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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067760 ID=TCONS_00067760|Name=TCONS_00067760|organism=Clytia hemisphaerica|type=transcript|length=2004bp
TCCACTGGAAATACTGCAATTTATTCTGCTTCTCTTACTAAAATTAACTT
TACACCTAGtctaatttttgctaaattcagcTCATTTTGAGANATTACCa
gaatatttgagaaaatattttgaaacgtTTTTGAGCCCTCTTATATCAGA
GTATGAGGAAATGGGAAAAGAAATTGATAAAATTTGTTATCTAACTATAC
ATGAGAGTTTGGTTGAAGAAGGAAAATCACAGAGGAGACCAGGGCTACAC
ACAGAATCACCTGGTATAATTTACGTTAAAAATGGAATGAAAAGTGAGAA
AATTAGAGAGCTGTGTATTGAAAAGGGTTCCGGTAGGGGTGATACAGAAA
TTCCATGGGTTGTTTGTTGGGGTGGACAATACGGTATGCATGGTGAAGTT
TTTACTCCTTCTGGGGGAATCTACATGGCATCTAATGTACCTAATTCATG
TGAAGTTTGGGATTGTCAAATTGTAGCGAATGATAAAGGAGAAGAAATTA
TTGGGAAGTTTGGAAATATTGAGCACTTGAGGGGCCTTCTGTCTGGCTCC
AAGATTATGAAATCTGATAAATTGTATTGGATAACCGATCGTACACCTCA
CGAATCTCTGCCATTGAAGAAAGGAACATACAGACAGTTTTTTAGGCTTG
TAACACAGAGAGTTTCAGTTTGGTATGAAGATCATTCAACCAAAAACCCT
AATGGTGTTGTCCCTGATCCTAAGATAACAAGAATTCTAAGAGgatcaaa
atttgatgaaggtTCTGTAGCCATTGTTGGCTAAAATAACTTTGGTTTCA
GGGATAAATATTGATAAATAGAAAGGTAGAAGTCATTTGAAAGAATTAAG
AAACTCATCTATGATTCAAAACTATAAATTTAAGTGATATATTATAAAGC
TAACTTAAGTTATATCAAATGATCAGCTCAATCTTATATACTCGATGGTA
TTCACTTTCATATGTACTTTGAATTTGCATTTCAGTTTGCAATTGACATA
TACTGAATTTTCCCACTTTTGCCGTTTTTCAAATAGAATACTTTACCAAA
GTGGGGTTAATCATATGCATTTTGCCTGGGTGTAAAACAGTTGAACAAAT
GATAAACAAAATAGTCTAATTTGCATCATTTTATAATGATTTTATAGTTT
GAatcattttataaaatttgatttcttacgtttgtatttattttcatgaa
tttaaaTCTTTTCAATAGTTTTTACAGTGTgctaaattttgcaaaatttc
atcaaaattctcACGAGAATAAAGTGTGCCAGCAAAAAGTAAATGCCTTT
TAGATACCTTGGCCTTTGATAGATACTTATTATTGTAAGGTGTGTCCCTT
GAACCTATTTTTTACGTGTCGCACATTCTCGCAGTTTTCCTTTTACACTg
cttaaaatttatttatttttgtaaaattcgCCATTATAATACCAATAATA
CACATGTAATTCTAAAGAGTTTAGAATGGAAGAGGAATACATAACTTCAG
CTATCATGCTTTAAATTTGGTCCAGAAGTTCAAAAGTTGTAAAGATTTCT
TTGAAGCACCGATGCGCGATTTAATAGTTTTCTTTGAACTTGATTTTTGT
TGTAAATAAGAATATTATGTATTTtatatttcatttaaaattgTCTGGCT
TTATTGTAAATTATTAATAGTAAGTGTATCTGGCCCATcttcaaaaaata
gaaatttattcattttcactttatttttataCCTTGAACAGGTTTACGTA
GTCAAATATAACAACATAACAATATGTTAAAAACACTAAAAGagtataaa
aatattaaaatacagTAGACAGCTTGCATTGACAGTAGGTTTTGACATCC
TGGACTTCTGACATCCTCGACTTCTGAAACAAATCATTTAGTGTTCCAAG
TGATCTTATTACCTTTGTGGTAATTTGCTTCATGCCGAACCTGATCTGAA
