TCONS_00067813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067813
Unique NameTCONS_00067813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067813 ID=TCONS_00067813|Name=TCONS_00067813|organism=Clytia hemisphaerica|type=transcript|length=2292bp
TTTTAAAGGCGTTTGACAGCGTTGTCTTTCGTGTCTTTTTTGTATTATTC
GCAAAGTCGCTCTAGTAGAGTATAAGTGAGAAGAGAATTTGATATCTTTC
AAGAAGAGATTTTTATGTTCGAAACTTAAAGCATTTTCTTGCTAATGGTA
AAGAATTTTTTACATTTGAGGTGAAGTTTTAAACCACTATCAAGTGTTTT
ATTTGAAGGTAATACAACTATAAAACATTGCATGGAAAATGATACCAATG
ATATTAGAATGGATAACATATCTCCTGTTGGCTGTTGTTGTATACAATTT
GATAGTTTACCTAAACCATGTATATGATTTAAAAGACTATCCCCCAGGCC
CTTTTCCTCTCCCTTTAATCGGGAACTTGCATTGTATTGATTTTAAAAGG
CCTcataaaacatatcaaaaactgacaaaagcTTATGGAGATGTATTCTC
GATCAGCTTTGGTATGGAGAGAATCGTCATGGTGAATACAATAGAACAAG
CCAAAGAGGCGCTCGTGACAAAATCTGCTGAATTCGCAGATGGAAAACTT
GAAGTGAAAGTTGCACAAGAAGTTGAACAAATGAATGGACGATTAATGGA
GAAAATTAATGAACCTGTCAATCTTAACGTGGAAATAAGGTTGTTCATGA
CAAATATTATCTCCACAATAGTACTTGGTGAAAGATACGAAAATATAGAA
AACCCCACATTTCAAAAGATATTAGAATTAAATAACTATTTACATTATGC
TGTATATCATGGTGatccaatttcaatttcaaaatggcagaaATATCTTC
CTATTCACTCGACTAGAATGTTATCAAGCTACTTAGCAAAGAGAGATGAA
CATTTCAGAAATGTTTTTAACAAACATAAGACGAACTTGAAACCggaaat
gttgaaaaatatgttGGACTTGTTTATCCATACATCTAGTGATGAAgagt
ttcttaaaaaacatgGAATAAGCGAGTTAACACGTGACACGATTGAAATG
GTGATGATGGACCTCCTTGATGCAAGTGTTGACAATACAGCTGTAACTCT
TTCTTGGATAATTTTGTACTTATTACATCATCCAAAATACATGAGAGAGG
CTTACAATGAGATTAAACACATGGTTAGTGCAAAAAAATACCCAAAGATG
AGCGATCANTCCACATGGTAGGAAAAAGAGTGCACAATTAAAGCGAATAG
ACTTTAGCCCACCACGCGATCTTTTATCACTTTGTGTTAGGAAAAATCCT
TGTTCGTCTGGTACAGCCTAAATTTAATCTCTTTCCTTTTTGTTCTATGA
GCAGTTTGAAGGTAATACAACTATAAAACATTGCATCGAAAATGATACCA
ATGATATTAGAATGGATAACATATCTCCTGTTGGCTGTTNTGAAtggaaa
atcaatcaaaaagggTACTCAAGTGTTGTTTCATATTTGGAATATTCATC
GAGACGAGCGGTACTGGAATGATCCAGAAATCTTTAAGCCAGAGCGTTGG
ATAgatgaaaatggaaattttgcaCCAAATNCGAGACGAGCGGTACTGGA
ATGATCCAGAAATCTTTAAGCCAGAGCGTTGGATAgatgaaaatggaaat
ttttcaccaaaaatttGTAAAAGTTACTTACCGTTTTTGATGGGCAAGCG
CGTGTGCTTTGGTGAGCAAATTGCAAGAACAGAGTTATTTATAGCTCTAA
CAAGATTATTGGTTGATTTTCATATCGAACCAGAATCTGGATTGCTGCCA
AGTCTAACTGATGTCACCATAGGTGTTAACCAATATATGACACCCTTGTA
CAAAGTAATTCTTAGAAAACGAGATGTATAAGAAGAAGCCGATGGCTATC
ATCATATCATGTAATATCAATTAATGCTTTTCATGATGCCAGAGCATGGG
AACGTCTTCAGTCTTCTACGGTATCGATACCGATAGTGAACAGATAGAAA
TTGGATTGAAAACTCTAttattctttgttaaaaattataaaaatatatac
