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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067846 ID=TCONS_00067846|Name=TCONS_00067846|organism=Clytia hemisphaerica|type=transcript|length=1791bp
CTAAACCGTACACGTGATGATTACATCGATGAGCCTGAAGGAGAAGACAT
CGACCCAAATAAAATCATAGCAAATGATATTGAAACACCACCGTGTCCTT
CCCAGGAGTCGCAACCCATCGAACAATTCACCACCACTGACGAGTCACAG
AACATCCAAAAACTTACTGACGAATCACAGAACATCCAACAATTCTCCTC
AATTCCCCCACAGACAACCATCCAAAGAAACCGAATCTCAGGTAATCGAG
CAGTCAACACCTAAAACTAGCCCGAAAAACTCTGAACGTTACACATCCTT
CTTGAGGCCTCACTTCAACCTGCGACTGTCCAGACGTTTTTTTCTTCAAC
CAATACAACGACGTCGAACAAGGATAGGCCACACCTCTTTAAAAGTACCC
GAAATATATATCAACAGAAAAGGTCACAAATAATTGAACGGTTAAGAATT
GTCCCCGAATGTACCCACAGAAGGTaccttttctttccaaagagcACTGG
CATTTACACATGCAAGAGATAGAGGCGCAGAAgctgaaataaagaaaaca
cTTGCTGAAAAAACCCTAACAGAGAATGTTTGATGATCAAATGTACTCTA
CAACAATAGGGAAAGCATTGAGCACAGTCATCTAACTGCTGATAGTGAGT
GAACATTGACTGAGAGTGAAAGTACATTGACAGTACTTGTCAACACATGA
TGAAGGAAAAATGAGTGGGTTTTTACAGAAATGGCGATGAACGTGTCAAG
GAAATTTATTCAGACAGACAGAGGGAATCAGAATCAAGTGATGAAGAAAA
ATCTGCACCATCCTTGATGGTGGACAAATAAGTGACTGATAATGAATATG
ACGAAGATATTGATACAGACACAGATATTGAAACAGAATCAGAAAGTTCA
AGTGATGAAGAAGAATCTGATAAAGATCAAATTGAATATATTGGACAACA
TTTCAGAGGAGCCGTGCTTTCAATATGTGAGGACCTGGAATATTAGTTGA
AAATTCTTCTTGCACTTATGTGATTTATTTTGATGGAAAATCAGCATTCA
AAAGATGTCCAACTTGCTGTTAACTGGATGCTGGACATATGCTGCCATAC
GTTGAAGTTCTTGAacgaaatttgaaatgataacaaCGTGATAATACTTT
GAGAAGACTGCCATCGGAGAAAGAGTATCGTGCTATTTCGATTGATTGAC
GGAAAACAAATTATGGTAAACGATCGAAAGAGACAATCTAACTTGTAATG
GTTAtagattacatgtttttttttatttaagcatacaaaaatccgaaaac
aggctcagagatgcttaggtcgaaagcttaataaggctgaaaaatgcttg
aggggatgcttaaatctaaagcattaatttagggaaatactgaaaatccg
tgaaattccagccaaaaaaatcaggaaaaaaatattttttgtaggcTCAA
GCAATGCTTCCCATATGCTtgatttttccccatatctgagcctagatatg
cttataagtgcaatgcttataaaaaaacatgtattctgcTTTCACTGAAA
CTTTAACTTGGgtattaaagggacattaaagtagtaaaatgtaaacattg
cgcgaaccaagtgtcattaaaaagaacaattaaaatcacgtgtccaaaac
aaacttgtaaaacaattgaacgaTCAAAATTatccatatttggtttgatt
ttttattttgacatgtgacatttgttttgattttgtatccgctgcataca
gtttgtttacaaatttcgcaagtactgttatgtccctttaa Run BLAST on NCBI transcript from alignment at scaffold_476:216656..218446 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067846 ID=TCONS_00067846|Name=TCONS_00067846|organism=Clytia hemisphaerica|type=transcript|length=1791bp|location=Sequence derived from alignment at scaffold_476:216656..218446 (Clytia hemisphaerica)
ttaaagggacataacagtacttgcgaaatttgtaaacaaactgtatgcag
