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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067812 ID=TCONS_00067812|Name=TCONS_00067812|organism=Clytia hemisphaerica|type=transcript|length=902bp
TCGTTCCACTGCTAAGAAAggttatattttcttatttttttaacaaaaag
tttgGTCGTGATCGTGGGTCACGTGTAACATTTTAGAAGAATGATATCAA
CTTAGGATATTCTTATACCGAATGGTTACATTTTTTGTCGTGTTCTATGT
TTAACTCTGAACCAGGTTGTTTATGTTACAAGGTGGTGTTACAAACAGAA
TCTTATCGAACGTAGACAAGTGATACCAACCCTGCAGCACTTGTTCAACA
TTTAAACATCATAACTAACCCCATTGACGTACCAATCACATTCAAAGTAA
CCGAATGAACCGGATCTAACTTTCAAAATGTACAGTGAACATCATGCGAA
AACATTCGATTTCTATCACCATAAAACAAAGTATCAACCTTGCTTTCcta
ttataagaatattcaagaAACTCACTATCCGGGATCCTTTGTTTCCCGAC
CCTgATCATCCATATTGCTTGTACTGGTCAAAGATTGATCGACTTACTGG
ATAGCGAACAATATTGGAGGATTTCGGTAAAAAACGCTGCTAGATGAAAG
AAGTATTTATCGGAAGAACAGAGTGAAAGAATGGAAGATTCTTGTGGTGT
CTGGTATACGTTATCTTAATTTTCGGTTTGAGAAATAATAGTTTTTTGTT
CGGTGtttgtatatattttgaaaGCTGGTAAGCAAGCAAGCAAGTAAACG
TCTGTAAGGTTCTGAGATTCTTTTTACCATAAGTGTAAATATTTTTGCGG
GTattaaatttttgcgaatcgCGAAATTCTTTCTGGAAAAGTGTTCTATC
GAATGTTTTGTCTCCTTTTCGAATAGTTTGCTTTATTTAACCACCAAGTA
ATCGGATATCTatcaatttctaaattttcgtcgtcgtttttgtttttcaa
at Run BLAST on NCBI transcript from alignment at scaffold_476:200711..205085+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067812 ID=TCONS_00067812|Name=TCONS_00067812|organism=Clytia hemisphaerica|type=transcript|length=4375bp|location=Sequence derived from alignment at scaffold_476:200711..205085+ (Clytia hemisphaerica)
TCGTTCCACTGCTAAGAAAggttatattttcttatttttttaacaaaaag
tttgGTCGTGATCGTGGGTCACGTGTAACATTTTAGAAGAATGATATCAA
CTTAGGATATTCTTATACCGAATGGTTACATTTTTTGTCGTGTTCTATGT
TTAACTCTGAACCAGGTagatttttggatattttgacaaatttatttCTT
TAATTATCTTTAGAACTTTCAATTAATCTTGGAATTTCGGGatattttga
aagtgatatTGTTGGCAGATTTTGAGTATCTTGGCAGATTTTGAGTATCT
TGGCAGATTTTGAGTATCTTGGCAGATTTTGAGTATCTTGGCAGATTTTG
AGTATCTTGGCAGATTTTGAGTATCTTGGCAGATTTTGAGTATCTTGGCA
GATTTTGAGTATCTTGGCAGATTTTGAGTATCTTGGCAGATTTTGAGTAT
CTTGGCAGATTTTGAGTATCTTGGCAAATTTTGAGTATCTTGGCAAATTT
TGAGTATCTTGGCAAATTTTGAGTATCTTGGCAAATTTTGAGTATCTTGG
CAAATTTTGAGTATCTTGGCAAATTTTGATTATCTTGGCAAATTTTGATT
ATCTTGGCAAATTTTGAGTATCTTGGCAAATTTTGAGTATCTTGGCAAAT
TTTGAGTATCTTGGCAAATTTTGAGTATCTTGGCAAATTTTGAGTATCTT
GGCAAATTTTTGGGTTACTAATCTGGGATGGTTTAGAGAGTTTCAACATA
TTTTTGGAGTGTGATTTATTGCGTGCCTtgcgtgccctcgtgggtctcGT
GGGTTACGTGgctcgtgccctcgtgggtcacGTGCCTTCGTGGGTCCAGA
AGAATATTACGTGGGTCCAAAAGAAATTTGcgtgggtatctcgtgggtcc
gaaaaacaattacgtgggtccaaaaaattaTGCGAGTCCTTAAAATTTGA
CATCAAAATTTTACGAATTTTACGTAAAGAAGCTTATTTTAAGCTTACAA