aaaatatgATAAATATATAAATAGTTTAATATAATAGGAAATATAATATC
ACGGGTATTACTCTTAAAGTGCATCAATCTGACTTTATTTCATAGAAGTC
ATTTCCTTGTGGTCGATGGTGGTGGTTATTTATAcaagaaacttttttga
ttatATATCTGTTGACGTATTTCtttactaaaattttattacataAATTT
AACTATGAACTCCCTTTTACTCCCGCTTTTACTTTCTAAACAGCTAGCAG
TATTCAGGAGGGAACTATTGCTAGGTTGACACCACTTGATAC
Run BLAST on NCBI

protein sequence of TCONS_00067813-protein

>TCONS_00067813-protein ID=TCONS_00067813-protein|Name=TCONS_00067813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MIPMILEWITYLLLAVVVYNLIVYLNHVYDLKDYPPGPFPLPLIGNLHCI
DFKRPHKTYQKLTKAYGDVFSISFGMERIVMVNTIEQAKEALVTKSAEFA
DGKLEVKVAQEVEQMNGRLMEKINEPVNLNVEIRLFMTNIISTIVLGERY
ENIENPTFQKILELNNYLHYAVYHGDPISISKWQKYLPIHSTRMLSSYLA
KRDEHFRNVFNKHKTNLKPEMLKNMLDLFIHTSSDEEFLKKHGISELTRD
TIEMVMMDLLDASVDNTAVTLSWIILYLLHHPKYMREAYNEIKHMVSAKK
YPKMSDXSTW
Run BLAST on NCBI

transcript from alignment at scaffold_476:290456..296214+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067813 ID=TCONS_00067813|Name=TCONS_00067813|organism=Clytia hemisphaerica|type=transcript|length=5759bp|location=Sequence derived from alignment at scaffold_476:290456..296214+ (Clytia hemisphaerica)
TTTTAAAGGCGTTTGACAGCGTTGTCTTTCGTGTCTTTTTTGTATTATTC GCAAAGTCGCTCTAGTAGAGTATAAGTGAGAAGAGAATTTGATATCTTTC AAGAAGAGATTTTTATGTTCGAAACTTAAAGCATTTTCTTGCTAATGGTA AAGAATTTTTTACATTTGAGGTGAAGTTTTAAACCACTATCAAGTGTTTT AGTAAGTATATTTTCCCACCTACAATCGTGGACATAATATTTGGgacaaa agggaaatccccagtgaaaatttaaaaccacAAATGATTTGGAAGTGCCT TAATTTAAGGTGCGAATgtagaattttaactctgagtccaaaaatgctcc aaaaaggctgagaatatagcctagaagccagtcaacccctccaaaattga aatattcgatgaggTCAAATGGAAAGCCCGAAATCGTCattttcgcccga actttaattTCTGAATAACGGTGAAATACCcagaattctcaatatatttc gtccatgattgtagaattATCAGCGTTGTTGTTTTATGGACTTTCTGACT TTAGCCTTAGATTTCTTGATGTCTTGTAAGCTAATTTTCAGGCCTTGTCA AACCTCTTTTCTAAGCAAATTTGTGTACTTTATTATTTAACCTGCATTAT GTATATGTATATGCTGAGTCATCAATCGTGATCGTTCAAACTTACTGTAT TTTACGGACTAAAAAGTCCATACGGACTGCATTTAATACGGACTAAAAAA GTTTATATAATACAAATTTGTAAAACACGGACTTTTTTAATAATTAAATC GAAAAAGGTTCAGGCACCCCTGCTCGGGCAAGTTACggcctgtgcaaaaa attaacgaatcaatcaaataaaggcctgtttcgatcgcgcgagcgtgcac gctagGGCAAAATTTGCTAAAATAGCCTATTGACGTCAcgaattaaattt tcttgtaCACAAAAAGTGTATGCTTTTgtgaattttcaactttttttgag cGTACAGGAGCGCACATctcaattgataatttttcaaccaatcaagaaag agaaaaactgctgagtaaacaaaaaaatgtaaacatacagattgtgtatg tttttgatggaaatcaaACATTGATCGCGCAGAGTGTGCGTCCAaatcta