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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067752 ID=TCONS_00067752|Name=TCONS_00067752|organism=Clytia hemisphaerica|type=transcript|length=1416bp
AAACAAGACAGATTTGCAAAGGAGAGCTGTTCTTTACCATAATGTCATTA
ACAAAACATTCGATCTTGCCAAAGAACAGTACTCGACATTTGACGACCTT
GAATATCTAAGTTTTGATGTTTGTCAAGATCGTGAACTGCTGCTTCGTCT
AACAACCACGTTTATATTGGATCTTGAAATGAATATACATTTTAATGCTT
CTTTAATCAAATTCAACGATAGAGGAGTCATTAATTGGAGACATCTTAAT
ATTAGAAATAAAAACacaatctctttttttttggtttacATGGATAAAGA
AATGACCgaattattttcaaagttgaTAAGGGCAAGACAATTTTCAAATG
TcctaattttaaatcaaaacagTAGAATAGGTAGTTTCGAGGATATAAGC
CTGAAGAGcgttatttttactttagttgACTTTTTAGAGCTAGAATCGAA
CATTTTTGCTAAGCACATGGAAATCTTTAGATGGAAGCGTTTCGGGTTAT
TCCTTTTAAAAGGATCAAAACGAGATTCCAGTGAGTATTACTTAAACATG
CATCGAAGGTTCATTGACACGATTAGCCAACAAGACCTTTTTGATACTTG
CTATTTTACGGATACTATTGACATTCAAAATTCCACCAACTTTACCAGAG
CTGTCGACATTTTACATCAAGATTTATCGCACAATGTTTTGGTATTGTTT
GGCAATCCTCATGATCAAATGAAGTTTGTGAAAACTGTCAACattttttc
ttatacaaatTTTATCTGGTTTACTCACGACCTTACAGACTCTATGATAA
AATCAGCTTTCCCATTTCGTGATCGAGAAGAAATCATGATTTTCAACTAC
CAAACCAAAATGCGTCAATTAATCGTAAAAAATCGAGAAGAATTCAAAAA
GCAAATGTCTCTACCTGAAGAATActttgaacaaaataaaacagtGGTCG
AAACAGCATTTACCTATTTTGATCGGGTCTTTGAAATGATTGATGAAAAG
GGCACAGCAAGCATAAAACCTATTTTAAAATTCCCCCTTTCAAACGTTGG
CGTggtttttattagaaagagaTCACGTTCGTTCATATATACAATGCGCT
TCGTCGACGAGGAAGTGTTGGCCTACGAACTGAAGGAAATAAATATTATA
TTATTAagagaatttttcattgaaactaCATGTGAATCATATCAGTGTTA
TCCAGGCTGGGAACAAAGCAGAGGACAACGTTTGAAGCAATTCACGAAAT
GGAATTCCGAGTATGGTTTTACTTGTAAACAATGtcaacaaaatttcatc
aaattcaACAGAGgaaatgttgaaaaatgtcagaaatgtCCTCGttatta
tctttccaacaaaaatTACACTGAATGTTTTGACCCGTACCGTAAGGAAT
TTCTGGTAAAAAGCAC Run BLAST on NCBI protein sequence of TCONS_00067752-protein >TCONS_00067752-protein ID=TCONS_00067752-protein|Name=TCONS_00067752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
NKTDLQRRAVLYHNVINKTFDLAKEQYSTFDDLEYLSFDVCQDRELLLRL
TTTFILDLEMNIHFNASLIKFNDRGVINWRHLNIRNKNTISFFLVYMDKE
MTELFSKLIRARQFSNVLILNQNSRIGSFEDISLKSVIFTLVDFLELESN
IFAKHMEIFRWKRFGLFLLKGSKRDSSEYYLNMHRRFIDTISQQDLFDTC
YFTDTIDIQNSTNFTRAVDILHQDLSHNVLVLFGNPHDQMKFVKTVNIFS
YTNFIWFTHDLTDSMIKSAFPFRDREEIMIFNYQTKMRQLIVKNREEFKK
QMSLPEEYFEQNKTVVETAFTYFDRVFEMIDEKGTASIKPILKFPLSNVG
