TCONS_00067791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067791
Unique NameTCONS_00067791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067791 ID=TCONS_00067791|Name=TCONS_00067791|organism=Clytia hemisphaerica|type=transcript|length=519bp
cgaaaatcaatgattttcaatggaattttcaacagtttaatactgaaaga
taacattttaatgtaaattttagttagtacttactgttttgaagcctgaa
tTAGCGATTATTTACTGCCCTAATTGGcataagcccaaaattaggctgtg
gcagAATAAGGGCCCGCGTTAAATTAGGGCTgacgtaaaaagggccgata
aggtattcaatAGGCCTTCGCGTTCTCCAAAAACAACTATATTATGATAT
ATATTAAAAAATGAGAGAGACGTCACGGCAAACGTGTTATTGTCTATCAA
AATGTTTAAACTGTTCATGTCATTGCATATACATCAAGTAAAAATACTTT
CTACCCTTATCGtttattttcaaagtttcttaATAGAAGAAATTAGTATG
AGGATGGAAAAAAGTAGGGAGTGTTACATGGCACTCTTAAAGGTGCTTTT
TCACACAAACAATGTTGATGATAGTATAGGATACCAAAGTGGCAACCAAA
CTATGTTTTGAGTTGCATA
Run BLAST on NCBI

transcript from alignment at scaffold_475:66446..66964

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067791 ID=TCONS_00067791|Name=TCONS_00067791|organism=Clytia hemisphaerica|type=transcript|length=519bp|location=Sequence derived from alignment at scaffold_475:66446..66964 (Clytia hemisphaerica)
TATGCAACTCAAAACATAGTTTGGTTGCCACTTTGGTATCCTATACTATC
ATCAACATTGTTTGTGTGAAAAAGCACCTTTAAGAGTGCCATGTAACACT
CCCTACTTTTTTCCATCCTCATACTAATTTCTTCTATtaagaaactttga
aaataaaCGATAAGGGTAGAAAGTATTTTTACTTGATGTATATGCAATGA
CATGAACAGTTTAAACATTTTGATAGACAATAACACGTTTGCCGTGACGT
CTCTCTCATTTTTTAATATATATCATAATATAGTTGTTTTTGGAGAACGC
GAAGGCCTattgaataccttatcggccctttttacgtcAGCCCTAATTTA
ACGCGGGCCCTTATTctgccacagcctaattttgggcttatgCCAATTAG
GGCAGTAAATAATCGCTAattcaggcttcaaaacagtaagtactaactaa
aatttacattaaaatgttatctttcagtattaaactgttgaaaattccat
tgaaaatcattgattttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042337XLOC_042337Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067791-exon-scaffold_475-1491911889:66446..66964TCONS_00067791-exon-scaffold_475-1491911889:66446..66964Clytia hemisphaericaexon
TCONS_00067791-exon-scaffold_475-1510915933:66446..66964TCONS_00067791-exon-scaffold_475-1510915933:66446..66964Clytia hemisphaericaexon
TCONS_00067791-exon-scaffold_475-1575043694:66446..66964TCONS_00067791-exon-scaffold_475-1575043694:66446..66964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_475supercontigscaffold_475:66446..66964 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.343333	0.223203	0.518319	1.01419	0.154335	0.609786	0	0.137747	0.19288	0.238913	0	1.21951	0.380567	1.34376	0.0649853	0	0.429565	0	0.121657	0	0.221303	0.323831	0	0	0.860117	0.657972	0.156926	0.167476	0.127024	0.258835
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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