ttttaagaattttagcctagcgtgcacgctcgctcgatcgatggaaacag gccttaaCGCGTGATGGCCAGTTGCATATTCCAccccttttttgggaaaa ttttttggttattttcactCGTCATTTTAATGTCTTAAAAGTCCTGGGTC CAAAATTCAGTTTCAgccattttgataaaattaaggaaaaacactttttg ctgacgtcagcaaaacgtcagcaaaaatttaaaatgctaATAACTCCTGG AATATTTGTCGAAATGAGCTCATTGATGacccaaaaactttttttctcaa aattgatgacgtcagcaaaaatcagcaattttcgttttcctcaaaaaatg ctgacatcatcaaTTTTAGGTCAATTTTTTACATccgcaaaaaatttttg gaattgaAAGACGGAAAAAACTCTTgcctattgctcattccgacatcgac tttttatttctgcctatcttctctgaggctattttctgaccccctggtga cttttctaacttatttactatgttttctgactattCTAAAGTATTTTAAC TGaccttgaaatatcgacccAAACGGGGTTCGAACCCATATCTCTATCCA ACCTACCTTcgtacaaaatttgagctcatttcaataaatattccaggaga tattagtatttcaaatttttgctgacgtcagcaaaaagagttatggctga aacagaatttttggcccaggactttttgaaaaggtattaatatgaagagt gaaaataaccaaaaatttttcgataaaaaggGATGGAACAACTGGCCGTC ACGGCCGTCACGATTCATCGAATCTTTTGCACAGGTCGTTACTTGCGTGA GTGAATAACGGTTTAAAACCTAAAAATGACCAAATGTATGCAAATTTGGC ATTGCTCCAAGATTTTAAGTACCGAATCTCTTAAAACAATTATCATTGAT TACCtcatcggccctttttacaccagCCCTTCATGGCGTTATTCTTTGGC TGGTGGTGTATAATAAGGGTCGGCGTAATAAGGTGCAAAATTTTCCATAT TTCACTGAAaagcagcaatatttttggaccattttttctcaatttaaggG GTTTCAAGTGTaattataaattaaaaacaacCATGTTTTAATCCGTACCC AAATATTCGCGAAATATTGATATTTAATGTAATACTAAAGTCCATTTGCT TTAAGTGTGCTCTCTTTTTTGCTACCATAAGGAAACCAGTGTAGTTAGAG TAgttcccttgagagtggtttccacatggtAGGAAAAAGAGTGCACAATT AAAGCGAATAGACTTTAGCCCACCACGCGATCTTTTATCACTTTGTGTTA GGAAAAATCCTTGTTCGTCTGGTACAGCCTAAATTTAATCTCTTTCCTTT TTGTTCTATGAGCAGTTTGAAGGTAATACAACTATAAAACATTGCATGGA AAATGATACCAATGATATTAGAATGGATAACATATCTCCTGTTGGCTGTT GTTGTATACAATTTGATAGTTTACCTAAACCATGTATATGATTTAAAAGA CTATCCCCCAGGCCCTTTTCCTCTCCCTTTAATCGGGAACTTGCATTGTA TTGATTTTAAAAGGCCTcataaaacatatcaaaaactgacaaaagcTTAT GGAGATGTATTCTCGATCAGCTTTGGTATGGAGAGAATCGTCATGGTGAA TACAATAGAACAAGCCAAAGAGGCGCTCGTGACAAAATCTGCTGAATTCG CAGGTAGGCCATCAAACCACCATGCATTTGCTATGATAACAAGAAATTAT CAAGATTTAGTCTTTGCTGATTATGGTTCACACTGGTTAATGCTTCGAAA ATTAGCAATCAGATCCTTAAAAATGTATGCTAATCTAGATGGAAAACTTG AAGTGAAAGTTGCACAAGAAGTTGAACAAATGAATGGACGATTAATGGAG AAAATTAATGAACCTGTCAATCTTAACGTGGAAATAAGTAAGTTTTTTCA GACAGTTTCTTTAGAAATTATCTACCGAACGTCTCTAATTTCCTCTGTCA AAAGTAAAGATATCTGCAATCAAagccataatatttgagaaaaaaaggga atctactgggaagtttttgaaccacaatcgatttgtaagtgctcctCATT TTTCTGACACTATCTACTttaagcgtacaaactttcgcgaaatttacgac atttactttcgcgaatttaaggaacaaatatttttcgcgagcataaacct