VVFIRKRSRSFIYTMRFVDEEVLAYELKEINIILLREFFIETTCESYQCY
PGWEQSRGQRLKQFTKWNSEYGFTCKQCQQNFIKFNRGNVEKCQKCPRYY
LSNKNYTECFDPYRKEFLVKS Run BLAST on NCBI transcript from alignment at scaffold_473:127566..128981 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067752 ID=TCONS_00067752|Name=TCONS_00067752|organism=Clytia hemisphaerica|type=transcript|length=1416bp|location=Sequence derived from alignment at scaffold_473:127566..128981 (Clytia hemisphaerica)
GTGCTTTTTACCAGAAATTCCTTACGGTACGGGTCAAAACATTCAGTGTA
atttttgttggaaagataataaCGAGGacatttctgacatttttcaacat
ttcCTCTGTtgaatttgatgaaattttgttgaCATTGTTTACAAGTAAAA
CCATACTCGGAATTCCATTTCGTGAATTGCTTCAAACGTTGTCCTCTGCT
TTGTTCCCAGCCTGGATAACACTGATATGATTCACATGtagtttcaatga
aaaattctctTAATAATATAATATTTATTTCCTTCAGTTCGTAGGCCAAC
ACTTCCTCGTCGACGAAGCGCATTGTATATATGAACGAACGTGAtctctt
tctaataaaaaccACGCCAACGTTTGAAAGGGGGAATTTTAAAATAGGTT
TTATGCTTGCTGTGCCCTTTTCATCAATCATTTCAAAGACCCGATCAAAA
TAGGTAAATGCTGTTTCGACCactgttttattttgttcaaagTATTCTTC
AGGTAGAGACATTTGCTTTTTGAATTCTTCTCGATTTTTTACGATTAATT
GACGCATTTTGGTTTGGTAGTTGAAAATCATGATTTCTTCTCGATCACGA
AATGGGAAAGCTGATTTTATCATAGAGTCTGTAAGGTCGTGAGTAAACCA
GATAAAatttgtataagaaaaaatGTTGACAGTTTTCACAAACTTCATTT
GATCATGAGGATTGCCAAACAATACCAAAACATTGTGCGATAAATCTTGA
TGTAAAATGTCGACAGCTCTGGTAAAGTTGGTGGAATTTTGAATGTCAAT
AGTATCCGTAAAATAGCAAGTATCAAAAAGGTCTTGTTGGCTAATCGTGT
CAATGAACCTTCGATGCATGTTTAAGTAATACTCACTGGAATCTCGTTTT
GATCCTTTTAAAAGGAATAACCCGAAACGCTTCCATCTAAAGATTTCCAT
GTGCTTAGCAAAAATGTTCGATTCTAGCTCTAAAAAGTcaactaaagtaa
aaataacgCTCTTCAGGCTTATATCCTCGAAACTACCTATTCTActgttt
tgatttaaaattaggACATTTGAAAATTGTCTTGCCCTTAtcaactttga
aaataattcGGTCATTTCTTTATCCATgtaaaccaaaaaaaaagagattg
tGTTTTTATTTCTAATATTAAGATGTCTCCAATTAATGACTCCTCTATCG
TTGAATTTGATTAAAGAAGCATTAAAATGTATATTCATTTCAAGATCCAA
TATAAACGTGGTTGTTAGACGAAGCAGCAGTTCACGATCTTGACAAACAT
CAAAACTTAGATATTCAAGGTCGTCAAATGTCGAGTACTGTTCTTTGGCA
AGATCGAATGTTTTGTTAATGACATTATGGTAAAGAACAGCTCTCCTTTG
CAAATCTGTCTTGTTT Coding sequence (CDS) from alignment at scaffold_473:127566..128981 >TCONS_00067752 ID=TCONS_00067752|Name=TCONS_00067752|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at scaffold_473:127566..128981 (Clytia hemisphaerica)
GCTTTTTACCAGAAATTCCTTACGGTACGGGTCAAAACATTCAGTGTAat
