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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067805 ID=TCONS_00067805|Name=TCONS_00067805|organism=Clytia hemisphaerica|type=transcript|length=1752bp
TATCGCTATCAGATTTCTtgagaatttcccttttttctgatAATATTAAA
ACCTAATTGATTGCAGTATTTTAAAAGGCCAATACAGTCGATGGAGAAGC
TGAAATGTGATTTACATCTTTTGAATGCTAGATAAGATGCGGTAACATGG
TTCATATACCTAGTGTcaccaaaaaatttcaattgttAAAGTAACTTTGA
AGGGAAGTCCTCCTCATTATTTTACATCAagagaaaaaaaggttttccaT
TGAATTACAGGTTTACAGTGGACTTTGGTTCTTGAGAAGCATTTGGACGC
AGTAATTGCATCACTATGACTTGAGAATCCAAATGTGAACACAACGTTGA
AACGTGTTGCCATCGACATACCTTGTCTGATGTTACCATGAAATGTGTGT
CGTGGAATATCATTGCCTTTCATCATCCCGATGGTCCGACGCATTCGAGA
CTCTGACATCCACTAATCTCATCCAAAGATAATCGAGAGATAGTGTCTTC
AAATATAGTTTACCTATCATAAAGATGACGGAGACAACAACCTAAATGAA
GAAAAGATTCAAAACATGTCAAGTTTAACCCAATCTTTAATTTGATGTTG
TGGATGATAACTGGATTTGTCTTCAAAGGAACCGCTCATTGATTACAGCT
GCATGCGGGGAAAGCATCGTTCCATCATTGCCACTACACGAAAGGCGATA
CAGTCAACCTTCAGACGGAATTGATGAGTTGACTTCCGCCTTTCAACGTC
TTTCAGTAAACGGCTCCCCGCCCATTGATCCGCCCACAGCACCCATCGTG
CAAACAGCAGCACCCATTGATCCGCCCACAGCACCCATCGTGCAAGCAGC
AGCACCCATTGAGCCGCCCGCAGCACTTATCGCGCAATCCACAACACCAG
TTGAAAATTCATTAACAGCTAATGAGATAACCACAGCATTCTCTTCAACT
ATAAGTGACCACACTACCACAATCACCACCGGACACGCTTTACCCGACTT
CGAATCCACCGACCTCATTGATGCTCTTGAACAGGAATCAGCTGAAGCGA
TGGGCGGCACCCACGGTGGCGGTCAACCTCTAGTGGCGGGTGCAATCACA
AATGGGTTCTCCTCTAATGAGGAGTACTATCAATTTCTTCAGCTCATGCT
GACTGCTGTCAATCAGCTGCAACAAGAACTCTTGATGGAAGAGCGTGCTG
AACAGGCTGCAAGAGACGCACGGGCCACACGGGCTCTTCGTGATCTTGCT
GCGAACGAAAACCGCGCTCAACCCATTCGACACGCTCGACGAAGAAGACG
TCGCGAAGAAATGGAGGGCCTCGAGAATGATCCTAACGCCGCTAAACGGC
GCCGAAGACTTTAAGTCTTTAAACAAAATGCTTCGAAGATACCCTCACGC
ACTCACTCCACCTTTCAAACCAACAATCTATTTTCTTAACAAACCCAACG
TACATCCATCGTCCACTTCCCAATGCAATAATCCTCTTCTTGAGGCTAAA
TAATAAGTAACcggagaagaaagaagaaaatccaATTCCATACCGAACGA
ACGAAATTCCAGGAAAACACAACAGTTGACTTCAATAAACTAACTTAAAT
CACGTGACTTCATCTCACCGATATGGTCAGAGCAAAACCTTCCCATCGAA
GCtaaaaatatatcatttataATATATCAATCATTTCTATTAATTTGTTC
AGTTTTTGCATGATAAGTTTGAACAGTGAAATCCCTATTATCCTTCATCA
GA Run BLAST on NCBI transcript from alignment at scaffold_476:192184..196110+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067805 ID=TCONS_00067805|Name=TCONS_00067805|organism=Clytia hemisphaerica|type=transcript|length=3927bp|location=Sequence derived from alignment at scaffold_476:192184..196110+ (Clytia hemisphaerica)
TATCGCTATCAGATTTCTtgagaatttcccttttttctgatAATATTAAA
ACCTAATTGATTGCAGTATTTTAAAAGGCCAATACAGTCGATGGAGAAGC
TGAAATGTGATTTACATCTTTTGAATGCTAGATAAGATGCGGTAACATGG
TTCATATACCTAGTGTcaccaaaaaatttcaattgttAAAGTAACTTTGA
AGGGAAGTCCTCCTCATTATTTTACATCAagagaaaaaaaggttttccaT
TGAATTACAGGTTTACAGTGGACTTTGGTTCTTGAGAAGCATTTGGACGC
