TCONS_00067811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067811
Unique NameTCONS_00067811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067811 ID=TCONS_00067811|Name=TCONS_00067811|organism=Clytia hemisphaerica|type=transcript|length=253bp
CTTTTGTCTACAGCGTCGAATCCTTCCCTTGGGAGAACCTTTTACGCTTC
ATTGATTTTTAGagagaaaatgacaaaataattTGAAGCAACAGGCTTGT
CGACATATCACTTTGAGAGAAGAGGGAGGCGTAGGGAAAGATTTTCCTGA
TGCGCTCGATGCTTGAAGTCAATCTTTTGGATTTTTAGTACTGTATCACA
CAACATCTGAATAACATGAAATATAAGAAGTGAACTGGCATGTCTTCCCA
ATC
Run BLAST on NCBI

transcript from alignment at scaffold_476:200171..200660+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067811 ID=TCONS_00067811|Name=TCONS_00067811|organism=Clytia hemisphaerica|type=transcript|length=490bp|location=Sequence derived from alignment at scaffold_476:200171..200660+ (Clytia hemisphaerica)
CTTTTGTCTACAGCGTCGAATCCTTCCCTTGGGAGAACCTTTTACGCTTC
ATTGATTTTTAGagagaaaatgacaaaataattTGAAGCAACAGGCTTGT
CGACATATCACTTTGAGAGAAGAGGGAGGCGTAGGGAAAGATTTTCCTGA
TGCGCTCGATGCTTGAAGTCAATCTTTTGGATTTTTAGTACTGTATCACA
CAACATCTGAATAACATGAAATATAAGAAGGTATATAAGTACGACTGGAC
TTCATAATaatattttagcttttttttcttagattttttttgaaaattca
gtagaatattctttttttgattCTCAAAACTGATCTTATTTTTCCGATTT
AGTTTAGTTCTGTCTATGACTATAGTCACATTTTATAATTATTTCTACCG
ATGTCAGAAATTTTTACGATCGAGGGCCTCGACTTTTTCTAAAGCAACTT
TTCTCATTCATTTTCAGTGAACTGGCATGTCTTCCCAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042348XLOC_042348Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067811-exon-scaffold_476-1491911889:200171..200400TCONS_00067811-exon-scaffold_476-1491911889:200171..200400Clytia hemisphaericaexon
TCONS_00067811-exon-scaffold_476-1510915933:200171..200400TCONS_00067811-exon-scaffold_476-1510915933:200171..200400Clytia hemisphaericaexon
TCONS_00067811-exon-scaffold_476-1575043694:200171..200400TCONS_00067811-exon-scaffold_476-1575043694:200171..200400Clytia hemisphaericaexon
TCONS_00067811-exon-scaffold_476-1491911889:200638..200660TCONS_00067811-exon-scaffold_476-1491911889:200638..200660Clytia hemisphaericaexon
TCONS_00067811-exon-scaffold_476-1510915933:200638..200660TCONS_00067811-exon-scaffold_476-1510915933:200638..200660Clytia hemisphaericaexon
TCONS_00067811-exon-scaffold_476-1575043694:200638..200660TCONS_00067811-exon-scaffold_476-1575043694:200638..200660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:200171..200660 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.58152	4.27868	5.79594	5.67043	0.986171	0.779286	0	0	0.616235	0	0	0	0	0	0	0	0	0	0	0	0	0	8.38471	3.81146	0	0	0	1.07014	2.43499	4.96174
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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