XLOC_042349 (gene) - C. hemisphaerica

Overview
NameXLOC_042349
Unique NameXLOC_042349
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_476:200711..205085+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042349 ID=XLOC_042349|Name=XLOC_042349|organism=Clytia hemisphaerica|type=gene|length=4375bp|location=Sequence derived from alignment at scaffold_476:200711..205085+ (Clytia hemisphaerica)
TCGTTCCACTGCTAAGAAAggttatattttcttatttttttaacaaaaag
tttgGTCGTGATCGTGGGTCACGTGTAACATTTTAGAAGAATGATATCAA
CTTAGGATATTCTTATACCGAATGGTTACATTTTTTGTCGTGTTCTATGT
TTAACTCTGAACCAGGTagatttttggatattttgacaaatttatttCTT
TAATTATCTTTAGAACTTTCAATTAATCTTGGAATTTCGGGatattttga
aagtgatatTGTTGGCAGATTTTGAGTATCTTGGCAGATTTTGAGTATCT
TGGCAGATTTTGAGTATCTTGGCAGATTTTGAGTATCTTGGCAGATTTTG
AGTATCTTGGCAGATTTTGAGTATCTTGGCAGATTTTGAGTATCTTGGCA
GATTTTGAGTATCTTGGCAGATTTTGAGTATCTTGGCAGATTTTGAGTAT
CTTGGCAGATTTTGAGTATCTTGGCAAATTTTGAGTATCTTGGCAAATTT
TGAGTATCTTGGCAAATTTTGAGTATCTTGGCAAATTTTGAGTATCTTGG
CAAATTTTGAGTATCTTGGCAAATTTTGATTATCTTGGCAAATTTTGATT
ATCTTGGCAAATTTTGAGTATCTTGGCAAATTTTGAGTATCTTGGCAAAT
TTTGAGTATCTTGGCAAATTTTGAGTATCTTGGCAAATTTTGAGTATCTT
GGCAAATTTTTGGGTTACTAATCTGGGATGGTTTAGAGAGTTTCAACATA
TTTTTGGAGTGTGATTTATTGCGTGCCTtgcgtgccctcgtgggtctcGT
GGGTTACGTGgctcgtgccctcgtgggtcacGTGCCTTCGTGGGTCCAGA
AGAATATTACGTGGGTCCAAAAGAAATTTGcgtgggtatctcgtgggtcc
gaaaaacaattacgtgggtccaaaaaattaTGCGAGTCCTTAAAATTTGA
CATCAAAATTTTACGAATTTTACGTAAAGAAGCTTATTTTAAGCTTACAA
AAACCTAAAGAACATAACCGATAGCGCTTGATCgaaatttgttttcttta
ttaTCTTGATCCAGAAGCCTTTTTCTTTCGACAATTTAATTTAGTAGGAT
TATACCGCAGATTGTTTTCCTCGGTGGATGGAATCCTTACAGTACTCCAC
GTAAACACAAAATTCTAGAAGTTTGCTAGGATTAGATCTCGCGATTTTGG
GGCTTCCTAATAATTCGTCGggatttaaccctttaactgccgttcgtatt
ttttaaggttcgacctatttgccacgggaaaaaaagaaggttcgacctat
ttgccagatgtcggcatatgccgacatNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtttgacttcattttctgaataatatat
gaagtatcagccaaggactataattttgagttgaacattgttgaatagtt
atttttcaacatagaaaagcttttaactaatatcttttttcatttcaaac
catctaatacaaaatctttgtagaagtgttaaattttggggcaaagaaat
ggaaaaagctcatgtcggcatatgcatatgcattttttttctcttcaaaa
atcAGGTTTCAATATTCATGGTTATTTACACTCTTCAagcaatttcttca
aaagttacAATATTCTCCTTCGATCCagaaaacgaatttttcagttaaaa
aagaaaaagctcaAAAAGAATTGAATGAGTGGACTTGTCATAGTCTattt
ttcccgggggggggggcactcaaggtaaatgacctaccagacgttcggcc
cttaagggtacgtttttcatagttcagctagtgcactgtaagggtaggaa
attacaagactgcactgaactgcactgtaagggtaggaaattttggtaaa
agggcaattttttggtaaaattatcacaaaattggtcaattttggaggaa
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaattggt
caattttggaggaaaaattccacattttcttggaaaattgcaaaaatttt
cgcccttacgggcgagaaatttcgaaaaagtgcactgtaagggtatgatt
