TCONS_00067819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067819
Unique NameTCONS_00067819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067819 ID=TCONS_00067819|Name=TCONS_00067819|organism=Clytia hemisphaerica|type=transcript|length=2526bp
GGTATGGAACGTGCAGTCATTCTAAATtcatatgacgtcatcaaagagGC
TTTAATGACCAGAGGTACTGACTTTGCGGGTAGACCCACAACTGACATAC
CAAACAAAATAATCAGTAGAAATTTCACAAATATCGCTCACCGGGATTAT
TCAAAAACATGGGCGTTTTTGAGAAAAGTTGCGTATAAAAGTTTACATGT
CTATGGATCAGGAATGAAGAGGCTTGAAGATTTGATCACAGAAGAAGTGG
ACAAAATGTGTTCGGTGTTGTCACGTGATGTTGGGAAACCAGTCTTGATC
GACTATTATATCGAAAATTCTTTGATCAACACGATGTGTCATATGTGCTA
CAGCAAAACGTATGATTTTGATGATCCAGAGTTCGTGCATATAATGGGCT
ACATCAAAATGTCCAATGAAGGTCTAACACCTAACCAAGCCATATCAATT
TTTCCTTGGCTGCAATATTTCCCTGACACCGAAGCACTCAAGAAATTGAA
ACTTGCTGTAAAACAAGACACAGAATTCACACGTAAAATGTTCGATGAAC
ATATCGCAACTTTTGATCCTGAGAATATCAGAGATTTTACTGATAATCTA
CTTCATTTTTCACAAAACAAGGAATTATGGAAAGATGCTGGTTTTGAGAC
AATCACTCGAGAAGAAATTGAACCTGTGGTAAGTTCACTATTGTTTGCAG
GTGTGGAAACCCAAGCTGCTCTTTTACGTTGGCTCTTCCTCTACATGATG
CATTTCCCAGAATATCAAACAAGAATCTATGAGGAAGTTAGATCGAATGT
TGGACTGAAGCGTCGAATATCTCCCGAGGATAAAGATGTATGTCCAACAA
CTAATGCAATATTACTTGAAACTCATCGCATGGCATCTGTAGGCGCTCTT
AGTCTCCCTCACAAAACGACCGTTGATACTTCAGCCGGGGGCTTTGCTAT
TCCGAAGGATACAATGGTCTTTGTCAACCTCTACAGCATACATTATGATC
CTACACACTGGGATGAACCAGAGAAATTCAAACCAGAACGTTGGTTGAAT
GTTGATGGAAGTTTGAAGAAAGAGAAGCCAACACACTATCTTCCTTTCTC
AGCTGGAACGCGGGTATGTATTGCAGAAAGAATGGCCAAAATGCAACTAT
TCATCATCACTACTAACTTCTTTCGTAATTTTGAAGTTTCAAACGCTCCA
GGAGAAGAATTACCAGGTCTAAAAGACGGCATCTATTGGTCAACCTTGAA
TCCACCTCGTCGTAAAATTGTTGTGACGAAACGAAAACATAACTGAAAAA
GGAGGAATTGGATGAACGTATAGACAATGTTACCGTTAGTTGATGAAATC
TTTACGTGATTATTTTTTTAGTTACTTAGTTATAATTAGTTCTTTTGTTG
TTGGTTTTTATCTTTCACGAATATAGAATTCATTCTTTTGATACTTCAAA
TTGTGGTTTCGAGTCATCCTCGCTCTAGAATGGTAGAATTgatgcttgtt
ttttttcttgtttttttttctattatattttttttattactcactttttc
tttttttttaaatattactttattatattttctatttttttatattttaa
attttttttgggttttcgatttttatttttatttacctTATTGTATGGTA
GGGAAGAAAATTGCTGGTGACCCTGTTTTCTTCTTGGTGCATAAGTCAGT
CCAGCAAAGGGTCGAAACTAAGCTACTTATGTACCCTGACAATATTGTCA
TCGGATTCGTTATttaactctacccttcgaacctaccttagagcacttac
aaatcgattgttcctggggaatttcccttttttctcaattattaTGACCT
TTGATTGTAGGCTTAATGTGCTTAAATAGTGGTAGTATTCGAGTATTTGT
TTTGAGAACTATTTCCATCAATGATCTTTACCATTgattttatcgttttt
tttttttttggtttcgctagttttgggttcagttgttaaactttttttgt
tgGAAAGATCCATCTTTTGGTCTTCATCAACAATCCTGTATTATCAGGTA
