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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067810 ID=TCONS_00067810|Name=TCONS_00067810|organism=Clytia hemisphaerica|type=transcript|length=2512bp
GGTTTACAGTGGACTTTGGTTCTTGAGAAGCATTTGGACGCAGTAATTGC
ATCACTATGACTTGAGAATCCAAATGTGAACACAACGTTGAAACGTGTTG
CCATCGACATACCTTGTCTGATGTTACCATGAAATGTGTGTCGTGGAATA
TCATTGCCTTTCATCATCCCGATGGTCCGACGCATTCGAGACTCTGACAT
CCACTAATCTCATCCAAAGATAATCGAGAGATAGTGTCTTCAAATATAGT
TTACCTATCATAAAGATGACGGAGACAACAACCTAAATGAAGAAAAGATT
CAAAACATGTCAAGTTTAACCCAATCTTTAATTTGATGTTGTGGATGATA
ACTGGATTTGTCTTCAAAGATGCAGGAAGAAGATATTCAAGAAGGTCAGC
TTTTGGACATTGTGTTTTTATTGCTGACCAAGTCTTCAAAAACACTTCCA
ACCAACAACGTCATGTCTTTGGAGGTGACACAACACGTGGATCAACGAGT
TCCTTCAAAGCATTGGCAAACAAGAACAaatttgggtttgtttctgatgA
ATCTTCCGTTTCCTTCAGGAACCGCTCATTGATTACAGCTGCATGCGGGG
AAAGCATCGTTCCATCATTGCCATTACACGAAAGGCGATACAGTCAACCT
TCTGACGGAATTGATGAGTTGACTTCCGCCTTTCAACGTCTTTCAGTAAA
CGGCTCCCCGCCCATTGATCCGCCCACAGCACCCATCGTGCAAACAGCAG
CACCCATTGATCCGCCCACAGCACCCATCGTGCAAGCAGCAGCACCCATT
GAGCCGCCCGCAGCACTTATCGCNTACAGTGGACTTTGGTTCTTGAGAAG
CATTTGGACGCAGTAATTGCATCACTATGACTTGAGAATCCAAATGTGAA
CACAACGTTGAAACGTGTTGCCATCGACATACCTTGTCTGATGTTACCAT
GAAATGTGTGTCGTGGAATATCATTGCCTTTCATCATCCCGATGGTCCGA
CGCATTCGAGACTCTGACATCCACTAATCTCATCCAAAGATAATCGAGAG
ATAGTGTCTTCAAATATAGTTTACCTATCATAAAGATGACGGAGACAACA
ACCTAAATGAAGAAAAGATTCAAAACATGTCAAGTTTAACCCAATCTTTA
ATTTGATGTTGTGGATGATAACTGGATTTGTCTTCAAAGATGCAGGAAGA
AGATATTCAAGAAGGTCAGCTTTTGGACATTGTGTCTTTATTGCTGACCA
AGTCTTCAAAAATACTTCCAACCAACAACGTCATGTCTTTGGAGGTGACA
CAACACGTGGATCAACGAGTTCCTTCAAAGCATTGGCAAACAAGAACAAA
TTTGGGTTTATTTCTGATGAATCTTCCGTTTCCTTCAGGAACCGCTCATT
GATTACAGCTGCATGCGGGGAAAGCATCGTTCCATCATTGCCACTACACG
AAAGGCGATACAGTCAACCTTCAGACGGAATTGATGAGTTGACTTCCGCC
TTTCAACGTCTTTCAGTAAACGGCTCCCCGCCCATTGATCCGCCCACAGC
ACCCATCGTGCAAACAGCAGCACCCATTGATCCGCCCACAGCACCCATCG
TGCAAGCAGCAGCACCCATTGAGCCGCCCGCAGCACTTATCGCGCAATCC
ACAACACCAGTTGAAAATTCATTAACAGCTAATGAGATAACCACAGCATT
CTCTTCAACTATAAGTGACCACACTACCACAATCACCACCGGACACGCTT
TACCCGACTTCGAATCCACCGACCTCATTGATGCTCTTGAACAGGAATCA
GCTGAAGCGATGGGCGGCACCCACGGTGGCGGTCAACCTCTAGTGGCGGG
