TCONS_00067749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067749
Unique NameTCONS_00067749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067749 ID=TCONS_00067749|Name=TCONS_00067749|organism=Clytia hemisphaerica|type=transcript|length=516bp
GGACAATTTATCAgggtaaaaattagaaaactttaaattttcgtcttttt
ttagccatttttacCACTTGTTAGGGTATCCCAGGATATAAATTCACCTT
CTCATTATCGAATTGATTTCAAAGTGTTTTTAGTCCTAACAACACTCTAT
TCGCAGTGCTGTATTTCCTGTCGTACATTCTGACGTATGTGGCCGCCAAG
TTTATTTCATTATCCGGCTTTACACCGGGTATCCACCGGGACGGATCTGA
CCGGGTCACTTATCAGTAAATCAAAAAGTGGCAAGTGGCTTTGGCTACAG
ATTGTATTTTTCATAAATGATTTTTTGGTTCTTCTTAGTCAAGTTTTCAA
GTAGATGAAGTAATGGTACTGAGTTCGAGTTACAACAGTGTCTATACAGG
TTACAACCACGTCCCGCCCCATGTACACCAGGCTTTATTTGCGTTACTGT
TGATGGAAGCCAGTAGACTGTTCAACTAACGTTGAAATTTCCTAAGTACC
GTAGACAATCAAAGTT
Run BLAST on NCBI

transcript from alignment at scaffold_473:120267..120782

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067749 ID=TCONS_00067749|Name=TCONS_00067749|organism=Clytia hemisphaerica|type=transcript|length=516bp|location=Sequence derived from alignment at scaffold_473:120267..120782 (Clytia hemisphaerica)
AACTTTGATTGTCTACGGTACTTAGGAAATTTCAACGTTAGTTGAACAGT
CTACTGGCTTCCATCAACAGTAACGCAAATAAAGCCTGGTGTACATGGGG
CGGGACGTGGTTGTAACCTGTATAGACACTGTTGTAACTCGAACTCAGTA
CCATTACTTCATCTACTTGAAAACTTGACTAAGAAGAACCAAAAAATCAT
TTATGAAAAATACAATCTGTAGCCAAAGCCACTTGCCACTTTTTGATTTA
CTGATAAGTGACCCGGTCAGATCCGTCCCGGTGGATACCCGGTGTAAAGC
CGGATAATGAAATAAACTTGGCGGCCACATACGTCAGAATGTACGACAGG
AAATACAGCACTGCGAATAGAGTGTTGTTAGGACTAAAAACACTTTGAAA
TCAATTCGATAATGAGAAGGTGAATTTATATCCTGGGATACCCTAACAAG
TGgtaaaaatggctaaaaaaagacgaaaatttaaagttttctaattttta
cccTGATAAATTGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042307XLOC_042307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067749-exon-scaffold_473-1491911889:120267..120782TCONS_00067749-exon-scaffold_473-1491911889:120267..120782Clytia hemisphaericaexon
TCONS_00067749-exon-scaffold_473-1510915933:120267..120782TCONS_00067749-exon-scaffold_473-1510915933:120267..120782Clytia hemisphaericaexon
TCONS_00067749-exon-scaffold_473-1575043694:120267..120782TCONS_00067749-exon-scaffold_473-1575043694:120267..120782Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_473supercontigscaffold_473:120267..120782 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.445722	0.278186	0.38953	0.361872	1.40497	0.307856	0.538	0.319267	0.524962	0.140841	0.260257	0.711348	0	0.128549	0.335198	0.163498	0.397506	0.120463	2.23334	0.996602	0.158459	0.169112	0.128266	0.261365
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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