TTATTTTCTTCATATTTATTGGGACAATCCCAATTGTTAAAGCTGTAAAG
CTAACGCTTGTTAGTATGAGTTGAATGAAACGATTAATCTATAGTTATTT
AGTGAAGATGCGTCAAAAAAACCTATGGCTCCGTTTAACTAAAGTGTCGT
TCGTTATTTAACCCTAACTGACTCCTTTTTCGACTCGATCGGCATTTACT
CCCGAGGTGTCTTTTTTAGACATTTACAAGCTTTTGAGTTTAGCACAAAT
GTCTTCTTTTCAAGCTTAAGTTGTATGGGCATTCTGGCTCTCTCCATCTT
TTGATCCAAAACTTTCTATTTGAAAGGTTACAAAGTAGTTCTTGATGGTC
AACCCTCTCAATGGACCCCGATTTCAGCAGGGTTCTACTCTGGGACCCCT
CTTATATATTAACGATCTCCCAAAAGATATAATTTCCTTGATCAAGATAT
TCGCTGATAACTCTTCTGAATTTTCC
Run BLAST on NCBI

protein sequence of Cytochrome p450 family member

>TCONS_00067819-protein ID=TCONS_00067819-protein|Name=Cytochrome p450 family member|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
GMERAVILNSYDVIKEALMTRGTDFAGRPTTDIPNKIISRNFTNIAHRDY
SKTWAFLRKVAYKSLHVYGSGMKRLEDLITEEVDKMCSVLSRDVGKPVLI
DYYIENSLINTMCHMCYSKTYDFDDPEFVHIMGYIKMSNEGLTPNQAISI
FPWLQYFPDTEALKKLKLAVKQDTEFTRKMFDEHIATFDPENIRDFTDNL
LHFSQNKELWKDAGFETITREEIEPVVSSLLFAGVETQAALLRWLFLYMM
HFPEYQTRIYEEVRSNVGLKRRISPEDKDVCPTTNAILLETHRMASVGAL
SLPHKTTVDTSAGGFAIPKDTMVFVNLYSIHYDPTHWDEPEKFKPERWLN
VDGSLKKEKPTHYLPFSAGTRVCIAERMAKMQLFIITTNFFRNFEVSNAP
GEELPGLKDGIYWSTLNPPRRKIVVTKRKHN
Run BLAST on NCBI

transcript from alignment at scaffold_476:1845..6254-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067819 ID=TCONS_00067819|Name=TCONS_00067819|organism=Clytia hemisphaerica|type=transcript|length=4410bp|location=Sequence derived from alignment at scaffold_476:1845..6254- (Clytia hemisphaerica)
GGTATGGAACGTGCAGTCATTCTAAATTCATATGACGTCATCAAAGAGGC TTTAATGACCAGAGGTACTGACTTTGCGGGTAGACCCACAACTGACATAC CAAACAAAATAATCAGTAGAAATTTCACAAATATCGCTCACCGGGATTAT TCAAAAACATGGGCGTTTTTGAGAAAAGTTGCGTATAAAAGTTTACATGT CTATGGATCAGGAATGAAGAGGCTTGAAGATTTGATCACAGAAGAAGTGG ACAAAATGTGTTCGGTGTTGTCACGTGATGTTGGGAAACCAGTCTTGATC GACTATTATATCGGTAAGTATATATAATTTTTGTATTTCATATTTTTTCT TTTATAACAACAATTTTATAGGAACAATGAGGCTCAAAATTGTCAAAAAA TGAGAATAATTTAATAACAATCCTAAACCTGGAATTGCTCCATTTCAAGT AATCTAGGGATCATAGTAGTGAAAAATGGATTTAAATCCTAAAATACTTT AATTTCACCCTAGATAAGAAGGAATCACGAAAATTTTTACCTAGATTTTA GTATCGACCCCCCCTCTCTGTTTGAAGTGGTCATTTAATATATAATCTCT CTTTCAATGATATTGGAAATACGTTTCGTGATTTTCTCTTCATAGTATAC AACACTAATTGGATTTAATACGGACGTCCATTATTGAATAGCGCACCGCT GTTTTATTTTTGACATAATCATTACTCTCGATGGTTGTGTTCAGACCAAG GTTTAAAGTAATTAAGTCTACATGTTTCTTTTATATTCCTTTTGTATTTA GCAGCACGCTCCTCATAAGTTAAACCAAAGTTTAAAAAGGAATCACCCTC TGGTTTAAAAAAAACGTTTTTACGATATTATCACAGTTTTCTGAATAGAC