GTCAAAGGAGTTAAGGCAGACTTTATTTTTCGGAAAAGGAAGTTTATCCC
TTGA Run BLAST on NCBI protein sequence of TCONS_00067760-protein >TCONS_00067760-protein ID=TCONS_00067760-protein|Name=TCONS_00067760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MGKEIDKICYLTIHESLVEEGKSQRRPGLHTESPGIIYVKNGMKSEKIRE
LCIEKGSGRGDTEIPWVVCWGGQYGMHGEVFTPSGGIYMASNVPNSCEVW
DCQIVANDKGEEIIGKFGNIEHLRGLLSGSKIMKSDKLYWITDRTPHESL
PLKKGTYRQFFRLVTQRVSVWYEDHSTKNPNGVVPDPKITRILRGSKFDE
GSVAIVG Run BLAST on NCBI transcript from alignment at scaffold_473:188211..190214 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067760 ID=TCONS_00067760|Name=TCONS_00067760|organism=Clytia hemisphaerica|type=transcript|length=2004bp|location=Sequence derived from alignment at scaffold_473:188211..190214 (Clytia hemisphaerica)
TCAAGGGATAAACTTCCTTTTCCGAAAAATAAAGTCTGCCTTAACTCCTT
TGACTTCAGATCAGGTTCGGCATGAAGCAAATTACCACAAAGGTAATAAG
ATCACTTGGAACACTAAATGATTTGTTTCAGAAGTCGAGGATGTCAGAAG
TCCAGGATGTCAAAACCTACTGTCAATGCAAGCTGTCTActgtattttaa
tatttttatactCTTTTAGTGTTTTTAACATATTGTTATGTTGTTATATT
TGACTACGTAAACCTGTTCAAGGtataaaaataaagtgaaaatgaataaa
tttctattttttgaagATGGGCCAGATACACTTACTATTAATAATTTACA
ATAAAGCCAGAcaattttaaatgaaatataAAATACATAATATTCTTATT
TACAACAAAAATCAAGTTCAAAGAAAACTATTAAATCGCGCATCGGTGCT
TCAAAGAAATCTTTACAACTTTTGAACTTCTGGACCAAATTTAAAGCATG
ATAGCTGAAGTTATGTATTCCTCTTCCATTCTAAACTCTTTAGAATTACA
TGTGTATTATTGGTATTATAATGGcgaattttacaaaaataaataaattt
taagcAGTGTAAAAGGAAAACTGCGAGAATGTGCGACACGTAAAAAATAG
GTTCAAGGGACACACCTTACAATAATAAGTATCTATCAAAGGCCAAGGTA
TCTAAAAGGCATTTACTTTTTGCTGGCACACTTTATTCTCGTgagaattt
tgatgaaattttgcaaaatttagcACACTGTAAAAACTATTGAAAAGAtt
taaattcatgaaaataaatacaaacgtaagaaatcaaattttataaaatg
atTCAAACTATAAAATCATTATAAAATGATGCAAATTAGACTATTTTGTT
TATCATTTGTTCAACTGTTTTACACCCAGGCAAAATGCATATGATTAACC
CCACTTTGGTAAAGTATTCTATTTGAAAAACGGCAAAAGTGGGAAAATTC
AGTATATGTCAATTGCAAACTGAAATGCAAATTCAAAGTACATATGAAAG
TGAATACCATCGAGTATATAAGATTGAGCTGATCATTTGATATAACTTAA
GTTAGCTTTATAATATATCACTTAAATTTATAGTTTTGAATCATAGATGA
GTTTCTTAATTCTTTCAAATGACTTCTACCTTTCTATTTATCAATATTTA
TCCCTGAAACCAAAGTTATTTTAGCCAACAATGGCTACAGAaccttcatc
aaattttgatcCTCTTAGAATTCTTGTTATCTTAGGATCAGGGACAACAC
CATTAGGGTTTTTGGTTGAATGATCTTCATACCAAACTGAAACTCTCTGT