TGCAATCACAAATGGGTTCTCCTCTAATGAGGAGTACTATCAATTTCTTC
AGCTCATGCTGACTGCTGTCAATCAGCTGCAACAAGAACTCTTGATGGAA
GAGCGTGCTGAACAGGCTGCAAGAGACGCACGGGCCACACGGGCTCTTCG
TGATCTTGCTGCGAACGAAAACCGCGCTCAACCCATTCGACACGCTCGAC
GAAGAAGACGTCGCGAAGAAATGGAGGGCCTCGAGAATGATCCTAACGCC
GCTAAACGGCGCCGAAGACTTTAAGTCTTTAAACAAAATGCTTCGAAGAT
ACCCTCACGCACTCACTCCACCTTTCAAACCAACAATCTATTTTCTTAAC
AAACCCAACGTACATCCATCGTCCACTTCCCAATGCAATAATCCTCTTCT
TGAGGCTAAATAATAAGTAACcggagaagaaagaagaaaatccaATTCCA
TACCGAACGAACGAAATTCCAGGAAAACACAACAGTTGACTTCAATAAAC
TAACTTAAATCACGTGACTTCATCTCACCGATATGGTCAGAGCAAAACCT
TCCCATCGAAGCtaaaaatatatcatttataATATATCAATCATTTCTAT
TAATTTGTTCAGTTTTTGCATGATAAGTTTGAACAGTGAAATCCCTATTA
TCCTTCATCAGA Run BLAST on NCBI protein sequence of TCONS_00067810-protein >TCONS_00067810-protein ID=TCONS_00067810-protein|Name=TCONS_00067810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MLWMITGFVFKDAGRRYSRRSAFGHCVFIADQVFKNTSNQQRHVFGGDTT
RGSTSSFKALANKNKFGFISDESSVSFRNRSLITAACGESIVPSLPLHER
RYSQPSDGIDELTSAFQRLSVNGSPPIDPPTAPIVQTAAPIDPPTAPIVQ
AAAPIEPPAALIAQSTTPVENSLTANEITTAFSSTISDHTTTITTGHALP
DFESTDLIDALEQESAEAMGGTHGGGQPLVAGAITNGFSSNEEYYQFLQL
MLTAVNQLQQELLMEERAEQAARDARATRALRDLAANENRAQPIRHARRR
RRREEMEGLENDPNAAKRRRRL Run BLAST on NCBI transcript from alignment at scaffold_476:192443..196110+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067810 ID=TCONS_00067810|Name=TCONS_00067810|organism=Clytia hemisphaerica|type=transcript|length=3668bp|location=Sequence derived from alignment at scaffold_476:192443..196110+ (Clytia hemisphaerica)
GGTTTACAGTGGACTTTGGTTCTTGAGAAGCATTTGGACGCAGTAATTGC
ATCACTATGACTTGAGAATCCAAATGTGAACACAACGTTGAAACGTGTTG
CCATCGACATACCTTGTCTGATGTTACCATGAAATGTGTGTCGTGGAATA
TCATTGCCTTTCATCATCCCGATGGTCCGACGCATTCGAGACTCTGACAT
CCACTAATCTCATCCAAAGATAATCGAGAGATAGTGTCTTCAAATATAGT
TTACCTATCATAAAGATGACGGAGACAACAACCTAAATGAAGAAAAGATT
CAAAACATGTCAAGTTTAACCCAATCTTTAATTTGATGTTGTGGATGATA
ACTGGATTTGTCTTCAAAGGTAAGAATCCAAAATTCGGGTGTTTTACTAT
CAGTTTTCTCTTTATATAGAATGTGTAGCCTGGATGTGAATCTATTGTCC
AACTGACTAGGATTTTCTTTAAGTTTATTCACTTCGAGGCCAAGCAAAAC
CAAACATAATTTCTGAGTCCTGATTTTGCTCAGGGTCAGGGGGTTTCAAA
TTATGAATACTAGACAACAtcataaaatgacgtcacagtaTCTCtctaaa