TCGTGAATTGGGTGATCCAAATGAGAGgtcgaaaattcgcgaaatttacg acatttactttcgcgaatttaaggaaaaaatatttttcgcgagcataaac ttttgtgAATTGGgtgatcaaaatgaaaattttcacaccAAAAATAGCTT AAAAGTGACAAATGCTTCTTGAATTCGATTAAAAACTGGTAATATATGAC TTGAATGAGGCTTTCAAGGAATAAAAATGCTATAATTACTATTTTGTTAT TCTGATTTCAAAACTTTacagattttcaactttttcaagaattttttgtg agcataaactttcgcgaatcgccttgttaagaattttcaaagacattttc tttcgcgaaaaaggtcaaaattcgcaaaaatcttgAAAGTTTCTGCtagc gaaagtttgtacgtctaATACTTGAACGCCCCTGTCTCATTTTTCTGACA ATATCTACTACTTGAACACCCCTGTGAGGTGACTctgaataaaatcaaaa tttgagataAAAAAACTCACTGGGGTTGAAATTTTTACCTTCACCGGGAT AGGGAGAAATATTTTCCCTGAGTTCAAACTATAAAACTGATAACCTtagt atattaaaaaaagtcgaaaatgaagatgaaaaatgaataagAAAAAATCA ACTCCTGGTAGAAAAGCTTACAATATTGAATGGATTAATTTTTTCCCACT TTTAGGGTTGTTCATGACAAATATTATCTCCACAATAGTACTTGGTGAAA GATACGAAAATATAGAAAACCCCACATTTCAAAAGATATTAGAATTAAAT AACTATTTACATTATGCTGTATATCATGGTGatccaatttcaatttcaaa atggcagaaATATCTTCCTATTCACTCGACTAGAATGTTATCAAGCTACT TAGCAAAGAGAGATGAACATTTCAGAAATGTTTTTAACAAACATAAGACG AACTTGAAACCggaaatgttgaaaaatatgttGGACTTGTTTATCCATAC ATCTAGTGATGAAgagtttcttaaaaaacatgGAATAAGCGAGTTAACAC GTGACACGATTGAAATGGTGATGATGGACCTCCTTGATGCAAGTGTTGAC AATACAGCTGTAACTCTTTCTTGGATAATTTTGTACTTATTACATCATCC AAAATACATGAGAGAGGCTTACAATGAGATTAAACACATGGTTAGTGCAA AAAAATACCCAAAGATGAGCGATCANTCCACATGGTAGGAAAAAGAGTGC ACAATTAAAGCGAATAGACTTTAGCCCACCACGCGATCTTTTATCACTTT GTGTTAGGAAAAATCCTTGTTCGTCTGGTACAGCCTAAATTTAATCTCTT TCCTTTTTGTTCTATGAGCAGTTTGAAGGTAATACAACTATAAAACATTG CATCGAAAATGATACCAATGATATTAGAATGGATAACATATCTCCTGTTG GCTGTTNTGAAtggaaaatcaatcaaaaagggTACTCAAGTGTTGTTTCA TATTTGGAATATTCATCGAGACGAGCGGTACTGGAATGATCCAGAAATCT TTAAGCCAGAGCGTTGGATAgatgaaaatggaaattttgcaCCAAATNCG AGACGAGCGGTACTGGAATGATCCAGAAATCTTTAAGCCAGAGCGTTGGA TAgatgaaaatggaaatttttcaccaaaaatttGTAAAAGTTACTTACCG TTTTTGATGGGCAAGCGCGTGTGCTTTGGTGAGCAAATTGCAAGAACAGA GTTATTTATAGCTCTAACAAGATTATTGGTTGATTTTCATATCGAACCAG AATCTGGATTGCTGCCAAGTCTAACTGATGTCACCATAGGTGTTAACCAA TATATGACACCCTTGTACAAAGTAATTCTTAGAAAACGAGATGTATAAGA AGAAGCCGATGGCTATCATCATATCATGTAATATCAATTAATGCTTTTCA TGATGCCAGAGCATGGGAACGTCTTCAGTCTTCTACGGTATCGATACCGA TAGTGAACAGATAGAAATTGGATTGAAAACTCTAttattctttgttaaaa attataaaaatatatacaaaatatgATAAATATATAAATAGTTTAATATA ATAGGAAATATAATATCACGGGTATTACTCTTAAAGTGCATCAATCTGAC TTTATTTCATAGAAGTCATTTCCTTGTGGTCGATGGTGGTGGTTATTTAT AcaagaaacttttttgattatATATCTGTTGACGTATTTCtttactaaaa ttttattacataAATTTAACTATGAACTCCCTTTTACTCCCGCTTTTACT TTCTAAACAGCTAGCAGTATTCAGGAGGGAACTATTGCTAGGTTGACACC ACTTGATAC