AGTAATTGCATCACTATGACTTGAGAATCCAAATGTGAACACAACGTTGA
AACGTGTTGCCATCGACATACCTTGTCTGATGTTACCATGAAATGTGTGT
CGTGGAATATCATTGCCTTTCATCATCCCGATGGTCCGACGCATTCGAGA
CTCTGACATCCACTAATCTCATCCAAAGATAATCGAGAGATAGTGTCTTC
AAATATAGTTTACCTATCATAAAGATGACGGAGACAACAACCTAAATGAA
GAAAAGATTCAAAACATGTCAAGTTTAACCCAATCTTTAATTTGATGTTG
TGGATGATAACTGGATTTGTCTTCAAAGGTAAGAATCCAAAATTCGGGTG
TTTTACTATCAGTTTTCTCTTTATATAGAATGTGTAGCCTGGATGTGAAT
CTATTGTCCAACTGACTAGGATTTTCTTTAAGTTTATTCACTTCGAGGCC
AAGCAAAACCAAACATAATTTCTGAGTCCTGATTTTGCTCAGGGTCAGGG
GGTTTCAAATTATGAATACTAGACAACAtcataaaatgacgtcacagtaT
CTCtctaaatattaaaatatttgacgtcaattatttgtCGTTCAAAATAA
TCTCTCATTTTGAAATCGACTAGTGGTCTAGTCGATTGTCCTGTCAGTAG
AATAGTATTTAATAGTAATAATTTtgcaatttctttgaaaatggaATGGT
CTGATCAAGTTCAACGTTTTCAGTGCCATtcattgaataaaaattcattt
tcttccTCTGTTTGGATTCTATACGAAGATGCAGGAAGAAGATATTCAAG
AAGGTCAGCTTTTGGACATTGTGTTTTTATTGCTGACCAAGTCTTCAAAA
ACACTTCCAACCAACAACGTCATGTCTTTGGAGGTGACACAACACGTGGA
TCAACGAGTTCCTTCAAAGCATTGGCAAACAAGAACAaatttgggtttgt
ttctgatgAATCTTCCGTTTCCTTCAGGAACCGCTCATTGATTACAGCTG
CATGCGGGGAAAGCATCGTTCCATCATTGCCATTACACGAAAGGCGATAC
AGTCAACCTTCTGACGGAATTGATGAGTTGACTTCCGCCTTTCAACGTCT
TTCAGTAAACGGCTCCCCGCCCATTGATCCGCCCACAGCACCCATCGTGC
AAACAGCAGCACCCATTGATCCGCCCACAGCACCCATCGTGCAAGCAGCA
GCACCCATTGAGCCGCCCGCAGCACTTATCGCNTACAGTGGACTTTGGTT
CTTGAGAAGCATTTGGACGCAGTAATTGCATCACTATGACTTGAGAATCC
AAATGTGAACACAACGTTGAAACGTGTTGCCATCGACATACCTTGTCTGA
TGTTACCATGAAATGTGTGTCGTGGAATATCATTGCCTTTCATCATCCCG
ATGGTCCGACGCATTCGAGACTCTGACATCCACTAATCTCATCCAAAGAT
AATCGAGAGATAGTGTCTTCAAATATAGTTTACCTATCATAAAGATGACG
GAGACAACAACCTAAATGAAGAAAAGATTCAAAACATGTCAAGTTTAACC
CAATCTTTAATTTGATGTTGTGGATGATAACTGGATTTGTCTTCAAAGGT
AAGAATCCAAAATTCGGGTGTTTTACTATCAGTTTTCTCTTTATATAGAA
TGTGTAGCCTGGATGTGAATCTATTGTCCAACTGACTAGGATTTTCTTTA
AGTTTATTCACTTCGAGGCCAAGCAAAACCAAACATAATTTCTGAGTCCT
GATTTTGCTCAGGGTCAGGGGGTTTCAAATTATGAATACTAGACAACAtc
ataaaatgacgtcacagtaTCTCtctaaatattaaaatatttgacgtcaa
ttatttgtCGTTCAAAATAATCTCTCATTTTGAAATCGACTAGTGGTCTA
GTCGATTGTCCTGTCAGTAGAATAGTATTTAATAGTAATAATTTtgcaat
ttctttgaaaatggaATGGTCTGATCAAGTTCAACGTTTTCAGTGCCATt
cattgaataaaaattcattttcttcatctGTTTGGATTCTGTACGAAGAT
GCAGGAAGAAGATATTCAAGAAGGTCAGCTTTTGGACATTGTGTCTTTAT
TGCTGACCAAGTCTTCAAAAATACTTCCAACCAACAACGTCATGTCTTTG
GAGGTGACACAACACGTGGATCAACGAGTTCCTTCAAAGCATTGGCAAAC
AAGAACAAATTTGGGTTTATTTCTGATGAATCTTCCGTTTCCTTCAGGAA
CCGCTCATTGATTACAGCTGCATGCGGGGAAAGCATCGTTCCATCATTGC
CACTACACGAAAGGCGATACAGTCAACCTTCAGACGGAATTGATGAGTTG
ACTTCCGCCTTTCAACGTCTTTCAGTAAACGGCTCCCCGCCCATTGATCC
GCCCACAGCACCCATCGTGCAAACAGCAGCACCCATTGATCCGCCCACAG
CACCCATCGTGCAAGCAGCAGCACCCATTGAGCCGCCCGCAGCACTTATC
GCGCAATCCACAACACCAGTTGAAAATTCATTAACAGCTAATGAGATAAC
CACAGCATTCTCTTCAACTATAAGTGACCACACTACCACAATCACCACCG