GTTACAAGCCTAAAAAACTGTCTGTATGTTCCTTTCTTCAATGGCAGAGA
TTCGTGAGGTGTACGATCGGTTATCCAATACAATTTATCAGATTTCATAA
TCTTGGAGCCAGACAGAAGGCCCCTCAAGTGCTCAATATTTCCAAACTTC
CCAATAATTTCTTCTCCTTTATCATTCGCTACAATTTGACAATCCCAAAC
TTCACATGAATTAGGTACATTAGATGCCATGTAGATTCCCCCAGAAGGAG
TAAAAACTTCACCATGCATACCGTATTGTCCACCCCAACAAACAACCCAT
GGAATTTCTGTATCACCCCTACCGGAACCCTTTTCAATACACAGCTCTCT
AATTTTCTCACTTTTCATTCCATTTTTAACGTAAATTATACCAGGTGATT
CTGTGTGTAGCCCTGGTCTCCTCTGTGATTTTCCTTCTTCAACCAAACTC
TCATGTATAGTTAGATAACAAATTTTATCAATTTCTTTTCCCATTTCCTC
ATACTCTGATATAAGAGGGCTCAAAAacgtttcaaaatattttctcaaat
attctGGTAATNTCTCAAAATGAgctgaatttagcaaaaattagaCTAGG
TGTAAAGTTAATTTTAGTAAGAGAAGCAGAATAAATTGCAGTATTTCCAG
TGGA Coding sequence (CDS) from alignment at scaffold_473:188211..190214 >TCONS_00067760 ID=TCONS_00067760|Name=TCONS_00067760|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_473:188211..190214 (Clytia hemisphaerica)
TTAGCCAACAATGGCTACAGAaccttcatcaaattttgatcCTCTTAGAA
TTCTTGTTATCTTAGGATCAGGGACAACACCATTAGGGTTTTTGGTTGAA
TGATCTTCATACCAAACTGAAACTCTCTGTGTTACAAGCCTAAAAAACTG
TCTGTATGTTCCTTTCTTCAATGGCAGAGATTCGTGAGGTGTACGATCGG
TTATCCAATACAATTTATCAGATTTCATAATCTTGGAGCCAGACAGAAGG
CCCCTCAAGTGCTCAATATTTCCAAACTTCCCAATAATTTCTTCTCCTTT
ATCATTCGCTACAATTTGACAATCCCAAACTTCACATGAATTAGGTACAT
TAGATGCCATGTAGATTCCCCCAGAAGGAGTAAAAACTTCACCATGCATA
CCGTATTGTCCACCCCAACAAACAACCCATGGAATTTCTGTATCACCCCT
ACCGGAACCCTTTTCAATACACAGCTCTCTAATTTTCTCACTTTTCATTC
CATTTTTAACGTAAATTATACCAGGTGATTCTGTGTGTAGCCCTGGTCTC
CTCTGTGATTTTCCTTCTTCAACCAAACTCTCATGTATAGTTAGATAACA
AATTTTATCAATTTCTTTTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067760-exon-scaffold_473-1491911889:188211..190214 | TCONS_00067760-exon-scaffold_473-1491911889:188211..190214 | Clytia hemisphaerica | exon |
| TCONS_00067760-exon-scaffold_473-1510915933:188211..190214 | TCONS_00067760-exon-scaffold_473-1510915933:188211..190214 | Clytia hemisphaerica | exon |
| TCONS_00067760-exon-scaffold_473-1575043694:188211..190214 | TCONS_00067760-exon-scaffold_473-1575043694:188211..190214 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_473 | supercontig | scaffold_473:188211..190214 . |
Blast
The following BLAST results are available for this feature:
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