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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067746 ID=TCONS_00067746|Name=TCONS_00067746|organism=Clytia hemisphaerica|type=transcript|length=2288bp
tttcaggagaaaatataacaaaaatatttgagacCAGTCTAAAGATAACT
GATTTatcgaaaataataaaatgatgaAAGAATTCACAGCTAGTATGTCT
GTCCCAGCAATCAGTTTGAACgataatgaagaagaaaacgcaAATGAAAG
AGGAAGAACTGAACGTAGTGAAAGCTTCAAAGAGATGATGAGACATAGTA
TGCCATCGGTTGCTCGTAACGCATCGCCGAAACCTCATCGCAAAcatcat
catcaccatcatcaCCATCGGCATCATAAATCCAAATCGCCGTCATCGTC
ACGACAAGATTTGACAAGTCAAGACGATGCTTTCTCAAACGACGTTAAAT
CCTCATTTTTATCCATTGGAAATCAAGCAGCTCGACTTCGAAGCAGCAGT
GATAGCTCCATTCATGGAGTCGAGCATCGTTTTGGTGATCATAGATCCTC
AGAAGATTCGCCACTTCTTCGTAGAGCAATCTATGGGCGACAGAAGAGTA
AATACGATGACGATCACGACGTCGACAATGTTGGAGTAATGTTAAGTTTC
CCAAACATCGGTAATGAGGTTGATGATACTCATGAAGAGGATTTTGATCA
AGAAACAACAACAATCTCTAGAGATATTATTGGTGACTCTGTTGGAAAAC
ATCATGATATCAATAGTGGTGAAACGTTAACTAAACGCCGGGATGAGTTG
GTTTCACAAGTGCAACGAAATGAAAATAGCCGCTCAAAGAAACGTGTATT
GAAAATGATTGATCAATTGCTGGAGCAATGTACTGATAATTTTCATCAAG
TTGAAAGAGACATTGATTTCCAATTCGCAAGACTTTACGTTGCACTTGAA
AACAGGAAAAAGGAGTTAGTCGAGGAAGCTAAACAGGCTCGTGATCAAAA
GATTGAATCTTTAAAAGAAGCAAAGAGAACCTGTTTAACCCAGGGGTCTA
AGGCTACTTTATCCGTCCAATCGTCTTTTAGCTCTGACAATGACTCAGAC
AATGGTGAATGTTCTCCGAGGCGTGATTCAGGTGGTGAACAGCAAGATAG
CATTTGTCTGCAGCAAAATGGTATCTTAGAGCCTTGGAAATCATTTGGCA
AACAGGAAAAAGATCAAATGAAGGCTGATCTAAACAAAGTTGTGGATTCC
CTTAGCAATGGTAATAGCTTGATGTTAGGAACTCTTGAAGAAGGGAAcac
ttgttttgatttcaatgAGGAGTCTATTGAGATTCTTTCAAACATTGGTA
AACTCAAAGACTCTTTATCTTCAGCTCAATTTTCCTTTACAAAAGGCTTA
CATTATGGAATTGCACTGGCTGGCGAAGCAGTACACTTTGAAGTACATAC
AAGGAGTATCAATAACGAGGTTTCATTCAATTCAATGGATGATATCAAAT
GCCAGATCTACAGTACTTCTGGAGAATGTATAGAAGTGAGCCAGCAAGTT
TCTCTTAGGCGTTCGTTGAGTAACAGTCGAGTTGTCTCACACAATAATAA
AAGCTCTTTAAATCGGTTTTATTCGTACGACTTTACCGCTCCTGAATCGG
GCAAGTACGAGATTCGCATCGCAATAAATGGAGTTGAAATCAAATCCAGT
CCGTTTGTTTACTCAGTTTATCCAAAAGTAAATCTAGCTTTTGATGTTAA
GTCACCTGGTGAAAGAACTGAAGTGAATCTAACTGACAAGAGTAGTGGTA
CGCTGGAATCACGTCGTAAAAACATGTCTCGACGTCAAAGCAGTGAAGAC
TCCGATTGGAGAGGTAATAACTGGATTGTGCAAAAAGGAGATAAATCAAG
CATTTTACGTTCAATTAACGACGTACCTTCTTACATCTACGCTTTACCGT
CCGTCAAAGGATTCTGCGCATGGAAGATACGCGTCACGTCGGCGTGCGAG