GAAATCAGTATTCGCAAGTGAAAAGCATGCTCCTTTTGTAAATTATGAAA AGAGAACGTGAAATTTATGACTTAGCGACGCTCGGAGCGTCTCTAGCAAT TTAGGCAGTTAACGGGCTTTTAATGAGAATATCATGGATATATATGGAGA TTCCCATACTCCGCAACAAAAAAAATCCATTTTTGATGAATAGTGATAGA GAGAGAAGAAAGTTGTTTTGACATTCAAAAGGGGATTCCTCTCTTATGTA ATCTATCTAAAAGATGAAATAACAATTAAGTCGTTGCATTTCTTAATTCC CATATCAACTAAGTACTACTTAAACCTTAAACTTAAACTTTCATGTCTGA ACACGACCGATGTGTTTGTACGAGTTCCAATCCCATCAACCTTTGCGTTA ATCTCTTTTGCATGTTAATTGCATCGTTTGACAAAAGATATATAACAGTT TGCACGTATCTTTAATTGAGCCGCGTTGAATTGTGGGATTGCAACTCGTA CAAATGTCAAAAGAGTGAAAAGTAATAATTATGACGTATGCATTGCGGAG CGCTATTTCACAAAAATAAACGTGTTTTGTGGTTCTCAAATTTTTGTTGA CGTCAGCAATTACGTCTTTTTAAAACAACCTTCCGTAATAACTTTTATTG GCTTCATTTTCATATACAGGTTGTAATGTTCTTCTGAACGGGCATGAAAA ATGCTTTCCAAATGTATGTAAATGTTCTGGTCTGTGAAATACACAAACCA ATTTTTTGGGTCTGAGATTTAAATCCATTTTAGACCCCTAATATACAATT GTGCAAAGTTTCATACTTTTACATAGGCTACGTCGTATCTTCCTTCGTTT AGAGCGTAAAACTCTTACTCTTCGGGATATGCGCANGTATCTTCCTTCGT TTAGAGCGTAAAACTCTTACTCTTCGGGATATGCACACTGCTTTTGTTTT GAATATTGAACTTCTCCGGATACATCGCATGCGCACTGAGGTTTTAAATG AAACAATAGAGTTTCAAAACCGAAGCCAACCAGCTGTGTTTTAAACATTT TTTTATTTTAAATCTCTAAACTAACTTAAAGAAACTGATTTTCCGAGAAT CTATTTTTGGCGAATTTGGCGAATTTCGACAATAATTTGAAAAATTAGTT TTCGCCAAATGTTCGTCAAAACTTCAAACTGTCTAGGGCTTTCATATTTG GGCCAGGAGGAAAGATTTATCCTGCAAATCGCCAAAATTAGTTATCATTA AAATAAATTTCTTTAAAGTAATACTCATATTTTTTTTATCTTTACAGAAA ATTCTTTGATCAACACGATGTGTCATATGTGCTACAGCAAAACGTATGAT TTTGATGATCCAGAGTTCGTGCATATAATGGGCTACATCAAAATGTCCAA TGAAGGTCTAACACCTAACCAAGCCATATCAATTTTTCCTTGGCTGCAAT ATTTCCCTGACACCGAAGCACTCAAGAAATTGAAACTTGCTGTAAAACAA GACACAGAATTCACACGTAAAATGTTCGATGAACATATCGCAACTTTTGA TCCTGAGAATATCAGAGATTTTACTGATAATCTACTTCATTTTTCACAAA ACAAGGAATTATGGAAAGATGCTGGTTTTGAGACAATCACTCGAGAAGAA ATTGAACCTGTGGTAAGTTCACTATTGTTTGCAGGTGTGGAAACCCAAGC TGCTCTTTTACGTTGGCTCTTCCTCTACATGATGCATTTCCCAGAATATC AAACAAGAATCTATGAGGAAGTTAGATCGAATGTTGGACTGAAGCGTCGA ATATCTCCCGAGGATAAAGATGTATGTCCAACAACTAATGCAATATTACT TGAAACTCATCGCATGGCATCTGTAGGCGCTCTTAGTCTCCCTCACAAAA CGACCGTTGATACTTCAGCCGGGGGCTTTGCTATTCCGAAGGATACAATG GTCTTTGTCAACCTCTACAGCATACATTATGATCCTACACACTGGGATGA ACCAGAGAAATTCAAACCAGAACGTTGGTTGAATGTTGATGGAAGTTTGA AGAAAGAGAAGCCAACACACTATCTTCCTTTCTCAGCTGGAACGCGGGTA TGTATTGCAGAAAGAATGGCCAAAATGCAACTATTCATCATCACTACTAA CTTCTTTCGTAATTTTGAAGTTTCAAACGCTCCAGGAGAAGAATTACCAG GTCTAAAAGACGGCATCTATTGGTCAACCTTGAATCCACCTCGTCGTAAA ATTGTTGTGACGAAACGAAAACATAACTGAAAAAGGAGGAATTGGATGAA CGTATAGACAATGTTACCGTTAGTTGATGAAATCTTTACGTGATTATTTT