TCONS_00067790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067790
Unique NameTCONS_00067790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067790 ID=TCONS_00067790|Name=TCONS_00067790|organism=Clytia hemisphaerica|type=transcript|length=387bp
CAAAATCTTTGGAAATAcatatatttggactttgtatcAAATGCTGCATG
CAAGCACTCAcaccgtgaagttgggtaacttgcatcagtggctATTGAAA
CTTGCTTAGTCTTCAAATGACTGACCGATTAAatcagccaaatttcaaaa
taaatgaactacacagctccgctcacagctcttctctaccattttagaat
ctccattttaaaaatatttgctgTGAGAGTACTCGCCAACAGAATCGTGG
GTAAATGAAACAGCATGGTtggataataaaaaatcatgcaAGATCATAAA
TTTCAAGGTGGCTGGAATTCAGATGTTTCTTGATGGCTGCTGGACGTGTA
ACCTCAAATTTAATAATGATATTaaacataattatgc
Run BLAST on NCBI

transcript from alignment at scaffold_475:17805..18191

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067790 ID=TCONS_00067790|Name=TCONS_00067790|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at scaffold_475:17805..18191 (Clytia hemisphaerica)
gcataattatgtttAATATCATTATTAAATTTGAGGTTACACGTCCAGCA
GCCATCAAGAAACATCTGAATTCCAGCCACCTTGAAATTTATGATCTtgc
atgattttttattatccaACCATGCTGTTTCATTTACCCACGATTCTGTT
GGCGAGTACTCTCAcagcaaatatttttaaaatggagattctaaaatggt
agagaagagctgtgagcggagctgtgtagttcatttattttgaaatttgg
ctgatTTAATCGGTCAGTCATTTGAAGACTAAGCAAGTTTCAATagccac
tgatgcaagttacccaacttcacggtgTGAGTGCTTGCATGCAGCATTTg
atacaaagtccaaatatatgTATTTCCAAAGATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042336XLOC_042336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067790-exon-scaffold_475-1491911889:17805..18191TCONS_00067790-exon-scaffold_475-1491911889:17805..18191Clytia hemisphaericaexon
TCONS_00067790-exon-scaffold_475-1510915933:17805..18191TCONS_00067790-exon-scaffold_475-1510915933:17805..18191Clytia hemisphaericaexon
TCONS_00067790-exon-scaffold_475-1575043694:17805..18191TCONS_00067790-exon-scaffold_475-1575043694:17805..18191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_475supercontigscaffold_475:17805..18191 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.797253	1.16617	1.80538	3.53257	1.50537	1.27438	0.768746	0	0.671829	1.04021	0.807724	0.265483	0.265114	0.963632	0.113177	0.242912	0.299247	0.306719	0.513901	0	0	0	0.228529	0.415531	1.92594	0	0.546596	0.875013	0.981033	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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