Coding sequence (CDS) from alignment at scaffold_476:290456..296214+

>TCONS_00067813 ID=TCONS_00067813|Name=TCONS_00067813|organism=Clytia hemisphaerica|type=CDS|length=2799bp|location=Sequence derived from alignment at scaffold_476:290456..296214+ (Clytia hemisphaerica)
ATGATACCAATGATATTAGAATGGATAACATATCTCCTGTTGGCTGTTGT
TGTATACAATTTGATAGTTTACCTAAACCATGTATATGATTTAAAAGACT
ATCCCCCAGGCCCTTTTCCTCTCCCTTTAATCGGGAACTTGCATTGTATT
GATTTTAAAAGGCCTcataaaacatatcaaaaactgacaaaagcTTATGG
AGATGTATTCTCGATCAGCTTTGGTATGGAGAGAATCGTCATGGTGAATA
CAATAGAACAAGCCAAAGAGGCGCTCGTGACAAAATCTGCTGAATTCGCA
GATGGAAAACTTGAAGTGAAAGTTGCACAAGAAGTTGAACAAATGAATGG
ACGATTAATGGAGAAAATTAATGAACCTGTCAATCTTAACGTGGAAATAA
GGTTGTTCATGACAAATATTATCTCCACAATAGTACTTGGTGAAAGATAC
GAAAATATAGAAAACCCCACATTTCAAAAGATATTAGAATTAAATAACTA
TTTACATTATGCTGTATATCATGGTGatccaatttcaatttcaaaatggc
agaaATATCTTCCTATTCACTCGACTAGAATGTTATCAAGCTACTTAGCA
AAGAGAGATGAACATTTCAGAAATGTTTTTAACAAACATAAGACGAACTT
GAAACCggaaatgttgaaaaatatgttGGACTTGTTTATCCATACATCTA
GTGATGAAgagtttcttaaaaaacatgGAATAAGCGAGTTAACACGTGAC
ACGATTGAAATGGTGATGATGGACCTCCTTGATGCAAGTGTTGACAATAC
AGCTGTAACTCTTTCTTGGATAATTTTGTACTTATTACATCATCCAAAAT
ACATGAGAGAGGCTTACAATGAGATTAAACACATGGTTAGTGCAAAAAAA
TACCCAAAGATGAGCGATCANTCCACATGGTAGATGATACCAATGATATT
AGAATGGATAACATATCTCCTGTTGGCTGTTGTTGTATACAATTTGATAG
TTTACCTAAACCATGTATATGATTTAAAAGACTATCCCCCAGGCCCTTTT
CCTCTCCCTTTAATCGGGAACTTGCATTGTATTGATTTTAAAAGGCCTca
taaaacatatcaaaaactgacaaaagcTTATGGAGATGTATTCTCGATCA
GCTTTGGTATGGAGAGAATCGTCATGGTGAATACAATAGAACAAGCCAAA
GAGGCGCTCGTGACAAAATCTGCTGAATTCGCAGATGGAAAACTTGAAGT
GAAAGTTGCACAAGAAGTTGAACAAATGAATGGACGATTAATGGAGAAAA
TTAATGAACCTGTCAATCTTAACGTGGAAATAAGGTTGTTCATGACAAAT
ATTATCTCCACAATAGTACTTGGTGAAAGATACGAAAATATAGAAAACCC
CACATTTCAAAAGATATTAGAATTAAATAACTATTTACATTATGCTGTAT
ATCATGGTGatccaatttcaatttcaaaatggcagaaATATCTTCCTATT
CACTCGACTAGAATGTTATCAAGCTACTTAGCAAAGAGAGATGAACATTT
CAGAAATGTTTTTAACAAACATAAGACGAACTTGAAACCggaaatgttga
aaaatatgttGGACTTGTTTATCCATACATCTAGTGATGAAgagtttctt
aaaaaacatgGAATAAGCGAGTTAACACGTGACACGATTGAAATGGTGAT
GATGGACCTCCTTGATGCAAGTGTTGACAATACAGCTGTAACTCTTTCTT
GGATAATTTTGTACTTATTACATCATCCAAAATACATGAGAGAGGCTTAC
AATGAGATTAAACACATGGTTAGTGCAAAAAAATACCCAAAGATGAGCGA