tattaaaatatttgacgtcaattatttgtCGTTCAAAATAATCTCTCATT
TTGAAATCGACTAGTGGTCTAGTCGATTGTCCTGTCAGTAGAATAGTATT
TAATAGTAATAATTTtgcaatttctttgaaaatggaATGGTCTGATCAAG
TTCAACGTTTTCAGTGCCATtcattgaataaaaattcattttcttccTCT
GTTTGGATTCTATACGAAGATGCAGGAAGAAGATATTCAAGAAGGTCAGC
TTTTGGACATTGTGTTTTTATTGCTGACCAAGTCTTCAAAAACACTTCCA
ACCAACAACGTCATGTCTTTGGAGGTGACACAACACGTGGATCAACGAGT
TCCTTCAAAGCATTGGCAAACAAGAACAaatttgggtttgtttctgatgA
ATCTTCCGTTTCCTTCAGGAACCGCTCATTGATTACAGCTGCATGCGGGG
AAAGCATCGTTCCATCATTGCCATTACACGAAAGGCGATACAGTCAACCT
TCTGACGGAATTGATGAGTTGACTTCCGCCTTTCAACGTCTTTCAGTAAA
CGGCTCCCCGCCCATTGATCCGCCCACAGCACCCATCGTGCAAACAGCAG
CACCCATTGATCCGCCCACAGCACCCATCGTGCAAGCAGCAGCACCCATT
GAGCCGCCCGCAGCACTTATCGCNTACAGTGGACTTTGGTTCTTGAGAAG
CATTTGGACGCAGTAATTGCATCACTATGACTTGAGAATCCAAATGTGAA
CACAACGTTGAAACGTGTTGCCATCGACATACCTTGTCTGATGTTACCAT
GAAATGTGTGTCGTGGAATATCATTGCCTTTCATCATCCCGATGGTCCGA
CGCATTCGAGACTCTGACATCCACTAATCTCATCCAAAGATAATCGAGAG
ATAGTGTCTTCAAATATAGTTTACCTATCATAAAGATGACGGAGACAACA
ACCTAAATGAAGAAAAGATTCAAAACATGTCAAGTTTAACCCAATCTTTA
ATTTGATGTTGTGGATGATAACTGGATTTGTCTTCAAAGGTAAGAATCCA
AAATTCGGGTGTTTTACTATCAGTTTTCTCTTTATATAGAATGTGTAGCC
TGGATGTGAATCTATTGTCCAACTGACTAGGATTTTCTTTAAGTTTATTC
ACTTCGAGGCCAAGCAAAACCAAACATAATTTCTGAGTCCTGATTTTGCT
CAGGGTCAGGGGGTTTCAAATTATGAATACTAGACAACAtcataaaatga
cgtcacagtaTCTCtctaaatattaaaatatttgacgtcaattatttgtC
GTTCAAAATAATCTCTCATTTTGAAATCGACTAGTGGTCTAGTCGATTGT
CCTGTCAGTAGAATAGTATTTAATAGTAATAATTTtgcaatttctttgaa
aatggaATGGTCTGATCAAGTTCAACGTTTTCAGTGCCATtcattgaata
aaaattcattttcttcatctGTTTGGATTCTGTACGAAGATGCAGGAAGA
AGATATTCAAGAAGGTCAGCTTTTGGACATTGTGTCTTTATTGCTGACCA
AGTCTTCAAAAATACTTCCAACCAACAACGTCATGTCTTTGGAGGTGACA
CAACACGTGGATCAACGAGTTCCTTCAAAGCATTGGCAAACAAGAACAAA
TTTGGGTTTATTTCTGATGAATCTTCCGTTTCCTTCAGGAACCGCTCATT
GATTACAGCTGCATGCGGGGAAAGCATCGTTCCATCATTGCCACTACACG
AAAGGCGATACAGTCAACCTTCAGACGGAATTGATGAGTTGACTTCCGCC
TTTCAACGTCTTTCAGTAAACGGCTCCCCGCCCATTGATCCGCCCACAGC
ACCCATCGTGCAAACAGCAGCACCCATTGATCCGCCCACAGCACCCATCG
TGCAAGCAGCAGCACCCATTGAGCCGCCCGCAGCACTTATCGCGCAATCC
ACAACACCAGTTGAAAATTCATTAACAGCTAATGAGATAACCACAGCATT
CTCTTCAACTATAAGTGACCACACTACCACAATCACCACCGGACACGCTT