TTTAGTTACTTAGTTATAATTAGTTCTTTTGTTGTTGGTTTTTATCTTTC ACGAATATAGAATTCATTCTTTTGATACTTCAAATTGTGGTTTCGAGTCA TCCTCGCTCTAGAATGGTAGAATTGATGCTTGTTTTTTTTCTTGTTTTTT TTTCTATTATATTTTTTTTATTACTCACTTTTTCTTTTTTTTTAAATATT ACTTTATTATATTTTCTATTTTTTTATATTTTAAATTTTTTTTGGGTTTT CGATTTTTATTTTTATTTACCTTATTGTATGGTAGGGAAGAAAATTGCTG GTGACCCTGTTTTCTTCTTGGTGCATAAGTCAGTCCAGCAAAGGGTCGAA ACTAAGCTACTTATGTACCCTGACAATATTGTCATCGGATTCGTTATTTA ACTCTACCCTTCGAACCTACCTTAGAGCACTTACAAATCGATTGTTCCTG GGGAATTTCCCTTTTTTCTCAATTATTATGACCTTTGATTGTAGGCTTAA TGTGCTTAAATAGTGGTAGTATTCGAGTATTTGTTTTGAGAACTATTTCC ATCAATGATCTTTACCATTGATTTTATCGTTTTTTTTTTTTTTGGTTTCG CTAGTTTTGGGTTCAGTTGTTAAACTTTTTTTGTTGGAAAGATCCATCTT TTGGTCTTCATCAACAATCCTGTATTATCAGGTATTATTTTCTTCATATT TATTGGGACAATCCCAATTGTTAAAGCTGTAAAGCTAACGCTTGTTAGTA TGAGTTGAATGAAACGATTAATCTATAGTTATTTAGTGAAGATGCGTCAA AAAAACCTATGGCTCCGTTTAACTAAAGTGTCGTTCGTTATTTAACCCTA ACTGACTCCTTTTTCGACTCGATCGGCATTTACTCCCGAGGTGTCTTTTT TAGACATTTACAAGCTTTTGAGTTTAGCACAAATGTCTTCTTTTCAAGCT TAAGTTGTATGGGCATTCTGGCTCTCTCCATCTTTTGATCCAAAACTTTC TATTTGAAAGGTTACAAAGTAGTTCTTGATGGTCAACCCTCTCAATGGAC CCCGATTTCAGCAGGGTTCTACTCTGGGACCCCTCTTATATATTAACGAT CTCCCAAAAGATATAATTTCCTTGATCAAGATATTCGCTGATAACTCTTC TGAATTTTCC

Coding sequence (CDS) from alignment at scaffold_476:1845..6254-

>TCONS_00067819 ID=TCONS_00067819|Name=TCONS_00067819|organism=Clytia hemisphaerica|type=CDS|length=2592bp|location=Sequence derived from alignment at scaffold_476:1845..6254- (Clytia hemisphaerica)
AAAATTCTTTGATCAACACGATGTGTCATATGTGCTACAGCAAAACGTAT
GATTTTGATGATCCAGAGTTCGTGCATATAATGGGCTACATCAAAATGTC
CAATGAAGGTCTAACACCTAACCAAGCCATATCAATTTTTCCTTGGCTGC
AATATTTCCCTGACACCGAAGCACTCAAGAAATTGAAACTTGCTGTAAAA
CAAGACACAGAATTCACACGTAAAATGTTCGATGAACATATCGCAACTTT
TGATCCTGAGAATATCAGAGATTTTACTGATAATCTACTTCATTTTTCAC
AAAACAAGGAATTATGGAAAGATGCTGGTTTTGAGACAATCACTCGAGAA
GAAATTGAACCTGTGGTAAGTTCACTATTGTTTGCAGGTGTGGAAACCCA
AGCTGCTCTTTTACGTTGGCTCTTCCTCTACATGATGCATTTCCCAGAAT
ATCAAACAAGAATCTATGAGGAAGTTAGATCGAATGTTGGACTGAAGCGT
CGAATATCTCCCGAGGATAAAGATGTATGTCCAACAACTAATGCAATATT
ACTTGAAACTCATCGCATGGCATCTGTAGGCGCTCTTAGTCTCCCTCACA
AAACGACCGTTGATACTTCAGCCGGGGGCTTTGCTATTCCGAAGGATACA
ATGGTCTTTGTCAACCTCTACAGCATACATTATGATCCTACACACTGGGA
TGAACCAGAGAAATTCAAACCAGAACGTTGGTTGAATGTTGATGGAAGTT
TGAAGAAAGAGAAGCCAACACACTATCTTCCTTTCTCAGCTGGAACGCGG
GTATGTATTGCAGAAAGAATGGCCAAAATGCAACTATTCATCATCACTAC
TAACTTCTTTCGTAATTTTGAAGTTTCAAACGCTCCAGGAGAAGAATTAC