TCANTCCACATGGTAGATGATACCAATGATATTAGAATGGATAACATATC
TCCTGTTGGCTGTTGTTGTATACAATTTGATAGTTTACCTAAACCATGTA
TATGATTTAAAAGACTATCCCCCAGGCCCTTTTCCTCTCCCTTTAATCGG
GAACTTGCATTGTATTGATTTTAAAAGGCCTcataaaacatatcaaaaac
tgacaaaagcTTATGGAGATGTATTCTCGATCAGCTTTGGTATGGAGAGA
ATCGTCATGGTGAATACAATAGAACAAGCCAAAGAGGCGCTCGTGACAAA
ATCTGCTGAATTCGCAGATGGAAAACTTGAAGTGAAAGTTGCACAAGAAG
TTGAACAAATGAATGGACGATTAATGGAGAAAATTAATGAACCTGTCAAT
CTTAACGTGGAAATAAGGTTGTTCATGACAAATATTATCTCCACAATAGT
ACTTGGTGAAAGATACGAAAATATAGAAAACCCCACATTTCAAAAGATAT
TAGAATTAAATAACTATTTACATTATGCTGTATATCATGGTGatccaatt
tcaatttcaaaatggcagaaATATCTTCCTATTCACTCGACTAGAATGTT
ATCAAGCTACTTAGCAAAGAGAGATGAACATTTCAGAAATGTTTTTAACA
AACATAAGACGAACTTGAAACCggaaatgttgaaaaatatgttGGACTTG
TTTATCCATACATCTAGTGATGAAgagtttcttaaaaaacatgGAATAAG
CGAGTTAACACGTGACACGATTGAAATGGTGATGATGGACCTCCTTGATG
CAAGTGTTGACAATACAGCTGTAACTCTTTCTTGGATAATTTTGTACTTA
TTACATCATCCAAAATACATGAGAGAGGCTTACAATGAGATTAAACACAT
GGTTAGTGCAAAAAAATACCCAAAGATGAGCGATCANTCCACATGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042350XLOC_042350Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067813-proteinTCONS_00067813-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067813-exon-scaffold_476-1491911889:290456..290656TCONS_00067813-exon-scaffold_476-1491911889:290456..290656Clytia hemisphaericaexon
TCONS_00067813-exon-scaffold_476-1510915933:290456..290656TCONS_00067813-exon-scaffold_476-1510915933:290456..290656Clytia hemisphaericaexon
TCONS_00067813-exon-scaffold_476-1575043694:290456..290656TCONS_00067813-exon-scaffold_476-1575043694:290456..290656Clytia hemisphaericaexon
TCONS_00067813-exon-scaffold_476-1491911889:293021..293358TCONS_00067813-exon-scaffold_476-1491911889:293021..293358Clytia hemisphaericaexon
TCONS_00067813-exon-scaffold_476-1510915933:293021..293358TCONS_00067813-exon-scaffold_476-1510915933:293021..293358Clytia hemisphaericaexon
TCONS_00067813-exon-scaffold_476-1575043694:293021..293358TCONS_00067813-exon-scaffold_476-1575043694:293021..293358Clytia hemisphaericaexon
TCONS_00067813-exon-scaffold_476-1491911889:293494..293592TCONS_00067813-exon-scaffold_476-1491911889:293494..293592Clytia hemisphaericaexon
TCONS_00067813-exon-scaffold_476-1510915933:293494..293592TCONS_00067813-exon-scaffold_476-1510915933:293494..293592Clytia hemisphaericaexon