TACCCGACTTCGAATCCACCGACCTCATTGATGCTCTTGAACAGGAATCA
GCTGAAGCGATGGGCGGCACCCACGGTGGCGGTCAACCTCTAGTGGCGGG
TGCAATCACAAATGGGTTCTCCTCTAATGAGGAGTACTATCAATTTCTTC
AGCTCATGCTGACTGCTGTCAATCAGGTGAGACATCCATTACAACAGTTg
aaatttcctttaaaagtccTCTGGATTCAACCTGGAAAACGTGCAGCGTT
TTTGACATTccgtgtttttttatatttagatACCGGCAGGTGCTCAAAAT
TGAGGGAAACTCAATTATAAATCTTTTTCGACAAAATACTCccgaaaata
tcttttttaaccCGATTCTTTTCCCATATTTTCTCTTGTAGGGTATTGAA
TTTAATCTTGTTTAAAATGATTCATTTTTCAGCTGCAACAAGAACTCTTG
ATGGAAGAGCGTGCTGAACAGGCTGCAAGAGACGCACGGGCCACACGGGC
TCTTCGTGATCTTGCTGCGAACGAAAACCGCGCTCAACCCATTCGACACG
CTCGACGAAGAAGACGTCGCGAAGAAATGGAGGGCCTCGAGAATGATCCT
AACGCCGCTAAACGGCGCCGAAGACTTTAAGTCTTTAAACAAAATGCTTC
GAAGATACCCTCACGCACTCACTCCACCTTTCAAACCAACAATCTATTTT
CTTAACAAACCCAACGTACATCCATCGTCCACTTCCCAATGCAATAATCC
TCTTCTTGAGGCTAAATAATAAGTAACcggagaagaaagaagaaaatcca
ATTCCATACCGAACGAACGAAATTCCAGGAAAACACAACAGTTGACTTCA
ATAAACTAACTTAAATCACGTGACTTCATCTCACCGATATGGTCAGAGCA
AAACCTTCCCATCGAAGCtaaaaatatatcatttataATATATCAATCAT
TTCTATTAATTTGTTCAGTTTTTGCATGATAAGTTTGAACAGTGAAATCC
CTATTATCCTTCATCAGA Coding sequence (CDS) from alignment at scaffold_476:192443..196110+ >TCONS_00067810 ID=TCONS_00067810|Name=TCONS_00067810|organism=Clytia hemisphaerica|type=CDS|length=2907bp|location=Sequence derived from alignment at scaffold_476:192443..196110+ (Clytia hemisphaerica)
ATGTTGTGGATGATAACTGGATTTGTCTTCAAAGATGCAGGAAGAAGATA
TTCAAGAAGGTCAGCTTTTGGACATTGTGTCTTTATTGCTGACCAAGTCT
TCAAAAATACTTCCAACCAACAACGTCATGTCTTTGGAGGTGACACAACA
CGTGGATCAACGAGTTCCTTCAAAGCATTGGCAAACAAGAACAAATTTGG
GTTTATTTCTGATGAATCTTCCGTTTCCTTCAGGAACCGCTCATTGATTA
CAGCTGCATGCGGGGAAAGCATCGTTCCATCATTGCCACTACACGAAAGG
CGATACAGTCAACCTTCAGACGGAATTGATGAGTTGACTTCCGCCTTTCA
ACGTCTTTCAGTAAACGGCTCCCCGCCCATTGATCCGCCCACAGCACCCA
TCGTGCAAACAGCAGCACCCATTGATCCGCCCACAGCACCCATCGTGCAA
GCAGCAGCACCCATTGAGCCGCCCGCAGCACTTATCGCGCAATCCACAAC
ACCAGTTGAAAATTCATTAACAGCTAATGAGATAACCACAGCATTCTCTT
CAACTATAAGTGACCACACTACCACAATCACCACCGGACACGCTTTACCC
GACTTCGAATCCACCGACCTCATTGATGCTCTTGAACAGGAATCAGCTGA
AGCGATGGGCGGCACCCACGGTGGCGGTCAACCTCTAGTGGCGGGTGCAA
TCACAAATGGGTTCTCCTCTAATGAGGAGTACTATCAATTTCTTCAGCTC
ATGCTGACTGCTGTCAATCAGCTGCAACAAGAACTCTTGATGGAAGAGCG