CAGGTCTAAAAGACGGCATCTATTGGTCAACCTTGAATCCACCTCGTCGT
AAAATTGTTGTGACGAAACGAAAACATAACTGAGGTATGGAACGTGCAGT
CATTCTAAATTCATATGACGTCATCAAAGAGGCTTTAATGACCAGAGGTA
CTGACTTTGCGGGTAGACCCACAACTGACATACCAAACAAAATAATCAGT
AGAAATTTCACAAATATCGCTCACCGGGATTATTCAAAAACATGGGCGTT
TTTGAGAAAAGTTGCGTATAAAAGTTTACATGTCTATGGATCAGGAATGA
AGAGGCTTGAAGATTTGATCACAGAAGAAGTGGACAAAATGTGTTCGGTG
TTGTCACGTGATGTTGGGAAACCAGTCTTGATCGACTATTATATCGAAAA
TTCTTTGATCAACACGATGTGTCATATGTGCTACAGCAAAACGTATGATT
TTGATGATCCAGAGTTCGTGCATATAATGGGCTACATCAAAATGTCCAAT
GAAGGTCTAACACCTAACCAAGCCATATCAATTTTTCCTTGGCTGCAATA
TTTCCCTGACACCGAAGCACTCAAGAAATTGAAACTTGCTGTAAAACAAG
ACACAGAATTCACACGTAAAATGTTCGATGAACATATCGCAACTTTTGAT
CCTGAGAATATCAGAGATTTTACTGATAATCTACTTCATTTTTCACAAAA
CAAGGAATTATGGAAAGATGCTGGTTTTGAGACAATCACTCGAGAAGAAA
TTGAACCTGTGGTAAGTTCACTATTGTTTGCAGGTGTGGAAACCCAAGCT
GCTCTTTTACGTTGGCTCTTCCTCTACATGATGCATTTCCCAGAATATCA
AACAAGAATCTATGAGGAAGTTAGATCGAATGTTGGACTGAAGCGTCGAA
TATCTCCCGAGGATAAAGATGTATGTCCAACAACTAATGCAATATTACTT
GAAACTCATCGCATGGCATCTGTAGGCGCTCTTAGTCTCCCTCACAAAAC
GACCGTTGATACTTCAGCCGGGGGCTTTGCTATTCCGAAGGATACAATGG
TCTTTGTCAACCTCTACAGCATACATTATGATCCTACACACTGGGATGAA
CCAGAGAAATTCAAACCAGAACGTTGGTTGAATGTTGATGGAAGTTTGAA
GAAAGAGAAGCCAACACACTATCTTCCTTTCTCAGCTGGAACGCGGGTAT
GTATTGCAGAAAGAATGGCCAAAATGCAACTATTCATCATCACTACTAAC
TTCTTTCGTAATTTTGAAGTTTCAAACGCTCCAGGAGAAGAATTACCAGG
TCTAAAAGACGGCATCTATTGGTCAACCTTGAATCCACCTCGTCGTAAAA
TTGTTGTGACGAAACGAAAACATAACTGAGGTATGGAACGTGCAGTCATT
CTAAATTCATATGACGTCATCAAAGAGGCTTTAATGACCAGAGGTACTGA
CTTTGCGGGTAGACCCACAACTGACATACCAAACAAAATAATCAGTAGAA
ATTTCACAAATATCGCTCACCGGGATTATTCAAAAACATGGGCGTTTTTG
AGAAAAGTTGCGTATAAAAGTTTACATGTCTATGGATCAGGAATGAAGAG
GCTTGAAGATTTGATCACAGAAGAAGTGGACAAAATGTGTTCGGTGTTGT
CACGTGATGTTGGGAAACCAGTCTTGATCGACTATTATATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042353XLOC_042353Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Cytochrome p450 family memberTCONS_00067819-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067819-exon-scaffold_476-1575043694:5942..6254TCONS_00067819-exon-scaffold_476-1575043694:5942..6254Clytia hemisphaericaexon
TCONS_00067819-exon-scaffold_476-1575043694:1845..4057TCONS_00067819-exon-scaffold_476-1575043694:1845..4057Clytia hemisphaericaexon
TCONS_00067819-exon-scaffold_476-1510915933:5942..6254TCONS_00067819-exon-scaffold_476-1510915933:5942..6254Clytia hemisphaericaexon