GACACGCTTTACCCGACTTCGAATCCACCGACCTCATTGATGCTCTTGAA
CAGGAATCAGCTGAAGCGATGGGCGGCACCCACGGTGGCGGTCAACCTCT
AGTGGCGGGTGCAATCACAAATGGGTTCTCCTCTAATGAGGAGTACTATC
AATTTCTTCAGCTCATGCTGACTGCTGTCAATCAGGTGAGACATCCATTA
CAACAGTTgaaatttcctttaaaagtccTCTGGATTCAACCTGGAAAACG
TGCAGCGTTTTTGACATTccgtgtttttttatatttagatACCGGCAGGT
GCTCAAAATTGAGGGAAACTCAATTATAAATCTTTTTCGACAAAATACTC
ccgaaaatatcttttttaaccCGATTCTTTTCCCATATTTTCTCTTGTAG
GGTATTGAATTTAATCTTGTTTAAAATGATTCATTTTTCAGCTGCAACAA
GAACTCTTGATGGAAGAGCGTGCTGAACAGGCTGCAAGAGACGCACGGGC
CACACGGGCTCTTCGTGATCTTGCTGCGAACGAAAACCGCGCTCAACCCA
TTCGACACGCTCGACGAAGAAGACGTCGCGAAGAAATGGAGGGCCTCGAG
AATGATCCTAACGCCGCTAAACGGCGCCGAAGACTTTAAGTCTTTAAACA
AAATGCTTCGAAGATACCCTCACGCACTCACTCCACCTTTCAAACCAACA
ATCTATTTTCTTAACAAACCCAACGTACATCCATCGTCCACTTCCCAATG
CAATAATCCTCTTCTTGAGGCTAAATAATAAGTAACcggagaagaaagaa
gaaaatccaATTCCATACCGAACGAACGAAATTCCAGGAAAACACAACAG
TTGACTTCAATAAACTAACTTAAATCACGTGACTTCATCTCACCGATATG
GTCAGAGCAAAACCTTCCCATCGAAGCtaaaaatatatcatttataATAT
ATCAATCATTTCTATTAATTTGTTCAGTTTTTGCATGATAAGTTTGAACA
GTGAAATCCCTATTATCCTTCATCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067805-exon-scaffold_476-1491911889:192184..192811 | TCONS_00067805-exon-scaffold_476-1491911889:192184..192811 | Clytia hemisphaerica | exon |
| TCONS_00067805-exon-scaffold_476-1510915933:192184..192811 | TCONS_00067805-exon-scaffold_476-1510915933:192184..192811 | Clytia hemisphaerica | exon |
| TCONS_00067805-exon-scaffold_476-1575043694:192184..192811 | TCONS_00067805-exon-scaffold_476-1575043694:192184..192811 | Clytia hemisphaerica | exon |
| TCONS_00067805-exon-scaffold_476-1491911889:194731..195268 | TCONS_00067805-exon-scaffold_476-1491911889:194731..195268 | Clytia hemisphaerica | exon |
| TCONS_00067805-exon-scaffold_476-1510915933:194731..195268 | TCONS_00067805-exon-scaffold_476-1510915933:194731..195268 | Clytia hemisphaerica | exon |
| TCONS_00067805-exon-scaffold_476-1575043694:194731..195268 | TCONS_00067805-exon-scaffold_476-1575043694:194731..195268 | Clytia hemisphaerica | exon |
| TCONS_00067805-exon-scaffold_476-1491911889:195525..196110 | TCONS_00067805-exon-scaffold_476-1491911889:195525..196110 | Clytia hemisphaerica | exon |
| TCONS_00067805-exon-scaffold_476-1510915933:195525..196110 | TCONS_00067805-exon-scaffold_476-1510915933:195525..196110 | Clytia hemisphaerica | exon |
| TCONS_00067805-exon-scaffold_476-1575043694:195525..196110 | TCONS_00067805-exon-scaffold_476-1575043694:195525..196110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:192184..196110 + |
Blast
The following BLAST results are available for this feature:
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