cggatacaaaatcaaaacaaatgtcacatgtcaaaataaaaaatcaaacc
aaatatggatAATTTTGAtcgttcaattgttttacaagtttgttttggac
acgtgattttaattgttctttttaatgacacttggttcgcgcaatgttta
cattttactactttaatgtccctttaatacCCAAGTTAAAGTTTCAGTGA
AAgcagaatacatgtttttttataagcattgcacttataagcatatctag
gctcagatatggggaaaaatcaAGCATATGGGAAGCATTGCTTGAgccta
caaaaaatatttttttcctgatttttttggctggaatttcacggattttc
agtatttccctaaattaatgctttagatttaagcatcccctcaagcattt
ttcagccttattaagctttcgacctaagcatctctgagcctgttttcgga
tttttgtatgcttaaataaaaaaaaacatgtaatctaTAACCATTACAAG
TTAGATTGTCTCTTTCGATCGTTTACCATAATTTGTTTTCCGTCAATCAA
TCGAAATAGCACGATACTCTTTCTCCGATGGCAGTCTTCTCAAAGTATTA
TCACGttgttatcatttcaaatttcgtTCAAGAACTTCAACGTATGGCAG
CATATGTCCAGCATCCAGTTAACAGCAAGTTGGACATCTTTTGAATGCTG
ATTTTCCATCAAAATAAATCACATAAGTGCAAGAAGAATTTTCAACTAAT
ATTCCAGGTCCTCACATATTGAAAGCACGGCTCCTCTGAAATGTTGTCCA
ATATATTCAATTTGATCTTTATCAGATTCTTCTTCATCACTTGAACTTTC
TGATTCTGTTTCAATATCTGTGTCTGTATCAATATCTTCGTCATATTCAT
TATCAGTCACTTATTTGTCCACCATCAAGGATGGTGCAGATTTTTCTTCA
TCACTTGATTCTGATTCCCTCTGTCTGTCTGAATAAATTTCCTTGACACG
TTCATCGCCATTTCTGTAAAAACCCACTCATTTTTCCTTCATCATGTGTT
GACAAGTACTGTCAATGTACTTTCACTCTCAGTCAATGTTCACTCACTAT
CAGCAGTTAGATGACTGTGCTCAATGCTTTCCCTATTGTTGTAGAGTACA
TTTGATCATCAAACATTCTCTGTTAGGGTTTTTTCAGCAAgtgttttctt
tatttcagcTTCTGCGCCTCTATCTCTTGCATGTGTAAATGCCAGTgctc
tttggaaagaaaaggtACCTTCTGTGGGTACATTCGGGGACAATTCTTAA
CCGTTCAATTATTTGTGACCTTTTCTGTTGATATATATTTCGGGTACTTT
TAAAGAGGTGTGGCCTATCCTTGTTCGACGTCGTTGTATTGGTTGAAGAA
AAAAACGTCTGGACAGTCGCAGGTTGAAGTGAGGCCTCAAGAAGGATGTG
TAACGTTCAGAGTTTTTCGGGCTAGTTTTAGGTGTTGACTGCTCGATTAC
CTGAGATTCGGTTTCTTTGGATGGTTGTCTGTGGGGGAATTGAGGAGAAT
TGTTGGATGTTCTGTGATTCGTCAGTAAGTTTTTGGATGTTCTGTGACTC
GTCAGTGGTGGTGAATTGTTCGATGGGTTGCGACTCCTGGGAAGGACACG
GTGGTGTTTCAATATCATTTGCTATGATTTTATTTGGGTCGATGTCTTCT
CCTTCAGGCTCATCGATGTAATCATCACGTGTACGGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067846-exon-scaffold_476-1491911889:216656..218446 | TCONS_00067846-exon-scaffold_476-1491911889:216656..218446 | Clytia hemisphaerica | exon |
| TCONS_00067846-exon-scaffold_476-1510915933:216656..218446 | TCONS_00067846-exon-scaffold_476-1510915933:216656..218446 | Clytia hemisphaerica | exon |
| TCONS_00067846-exon-scaffold_476-1575043694:216656..218446 | TCONS_00067846-exon-scaffold_476-1575043694:216656..218446 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:216656..218446 . |
Blast
The following BLAST results are available for this feature:
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