ttttgttggaaagataataaCGAGGacatttctgacatttttcaacattt
cCTCTGTtgaatttgatgaaattttgttgaCATTGTTTACAAGTAAAACC
ATACTCGGAATTCCATTTCGTGAATTGCTTCAAACGTTGTCCTCTGCTTT
GTTCCCAGCCTGGATAACACTGATATGATTCACATGtagtttcaatgaaa
aattctctTAATAATATAATATTTATTTCCTTCAGTTCGTAGGCCAACAC
TTCCTCGTCGACGAAGCGCATTGTATATATGAACGAACGTGAtctctttc
taataaaaaccACGCCAACGTTTGAAAGGGGGAATTTTAAAATAGGTTTT
ATGCTTGCTGTGCCCTTTTCATCAATCATTTCAAAGACCCGATCAAAATA
GGTAAATGCTGTTTCGACCactgttttattttgttcaaagTATTCTTCAG
GTAGAGACATTTGCTTTTTGAATTCTTCTCGATTTTTTACGATTAATTGA
CGCATTTTGGTTTGGTAGTTGAAAATCATGATTTCTTCTCGATCACGAAA
TGGGAAAGCTGATTTTATCATAGAGTCTGTAAGGTCGTGAGTAAACCAGA
TAAAatttgtataagaaaaaatGTTGACAGTTTTCACAAACTTCATTTGA
TCATGAGGATTGCCAAACAATACCAAAACATTGTGCGATAAATCTTGATG
TAAAATGTCGACAGCTCTGGTAAAGTTGGTGGAATTTTGAATGTCAATAG
TATCCGTAAAATAGCAAGTATCAAAAAGGTCTTGTTGGCTAATCGTGTCA
ATGAACCTTCGATGCATGTTTAAGTAATACTCACTGGAATCTCGTTTTGA
TCCTTTTAAAAGGAATAACCCGAAACGCTTCCATCTAAAGATTTCCATGT
GCTTAGCAAAAATGTTCGATTCTAGCTCTAAAAAGTcaactaaagtaaaa
ataacgCTCTTCAGGCTTATATCCTCGAAACTACCTATTCTActgttttg
atttaaaattaggACATTTGAAAATTGTCTTGCCCTTAtcaactttgaaa
ataattcGGTCATTTCTTTATCCATgtaaaccaaaaaaaaagagattgtG
TTTTTATTTCTAATATTAAGATGTCTCCAATTAATGACTCCTCTATCGTT
GAATTTGATTAAAGAAGCATTAAAATGTATATTCATTTCAAGATCCAATA
TAAACGTGGTTGTTAGACGAAGCAGCAGTTCACGATCTTGACAAACATCA
AAACTTAGATATTCAAGGTCGTCAAATGTCGAGTACTGTTCTTTGGCAAG
ATCGAATGTTTTGTTAATGACATTATGGTAAAGAACAGCTCTCCTTTGCA
AATCTGTCTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067752-exon-scaffold_473-1491911889:127566..128981 | TCONS_00067752-exon-scaffold_473-1491911889:127566..128981 | Clytia hemisphaerica | exon |
| TCONS_00067752-exon-scaffold_473-1510915933:127566..128981 | TCONS_00067752-exon-scaffold_473-1510915933:127566..128981 | Clytia hemisphaerica | exon |
| TCONS_00067752-exon-scaffold_473-1575043694:127566..128981 | TCONS_00067752-exon-scaffold_473-1575043694:127566..128981 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_473 | supercontig | scaffold_473:127566..128981 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR028082 | Peripla_BP_I |
Blast
The following BLAST results are available for this feature:
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