AAACCTAAAGAACATAACCGATAGCGCTTGATCgaaatttgttttcttta
ttaTCTTGATCCAGAAGCCTTTTTCTTTCGACAATTTAATTTAGTAGGAT
TATACCGCAGATTGTTTTCCTCGGTGGATGGAATCCTTACAGTACTCCAC
GTAAACACAAAATTCTAGAAGTTTGCTAGGATTAGATCTCGCGATTTTGG
GGCTTCCTAATAATTCGTCGggatttaaccctttaactgccgttcgtatt
ttttaaggttcgacctatttgccacgggaaaaaaagaaggttcgacctat
ttgccagatgtcggcatatgccgacatNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtttgacttcattttctgaataatatat
gaagtatcagccaaggactataattttgagttgaacattgttgaatagtt
atttttcaacatagaaaagcttttaactaatatcttttttcatttcaaac
catctaatacaaaatctttgtagaagtgttaaattttggggcaaagaaat
ggaaaaagctcatgtcggcatatgcatatgcattttttttctcttcaaaa
atcAGGTTTCAATATTCATGGTTATTTACACTCTTCAagcaatttcttca
aaagttacAATATTCTCCTTCGATCCagaaaacgaatttttcagttaaaa
aagaaaaagctcaAAAAGAATTGAATGAGTGGACTTGTCATAGTCTattt
ttcccgggggggggggcactcaaggtaaatgacctaccagacgttcggcc
cttaagggtacgtttttcatagttcagctagtgcactgtaagggtaggaa
attacaagactgcactgaactgcactgtaagggtaggaaattttggtaaa
agggcaattttttggtaaaattatcacaaaattggtcaattttggaggaa
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaattggt
caattttggaggaaaaattccacattttcttggaaaattgcaaaaatttt
cgcccttacgggcgagaaatttcgaaaaagtgcactgtaagggtatgatt
tttcatgcaAATTCACTGCAcagtaagggtccgattttagaagccaaatt
ttgggccgaacgtatggtcgatttcagatcgagtgcccccccccgggcta
tTTTTACATAAGGTCAATTATACAATCAGGATTGTACCGATTGTATACAC
TTTTGTAGGAAAACAGTCTCTCTTGAAAAGTCTTACAAACTCTAAAGTAC
TTAAAGAACTGCATAAGGTTTTTGTTCGGCGCGAGTCTATACACAGAGTC
TTGGCGCaattttttggacccacgagataACCACGTAAATTTTGtggacc
cacgagatacccacgtaatttttttttggacccacgattACCCACGTAAT
ATTTTTTGGACCCATGagatacccacgtaatttttttgcaCCCACGAGAT
TCCCacgtaaattttttttggacccacgagatgCCAATGAAGGTACGAGA
CCAACGAAGGTACGAGACCCACGTAGGCACGTGATCCACgtaacccacga
gggcacgagcCACGTAACTCGGgagacccacgagggcacgcaAGGTACGC
AATATAATCTCACTCATATTTTTGATACTTCggcaaaattttgagagaaa
attgaTTTGTTAAGAGTGGAACGATCAGAAACGATATTTCCCGCCTATAA
TATAATGGTGCTTATAGATGGGGGACCTGGGGATCATATTCTATGCTCAC
AAATCATTTTTTCTTCCTATAtaacatccctgtgtcacagacccacaaCG
ACCCAAGTCCCATTGGAAAATCAGGGCAAATTTCCgaccccggtgggaaa
ataccctagaatttcaacCCAACTAGggaattgttttgatttcattccTT
AAATGCGATCAAAAACAAATCGAAAAGATTTAGGTTACTTAACTAGACGT
GCAAAATGTGATTTAGTACCCAGAATTTAATGCGTCCTAAAGGGCAGGAA
AATAGTTACGTAAACTGCTTAAATTACTTTGATAAAACTTgttattaaaa
ttatttttgagtttgAATGGAATGGAAACTCAATGGAAGATTAGACTACG
ATAGAAGAGTAAACCGCCGCCAAAAACAATGTTTTCATTTCTATGGAAAG
ATAATTCAGTAATTATCCTCTTTATTTCTTCAGGTTGTTTATGTTACAAG
GTGGTGTTACAAACAGAATCTTATCGAACGTAGACAAGTGATACCAACCC
TGCAGCACTTGTTCAACATTTAAACATCATAACTAACCCCATTGACGTAC
CAATCACATTCAAAGTAACCGAATGAACCGGATCTAACTTTCAAAATGTA
