaaggtgt
attataagATTCTTTATGTAATTTATACAGGTACGCAGGAAGCAGAAAGG
AGCATGTGCAGTCAATTCAACACAAAGACCGAACAGCGACGATATCAAAT
TCGATCTcatcttcaaaacaaaagattgcAACAACATAGTAGCTGATATT
GATGTCAATGTATTCAAAGTCCATAACAAAGCTCAGTCTCGCGTCAAGTC
ATCATGGAGATGGGTTAATAACAC Coding sequence (CDS) from alignment at scaffold_477:91471..92894+ >TCONS_00067873 ID=TCONS_00067873|Name=TCONS_00067873|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_477:91471..92894+ (Clytia hemisphaerica)
atgtcaaagaagagCCGCTACTTATACACGCCCCTCATACCGCCCACGAA
CAACAACAATGGCCAACAGCAATCCTTTCATCAAGAAAGTGAATCTGAGA
ATGAAGAAAAGTCAAACACGACGTTTTTTTCGCTTTTCTCCAATTTAAGT
CAAATTTCATTCCCTGCGGCCGGCATTCCAATACAAGAACTTAGCGAAAT
AGCACCAGGACCTCCAGACTTTGACCTACATGAAGTTTATTTCCCaaaag
aaatttgcaaaaagCAGGTACGCAGGAAGCAGAAAGGAGCATGTGCAGTC
AATTCAACACAAAGACCGAACAGCGACGATATCAAATTCGATCTcatctt
caaaacaaaagattgcAACAACATAGTAGCTGATATTGATGTCAATGTAT
TCAAAGTCCATAACAAAGCTCAGTCTCGCGTCAAGTCATCATGGAGATGG
GTTAATAACatgtcaaagaagagCCGCTACTTATACACGCCCCTCATACC
GCCCACGAACAACAACAATGGCCAACAGCAATCCTTTCATCAAGAAAGTG
AATCTGAGAATGAAGAAAAGTCAAACACGACGTTTTTTTCGCTTTTCTCC
AATTTAAGTCAAATTTCATTCCCTGCGGCCGGCATTCCAATACAAGAACT
TAGCGAAATAGCACCAGGACCTCCAGACTTTGACCTACATGAAGTTTATT
TCCCaaaagaaatttgcaaaaagCAGGTACGCAGGAAGCAGAAAGGAGCA
TGTGCAGTCAATTCAACACAAAGACCGAACAGCGACGATATCAAATTCGA
TCTcatcttcaaaacaaaagattgcAACAACATAGTAGCTGATATTGATG
TCAATGTATTCAAAGTCCATAACAAAGCTCAGTCTCGCGTCAAGTCATCA
TGGAGATGGGTTAATAACatgtcaaagaagagCCGCTACTTATACACGCC
CCTCATACCGCCCACGAACAACAACAATGGCCAACAGCAATCCTTTCATC
AAGAAAGTGAATCTGAGAATGAAGAAAAGTCAAACACGACGTTTTTTTCG
CTTTTCTCCAATTTAAGTCAAATTTCATTCCCTGCGGCCGGCATTCCAAT
ACAAGAACTTAGCGAAATAGCACCAGGACCTCCAGACTTTGACCTACATG
AAGTTTATTTCCCaaaagaaatttgcaaaaagCAGGTACGCAGGAAGCAG
AAAGGAGCATGTGCAGTCAATTCAACACAAAGACCGAACAGCGACGATAT
CAAATTCGATCTcatcttcaaaacaaaagattgcAACAACATAGTAGCTG
ATATTGATGTCAATGTATTCAAAGTCCATAACAAAGCTCAGTCTCGCGTC
AAGTCATCATGGAGATGGGTTAATAACatgtcaaagaagagCCGCTACTT
ATACACGCCCCTCATACCGCCCACGAACAACAACAATGGCCAACAGCAAT
CCTTTCATCAAGAAAGTGAATCTGAGAATGAAGAAAAGTCAAACACGACG
TTTTTTTCGCTTTTCTCCAATTTAAGTCAAATTTCATTCCCTGCGGCCGG
CATTCCAATACAAGAACTTAGCGAAATAGCACCAGGACCTCCAGACTTTG
ACCTACATGAAGTTTATTTCCCaaaagaaatttgcaaaaagCAGGTACGC
AGGAAGCAGAAAGGAGCATGTGCAGTCAATTCAACACAAAGACCGAACAG
CGACGATATCAAATTCGATCTcatcttcaaaacaaaagattgcAACAACA
TAGTAGCTGATATTGATGTCAATGTATTCAAAGTCCATAACAAAGCTCAG
TCTCGCGTCAAGTCATCATGGAGATGGGTTAATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067873-exon-scaffold_477-1491911889:91471..91826 | TCONS_00067873-exon-scaffold_477-1491911889:91471..91826 | Clytia hemisphaerica | exon |
| TCONS_00067873-exon-scaffold_477-1510915933:91471..91826 | TCONS_00067873-exon-scaffold_477-1510915933:91471..91826 | Clytia hemisphaerica | exon |
| TCONS_00067873-exon-scaffold_477-1575043694:91471..91826 | TCONS_00067873-exon-scaffold_477-1575043694:91471..91826 | Clytia hemisphaerica | exon |
| TCONS_00067873-exon-scaffold_477-1491911889:92030..92139 | TCONS_00067873-exon-scaffold_477-1491911889:92030..92139 | Clytia hemisphaerica | exon |
| TCONS_00067873-exon-scaffold_477-1510915933:92030..92139 | TCONS_00067873-exon-scaffold_477-1510915933:92030..92139 | Clytia hemisphaerica | exon |
| TCONS_00067873-exon-scaffold_477-1575043694:92030..92139 | TCONS_00067873-exon-scaffold_477-1575043694:92030..92139 | Clytia hemisphaerica | exon |
| TCONS_00067873-exon-scaffold_477-1491911889:92593..92617 | TCONS_00067873-exon-scaffold_477-1491911889:92593..92617 | Clytia hemisphaerica | exon |
| TCONS_00067873-exon-scaffold_477-1510915933:92593..92617 | TCONS_00067873-exon-scaffold_477-1510915933:92593..92617 | Clytia hemisphaerica | exon |
| TCONS_00067873-exon-scaffold_477-1575043694:92593..92617 | TCONS_00067873-exon-scaffold_477-1575043694:92593..92617 | Clytia hemisphaerica | exon |
| TCONS_00067873-exon-scaffold_477-1491911889:92726..92894 | TCONS_00067873-exon-scaffold_477-1491911889:92726..92894 | Clytia hemisphaerica | exon |
| TCONS_00067873-exon-scaffold_477-1510915933:92726..92894 | TCONS_00067873-exon-scaffold_477-1510915933:92726..92894 | Clytia hemisphaerica | exon |
| TCONS_00067873-exon-scaffold_477-1575043694:92726..92894 | TCONS_00067873-exon-scaffold_477-1575043694:92726..92894 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:91471..92894 + |
Blast
The following BLAST results are available for this feature:
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