TCONS_00067813-exon-scaffold_476-1575043694:293494..293592TCONS_00067813-exon-scaffold_476-1575043694:293494..293592Clytia hemisphaericaexon
TCONS_00067813-exon-scaffold_476-1491911889:294561..296214TCONS_00067813-exon-scaffold_476-1491911889:294561..296214Clytia hemisphaericaexon
TCONS_00067813-exon-scaffold_476-1510915933:294561..296214TCONS_00067813-exon-scaffold_476-1510915933:294561..296214Clytia hemisphaericaexon
TCONS_00067813-exon-scaffold_476-1575043694:294561..296214TCONS_00067813-exon-scaffold_476-1575043694:294561..296214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:290456..296214 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
67.4288 65.7032 14.4343 7.98849 1.41295 1.26171 3.79255 3.13545 0.189372 1.82761 3.30708 0.494153 0 0 0 0 3.22648 3.30589 0 0.018946 12.6273 11.0584 56.8193 48.9051 0.465505 0.411667 3.28018 3.56944 24.4165 28.82
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002401Cyt_P450_E_grp-I
IPR001128Cyt_P450
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
BLAST of TCONS_00067813 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.515e-19
Identity = 77/333 (23.12%), Postives = 134/333 (40.24%), Query Frame = 2
Query:  338 YPPGPFPLPLIGNLHCID-FKRPHKTYQKLTKAYGDVFSISFGMERIVMVNTIEQAKEALVTKSAEFA--------------------------------------------DGKLEVKVAQEVEQMNGRLMEKINEPVNLNVEIRLFMTNIISTIVLGERYENIENPTFQKILELNNYLHYAVYHGDPISISKWQKYLPIHSTRMLSSYLAKRDEHFRNVFNKHKTNLKPEMLKNMLDLFIHT--SSDEEFLKKHGISELTRDT-IEMVMMDLLDASVDNTAVTLSWIILYLLHHPKYMREAYNEIKHMVSAKKYPKMSDXSTW*EKECTIK 1192
            YP     LPL+G+L  +      H  + KL K YG ++S+  G +  V+V   + AKE L+ K  +F+                                            D KLE  + QE+  +   L     + ++++  + + +TN+IS I     Y+N  +P    I   N  +   +     + +  W K  P  +   L S++  R++    +   +K   + + + NMLD  +    +SD         SEL  D  I   + D+  A V+ T   + W + +LLH+P+  ++ Y EI   V   + P +SD +     E TI+
Sbjct:   27 YPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKN-GDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIR 358          
The following BLAST results are available for this feature:
BLAST of TCONS_00067813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP17A3.515e-1923.12Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo s... [more]
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