CAGTGAACATCATGCGAAAACATTCGATTTCTATCACCATAAAACAAAGT
ATCAACCTTGCTTTCctattataagaatattcaagaAACTCACTATCCGG
GATCCTTTGTTTCCCGACCCTggtaaatacaaatttgaattcaatttttg
attccgttttctaatttttcctgATCTTCACACTTGGTTAACAATTAGAA
TGGCGTTTCCAACACTTTCCAGTCTACTGTGCATTGCCTTCAGTTTCACA
ATGACGAACCACTAAACTAATAGCCGATCACTATCCAAACACACGATTTT
TTTATCACACGGCAACTAAACTGAGGACTAAAGTGCTAAGGGCTTCGAAC
TCACGACTTCCGAACATTTAAGTGACAGAATTTATGGTATGATAGTTGGT
TTTCTACTTATACTGTTCCTCTCTTAGATCATCCATATTGCTTGTACTGG
TCAAAGATTGATCGACTTACTGGATAGCGAACAATATTGGAGGATTTCGG
TAAAAAACGCTGCTAGATGAAAGAAGTATTTATCGGAAGAACAGAGTGAA
AGAATGGAAGATTCTTGTGGTGTCTGGTATACGTTATCTTAATTTTCGGT
TTGAGAAATAATAGTTTTTTGTTCGGTGtttgtatatattttgaaaGCTG
GTAAGCAAGCAAGCAAGTAAACGTCTGTAAGGTTCTGAGATTCTTTTTAC
CATAAGTGTAAATATTTTTGCGGGTattaaatttttgcgaatcgCGAAAT
TCTTTCTGGAAAAGTGTTCTATCGAATGTTTTGTCTCCTTTTCGAATAGT
TTGCTTTATTTAACCACCAAGTAATCGGATATCTatcaatttctaaattt
tcgtcgtcgtttttgtttttcaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067812-exon-scaffold_476-1491911889:200711..200875 | TCONS_00067812-exon-scaffold_476-1491911889:200711..200875 | Clytia hemisphaerica | exon |
| TCONS_00067812-exon-scaffold_476-1510915933:200711..200875 | TCONS_00067812-exon-scaffold_476-1510915933:200711..200875 | Clytia hemisphaerica | exon |
| TCONS_00067812-exon-scaffold_476-1575043694:200711..200875 | TCONS_00067812-exon-scaffold_476-1575043694:200711..200875 | Clytia hemisphaerica | exon |
| TCONS_00067812-exon-scaffold_476-1491911889:204044..204332 | TCONS_00067812-exon-scaffold_476-1491911889:204044..204332 | Clytia hemisphaerica | exon |
| TCONS_00067812-exon-scaffold_476-1510915933:204044..204332 | TCONS_00067812-exon-scaffold_476-1510915933:204044..204332 | Clytia hemisphaerica | exon |
| TCONS_00067812-exon-scaffold_476-1575043694:204044..204332 | TCONS_00067812-exon-scaffold_476-1575043694:204044..204332 | Clytia hemisphaerica | exon |
| TCONS_00067812-exon-scaffold_476-1491911889:204638..205085 | TCONS_00067812-exon-scaffold_476-1491911889:204638..205085 | Clytia hemisphaerica | exon |
| TCONS_00067812-exon-scaffold_476-1510915933:204638..205085 | TCONS_00067812-exon-scaffold_476-1510915933:204638..205085 | Clytia hemisphaerica | exon |
| TCONS_00067812-exon-scaffold_476-1575043694:204638..205085 | TCONS_00067812-exon-scaffold_476-1575043694:204638..205085 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:200711..205085 + |
Blast
The following BLAST results are available for this feature:
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