TCONS_00067819-exon-scaffold_476-1510915933:1845..4057TCONS_00067819-exon-scaffold_476-1510915933:1845..4057Clytia hemisphaericaexon
TCONS_00067819-exon-scaffold_476-1491911889:5942..6254TCONS_00067819-exon-scaffold_476-1491911889:5942..6254Clytia hemisphaericaexon
TCONS_00067819-exon-scaffold_476-1491911889:1845..4057TCONS_00067819-exon-scaffold_476-1491911889:1845..4057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:1845..6254 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.7222 21.6017 14.1441 12.0739 2.52235 2.51038 8.23737 10.1513 8.58524 7.62421 4.35225 8.41035 5.91392 7.16656 2.2221 1.87831 10.1004 11.1014 1.74577 1.78622 5.44681 5.3524 12.2213 12.5664 13.1321 9.02783 5.64147 5.33265 4.62538 4.93815
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002401Cyt_P450_E_grp-I
IPR001128Cyt_P450
IPR017972Cyt_P450_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
BLAST of TCONS_00067819 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.810e-67
Identity = 122/411 (29.68%), Postives = 217/411 (52.80%), Query Frame = 1
Query:    1 GMERAVILNSYDVIKEALMTRGTDFAGRPTTDIPNKIISRNFTNIAHRDYSKTWAFLRKVAYKSLHVYGSGMKRLEDLITEEVDKMCSVLSRDVGKPVLIDYYIENSLINTMCHMCYSKTYDFDDPEFVHIMGYIKMSNEGLTPNQAISIFPWLQYFPDTEALKKLKLAVKQDTEFTRKMFDEHIATFDPENIRDFTDNLLHF---SQNKELWKDAGFETITREEIEPVVSSLLFAGVETQAALLRWLFLYMMHFPEYQTRIYEEVRSNVGLKRRISPEDKDVCPTTNAILLETHRMASVGALSLPHKTTVDTSAGGFAIPKDTMVFVNLYSIHYDPTHWDEPEKFKPERWLNVDGSLKKEKPTHYLPFSAGTRVCIAERMAKMQLFIITTNFFRNFEVSNAPGEELPGLK 1224
            G +  VI+  + + KE L+ +G DF+GRP     + I S N   IA  D    W   R++A  +  ++  G ++LE +I +E+  +C +L+   G+ + I + +  ++ N +  +C++ +Y   DPE   I  Y +   + L+ +  + + PWL+ FP+ + L+KLK  VK   +   K+ + +   F  ++I +  D L+     S N     D   E ++   I   +  +  AGVET  ++++W   +++H P+ + ++YEE+  NVG  R  +  D++      A + E  R+  V  + +PHK  VD+S G FA+ K T V +NL+++H++   W +P++F PER+LN  G+        YLPF AG R CI E +A+ +LF+I     + F++      +LP L+
Sbjct:   69 GTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLD-IASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPN-KTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLE 477          
The following BLAST results are available for this feature:
BLAST of TCONS_00067819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP17A4.810e-6729.68Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo s... [more]
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