TGCTGAACAGGCTGCAAGAGACGCACGGGCCACACGGGCTCTTCGTGATC
TTGCTGCGAACGAAAACCGCGCTCAACCCATTCGACACGCTCGACGAAGA
AGACGTCGCGAAGAAATGGAGGGCCTCGAGAATGATCCTAACGCCGCTAA
ACGGCGCCGAAGACTTTAAATGTTGTGGATGATAACTGGATTTGTCTTCA
AAGATGCAGGAAGAAGATATTCAAGAAGGTCAGCTTTTGGACATTGTGTC
TTTATTGCTGACCAAGTCTTCAAAAATACTTCCAACCAACAACGTCATGT
CTTTGGAGGTGACACAACACGTGGATCAACGAGTTCCTTCAAAGCATTGG
CAAACAAGAACAAATTTGGGTTTATTTCTGATGAATCTTCCGTTTCCTTC
AGGAACCGCTCATTGATTACAGCTGCATGCGGGGAAAGCATCGTTCCATC
ATTGCCACTACACGAAAGGCGATACAGTCAACCTTCAGACGGAATTGATG
AGTTGACTTCCGCCTTTCAACGTCTTTCAGTAAACGGCTCCCCGCCCATT
GATCCGCCCACAGCACCCATCGTGCAAACAGCAGCACCCATTGATCCGCC
CACAGCACCCATCGTGCAAGCAGCAGCACCCATTGAGCCGCCCGCAGCAC
TTATCGCGCAATCCACAACACCAGTTGAAAATTCATTAACAGCTAATGAG
ATAACCACAGCATTCTCTTCAACTATAAGTGACCACACTACCACAATCAC
CACCGGACACGCTTTACCCGACTTCGAATCCACCGACCTCATTGATGCTC
TTGAACAGGAATCAGCTGAAGCGATGGGCGGCACCCACGGTGGCGGTCAA
CCTCTAGTGGCGGGTGCAATCACAAATGGGTTCTCCTCTAATGAGGAGTA
CTATCAATTTCTTCAGCTCATGCTGACTGCTGTCAATCAGCTGCAACAAG
AACTCTTGATGGAAGAGCGTGCTGAACAGGCTGCAAGAGACGCACGGGCC
ACACGGGCTCTTCGTGATCTTGCTGCGAACGAAAACCGCGCTCAACCCAT
TCGACACGCTCGACGAAGAAGACGTCGCGAAGAAATGGAGGGCCTCGAGA
ATGATCCTAACGCCGCTAAACGGCGCCGAAGACTTTAAATGTTGTGGATG
ATAACTGGATTTGTCTTCAAAGATGCAGGAAGAAGATATTCAAGAAGGTC
AGCTTTTGGACATTGTGTCTTTATTGCTGACCAAGTCTTCAAAAATACTT
CCAACCAACAACGTCATGTCTTTGGAGGTGACACAACACGTGGATCAACG
AGTTCCTTCAAAGCATTGGCAAACAAGAACAAATTTGGGTTTATTTCTGA
TGAATCTTCCGTTTCCTTCAGGAACCGCTCATTGATTACAGCTGCATGCG
GGGAAAGCATCGTTCCATCATTGCCACTACACGAAAGGCGATACAGTCAA
CCTTCAGACGGAATTGATGAGTTGACTTCCGCCTTTCAACGTCTTTCAGT
AAACGGCTCCCCGCCCATTGATCCGCCCACAGCACCCATCGTGCAAACAG
CAGCACCCATTGATCCGCCCACAGCACCCATCGTGCAAGCAGCAGCACCC
ATTGAGCCGCCCGCAGCACTTATCGCGCAATCCACAACACCAGTTGAAAA
TTCATTAACAGCTAATGAGATAACCACAGCATTCTCTTCAACTATAAGTG
ACCACACTACCACAATCACCACCGGACACGCTTTACCCGACTTCGAATCC
ACCGACCTCATTGATGCTCTTGAACAGGAATCAGCTGAAGCGATGGGCGG
CACCCACGGTGGCGGTCAACCTCTAGTGGCGGGTGCAATCACAAATGGGT
TCTCCTCTAATGAGGAGTACTATCAATTTCTTCAGCTCATGCTGACTGCT
GTCAATCAGCTGCAACAAGAACTCTTGATGGAAGAGCGTGCTGAACAGGC
TGCAAGAGACGCACGGGCCACACGGGCTCTTCGTGATCTTGCTGCGAACG
AAAACCGCGCTCAACCCATTCGACACGCTCGACGAAGAAGACGTCGCGAA
