TCONS_00067828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067828
Unique NameTCONS_00067828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067828 ID=TCONS_00067828|Name=TCONS_00067828|organism=Clytia hemisphaerica|type=transcript|length=612bp
gtttctTTCAGTTGCTTATATAAATTTTCATGTCaaggaaaaaataatgt
atTAAACGAAATAATGTCAGAGATAGACGAAGACACACCGCAAGAGGTAA
CTCCTGATGATGCTCCTGCTGCTATTGATCCACCAATCAATGAAGAGCAG
CAACCTGATGAAGGTGTGGATCAGAAGGATGAATCTGCACCACATGATGA
gtcaaatgagaaACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAAC
AGCAAGAAGATGGTCAACAGCAAGAAGaacaacaacaggtTGAATTGAAA
GAAGCTGTGTCTGAGGGAAATGTTGAACAACAAGGAGGAGATCCATCGat
AACTGAGCCACTTGTTGAGAAGAGAGAAGAGGAGCAACAAGAAAGTCAGG
GAGAAACTTCTCATGATATTGAAATTCTCGAAACGCCAACGACACCGCCC
CCACCACCCAAACATTTAGAGAATGATATCATTCTTGAAGTTGACGAAGA
AGAACAAAGTCATAGCTTAGATAGTGGTGATAATTTGGATGAAGAATTGG
AGGATGAAGAGACTGGCAGTCTAGTCTTTGATCGTGAACAGTTGCTACAA
CAATACAAGGTT
Run BLAST on NCBI

transcript from alignment at scaffold_476:115706..117595-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067828 ID=TCONS_00067828|Name=TCONS_00067828|organism=Clytia hemisphaerica|type=transcript|length=1890bp|location=Sequence derived from alignment at scaffold_476:115706..117595- (Clytia hemisphaerica)
GTTTCTTTCAGTTGCTTATATAAATTTTCATGTCAAGGAAAAAATAATGT
ATTAAACGAAATAATGTCAGAGATAGACGAAGACACACCGCAAGAGGTAA
CTCCTGATGATGCTCCTGCTGCTATTGATCCACCAATCAATGAAGAGCAG
CAACCTGATGAAGGTGTGGATCAGAAGGATGAATCTGCACCACATGATGA
GTCAAATGGTAAAAAAGATTTTTCATATGTTTTAATATTTTCTGCACCAA
CACATATAAGAACATCTTTAAAATTTTTGAAGCTTCAATGTTCTTAACTT
CTTGAGTTTTAGGCCTAAAAAATGTGTTCTTAACATATTCTTATTTCACT
GTTTTTTGAGTATTATTTTGATCCGATTTTCTATGAAATTGGGTGTTTTA
GAATCCACAAAGCCTTAAAATGTTTTTATCTTGTTTTTATTAAATTTTGG
CCAACAAAATTTTAGAATTATCTGAAGGCTTTAAAGATTTTGGATGTTCT
TTCTTTTATAAGAGAAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGT
CAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAGA
TGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAG
AAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAG
CAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAACAACAACAACA
GGTTGAATTGAAAGAAGCTGTGTCTGAGGGAAATGTTGAACAACAAGGAG
GAGATCCATCGGTTTGTAATAATTTGATACATGTTTTTTTATATAAGAAA
AAACCAATTAAGAACATTGAGGCTTTGATGACCAAGAACATCTTAAGACT
TTATGGACCCAGATCCCATTTTTTTAGGGAATCGCTCAAATAAAAACATT
GTAGTACTGTATTATTAAGAATTAAATCAAATAAAAGAATTAGCTGCTTA
ATTTGACCTGAACGGAATCGTTTTTTCAAGTTTTCACCATTGTTTTCTGT
TTTCTTTGTTTAGATAACTGAGCCACTTGTTGAGAAGAGAGAAGAGGAGC
AACAAGAAAGTCAGGGAGAAACTTCTCATGATATTGAAATTCTCGAAACG
CCAACGACACCGCCCCCACCACCCAAACATTTAGAGAATGATATCATTCT
TGAAGTTGACGAAGGTATTGTAATTATAATACTGAAGAAATATTAATTTA
ATCTGAGTAATTATTATTATCATCTATGTTTGCTATTTATTTGCAAACAA
TTTATAAAACACAGCTTAAAGCTGCCCGAGTAATCTCCGAGCAGATTCTG
ATACTCCGTGCATGACACATATTCACTTTTAAGTCCATGGTTCCGCGAGA
GAATCTGTCCAGGTTAGCGCACCGTTGTGTTTTTTTATTCCAGATTTGGG
AAGAATATTAAATGAGCTTTTGAGGGCGCTGATTGGTTAAGGCAAAACAA
TAGCACCAAAATCAAAAGCCAATCACAAACATAAAGATTTGAACCCTTTC
ACTTTTACATTCGTTTTCAAACAAAAAGCAGCGCTCTTTTAAATGTTTTT
GCTGAACAACAAGGTCAAATCATCACATTCGCCATATCCCTTTAGAGCAT
AGCGTGGTATGTGCAGAATGGATGATCTGTTATGAGACTAGAGCCCAAGA
GAAAACACTGTTTGTTCCACTTTTTGAACATTTGATTGACATTTAACTGA
TCCTACAATCTTTCGTTTCCTTTTCAGAAGAACAAAGTCATAGCTTAGAT
AGTGGTGATAATTTGGATGAAGAATTGGAGGATGAAGAGACTGGCAGTCT
AGTCTTTGATCGTGAACAGTTGCTACAACAATACAAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042359XLOC_042359Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067828-exon-scaffold_476-1575043694:117388..117595TCONS_00067828-exon-scaffold_476-1575043694:117388..117595Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1575043694:117015..117083TCONS_00067828-exon-scaffold_476-1575043694:117015..117083Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1575043694:116785..116855TCONS_00067828-exon-scaffold_476-1575043694:116785..116855Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1575043694:116382..116532TCONS_00067828-exon-scaffold_476-1575043694:116382..116532Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1575043694:115706..115818TCONS_00067828-exon-scaffold_476-1575043694:115706..115818Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1510915933:117388..117595TCONS_00067828-exon-scaffold_476-1510915933:117388..117595Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1510915933:117015..117083TCONS_00067828-exon-scaffold_476-1510915933:117015..117083Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1510915933:116785..116855TCONS_00067828-exon-scaffold_476-1510915933:116785..116855Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1510915933:116382..116532TCONS_00067828-exon-scaffold_476-1510915933:116382..116532Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1510915933:115706..115818TCONS_00067828-exon-scaffold_476-1510915933:115706..115818Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1491911889:117388..117595TCONS_00067828-exon-scaffold_476-1491911889:117388..117595Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1491911889:117015..117083TCONS_00067828-exon-scaffold_476-1491911889:117015..117083Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1491911889:116785..116855TCONS_00067828-exon-scaffold_476-1491911889:116785..116855Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1491911889:116382..116532TCONS_00067828-exon-scaffold_476-1491911889:116382..116532Clytia hemisphaericaexon
TCONS_00067828-exon-scaffold_476-1491911889:115706..115818TCONS_00067828-exon-scaffold_476-1491911889:115706..115818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:115706..117595 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.59418	0	1.32394e-08	0.000237353	0	4.67813	1.48065e-05	9.2445	10.9603	3.44582e-08	1.3462	3.28471	1.60156	0	3.42118	6.05324	2.77429	0	0.646748	1.54	0.000118923	7.35884	0.0122235	2.41488	2.36555	8.94983	5.61458	5.07989	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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