tttcatgcaAATTCACTGCAcagtaagggtccgattttagaagccaaatt
ttgggccgaacgtatggtcgatttcagatcgagtgcccccccccgggcta
tTTTTACATAAGGTCAATTATACAATCAGGATTGTACCGATTGTATACAC
TTTTGTAGGAAAACAGTCTCTCTTGAAAAGTCTTACAAACTCTAAAGTAC
TTAAAGAACTGCATAAGGTTTTTGTTCGGCGCGAGTCTATACACAGAGTC
TTGGCGCaattttttggacccacgagataACCACGTAAATTTTGtggacc
cacgagatacccacgtaatttttttttggacccacgattACCCACGTAAT
ATTTTTTGGACCCATGagatacccacgtaatttttttgcaCCCACGAGAT
TCCCacgtaaattttttttggacccacgagatgCCAATGAAGGTACGAGA
CCAACGAAGGTACGAGACCCACGTAGGCACGTGATCCACgtaacccacga
gggcacgagcCACGTAACTCGGgagacccacgagggcacgcaAGGTACGC
AATATAATCTCACTCATATTTTTGATACTTCggcaaaattttgagagaaa
attgaTTTGTTAAGAGTGGAACGATCAGAAACGATATTTCCCGCCTATAA
TATAATGGTGCTTATAGATGGGGGACCTGGGGATCATATTCTATGCTCAC
AAATCATTTTTTCTTCCTATAtaacatccctgtgtcacagacccacaaCG
ACCCAAGTCCCATTGGAAAATCAGGGCAAATTTCCgaccccggtgggaaa
ataccctagaatttcaacCCAACTAGggaattgttttgatttcattccTT
AAATGCGATCAAAAACAAATCGAAAAGATTTAGGTTACTTAACTAGACGT
GCAAAATGTGATTTAGTACCCAGAATTTAATGCGTCCTAAAGGGCAGGAA
AATAGTTACGTAAACTGCTTAAATTACTTTGATAAAACTTgttattaaaa
ttatttttgagtttgAATGGAATGGAAACTCAATGGAAGATTAGACTACG
ATAGAAGAGTAAACCGCCGCCAAAAACAATGTTTTCATTTCTATGGAAAG
ATAATTCAGTAATTATCCTCTTTATTTCTTCAGGTTGTTTATGTTACAAG
GTGGTGTTACAAACAGAATCTTATCGAACGTAGACAAGTGATACCAACCC
TGCAGCACTTGTTCAACATTTAAACATCATAACTAACCCCATTGACGTAC
CAATCACATTCAAAGTAACCGAATGAACCGGATCTAACTTTCAAAATGTA
CAGTGAACATCATGCGAAAACATTCGATTTCTATCACCATAAAACAAAGT
ATCAACCTTGCTTTCctattataagaatattcaagaAACTCACTATCCGG
GATCCTTTGTTTCCCGACCCTggtaaatacaaatttgaattcaatttttg
attccgttttctaatttttcctgATCTTCACACTTGGTTAACAATTAGAA
TGGCGTTTCCAACACTTTCCAGTCTACTGTGCATTGCCTTCAGTTTCACA
ATGACGAACCACTAAACTAATAGCCGATCACTATCCAAACACACGATTTT
TTTATCACACGGCAACTAAACTGAGGACTAAAGTGCTAAGGGCTTCGAAC
TCACGACTTCCGAACATTTAAGTGACAGAATTTATGGTATGATAGTTGGT
TTTCTACTTATACTGTTCCTCTCTTAGATCATCCATATTGCTTGTACTGG
TCAAAGATTGATCGACTTACTGGATAGCGAACAATATTGGAGGATTTCGG
TAAAAAACGCTGCTAGATGAAAGAAGTATTTATCGGAAGAACAGAGTGAA
AGAATGGAAGATTCTTGTGGTGTCTGGTATACGTTATCTTAATTTTCGGT
TTGAGAAATAATAGTTTTTTGTTCGGTGtttgtatatattttgaaaGCTG
GTAAGCAAGCAAGCAAGTAAACGTCTGTAAGGTTCTGAGATTCTTTTTAC
CATAAGTGTAAATATTTTTGCGGGTattaaatttttgcgaatcgCGAAAT
TCTTTCTGGAAAAGTGTTCTATCGAATGTTTTGTCTCCTTTTCGAATAGT
TTGCTTTATTTAACCACCAAGTAATCGGATATCTatcaatttctaaattt
tcgtcgtcgtttttgtttttcaaat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067812TCONS_00067812Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:200711..205085 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.75	10.58	10.26	11.4	0.9	0.76	0.2	0.31	0.04	0.16	0	0.03	0.1	0	0	0.03	0.08	0.12	0	0	0.15	0.14	8.92	8.33	0	0.1	0.35	0.82	6.42	7.41