GAAATGGAGGGCCTCGAGAATGATCCTAACGCCGCTAAACGGCGCCGAAG
ACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067810-exon-scaffold_476-1491911889:192443..192811 | TCONS_00067810-exon-scaffold_476-1491911889:192443..192811 | Clytia hemisphaerica | exon |
| TCONS_00067810-exon-scaffold_476-1510915933:192443..192811 | TCONS_00067810-exon-scaffold_476-1510915933:192443..192811 | Clytia hemisphaerica | exon |
| TCONS_00067810-exon-scaffold_476-1575043694:192443..192811 | TCONS_00067810-exon-scaffold_476-1575043694:192443..192811 | Clytia hemisphaerica | exon |
| TCONS_00067810-exon-scaffold_476-1491911889:193262..194081 | TCONS_00067810-exon-scaffold_476-1491911889:193262..194081 | Clytia hemisphaerica | exon |
| TCONS_00067810-exon-scaffold_476-1510915933:193262..194081 | TCONS_00067810-exon-scaffold_476-1510915933:193262..194081 | Clytia hemisphaerica | exon |
| TCONS_00067810-exon-scaffold_476-1575043694:193262..194081 | TCONS_00067810-exon-scaffold_476-1575043694:193262..194081 | Clytia hemisphaerica | exon |
| TCONS_00067810-exon-scaffold_476-1491911889:194532..195268 | TCONS_00067810-exon-scaffold_476-1491911889:194532..195268 | Clytia hemisphaerica | exon |
| TCONS_00067810-exon-scaffold_476-1510915933:194532..195268 | TCONS_00067810-exon-scaffold_476-1510915933:194532..195268 | Clytia hemisphaerica | exon |
| TCONS_00067810-exon-scaffold_476-1575043694:194532..195268 | TCONS_00067810-exon-scaffold_476-1575043694:194532..195268 | Clytia hemisphaerica | exon |
| TCONS_00067810-exon-scaffold_476-1491911889:195525..196110 | TCONS_00067810-exon-scaffold_476-1491911889:195525..196110 | Clytia hemisphaerica | exon |
| TCONS_00067810-exon-scaffold_476-1510915933:195525..196110 | TCONS_00067810-exon-scaffold_476-1510915933:195525..196110 | Clytia hemisphaerica | exon |
| TCONS_00067810-exon-scaffold_476-1575043694:195525..196110 | TCONS_00067810-exon-scaffold_476-1575043694:195525..196110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:192443..196110 + |
Blast
The following BLAST results are available for this feature:
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