AGTATTGATTTATCAGTCGGGGTTGGAACACATACTGGTATCCCTGATAT
TGATGAGCATTTTTCATGTGATTTTCATATCAAACCTGATGGAAATAGAC
CTAAAGGAAATGGTGCAGGGCGTATTCAAGTACGTCGTACGTCTTCCTTT
ACCCGTGTCTCGATCACCTATGATGTCTTATTGAGCACACACGAGGGTAT
GGTCCGTGTGATTTGTGAGCAACATGAACAAGACAAAACAGTTAGGATCA
ATCCAGAACTGTTAGAACGTTTTGATTTGTTTCCGTTTATCAGCATGATA
CATAGACATGATGAATGTGGTAGACAGGTCTGTCCTAGACCACAAATAAC
ACTTTTGTAAAGTTAAGGCtccttttaatttgaaaaag Run BLAST on NCBI protein sequence of TCONS_00067746-protein >TCONS_00067746-protein ID=TCONS_00067746-protein|Name=TCONS_00067746-protein|organism=Clytia hemisphaerica|type=polypeptide|length=729bp
MMKEFTASMSVPAISLNDNEEENANERGRTERSESFKEMMRHSMPSVARN
ASPKPHRKHHHHHHHHRHHKSKSPSSSRQDLTSQDDAFSNDVKSSFLSIG
NQAARLRSSSDSSIHGVEHRFGDHRSSEDSPLLRRAIYGRQKSKYDDDHD
VDNVGVMLSFPNIGNEVDDTHEEDFDQETTTISRDIIGDSVGKHHDINSG
ETLTKRRDELVSQVQRNENSRSKKRVLKMIDQLLEQCTDNFHQVERDIDF
QFARLYVALENRKKELVEEAKQARDQKIESLKEAKRTCLTQGSKATLSVQ
SSFSSDNDSDNGECSPRRDSGGEQQDSICLQQNGILEPWKSFGKQEKDQM
KADLNKVVDSLSNGNSLMLGTLEEGNTCFDFNEESIEILSNIGKLKDSLS
SAQFSFTKGLHYGIALAGEAVHFEVHTRSINNEVSFNSMDDIKCQIYSTS
GECIEVSQQVSLRRSLSNSRVVSHNNKSSLNRFYSYDFTAPESGKYEIRI
AINGVEIKSSPFVYSVYPKVNLAFDVKSPGERTEVNLTDKSSGTLESRRK
NMSRRQSSEDSDWRGNNWIVQKGDKSSILRSINDVPSYIYALPSVKGFCA
WKIRVTSACESIDLSVGVGTHTGIPDIDEHFSCDFHIKPDGNRPKGNGAG
RIQVRRTSSFTRVSITYDVLLSTHEGMVRVICEQHEQDKTVRINPELLER
FDLFPFISMIHRHDECGRQVCPRPQITLL Run BLAST on NCBI transcript from alignment at scaffold_473:90545..92832 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067746 ID=TCONS_00067746|Name=TCONS_00067746|organism=Clytia hemisphaerica|type=transcript|length=2288bp|location=Sequence derived from alignment at scaffold_473:90545..92832 (Clytia hemisphaerica)
ctttttcaaattaaaaggaGCCTTAACTTTACAAAAGTGTTATTTGTGGT
CTAGGACAGACCTGTCTACCACATTCATCATGTCTATGTATCATGCTGAT
AAACGGAAACAAATCAAAACGTTCTAACAGTTCTGGATTGATCCTAACTG
TTTTGTCTTGTTCATGTTGCTCACAAATCACACGGACCATACCCTCGTGT
GTGCTCAATAAGACATCATAGGTGATCGAGACACGGGTAAAGGAAGACGT
ACGACGTACTTGAATACGCCCTGCACCATTTCCTTTAGGTCTATTTCCAT
CAGGTTTGATATGAAAATCACATGAAAAATGCTCATCAATATCAGGGATA
CCAGTATGTGTTCCAACCCCGACTGATAAATCAATACTCTCGCACGCCGA
CGTGACGCGTATCTTCCATGCGCAGAATCCTTTGACGGACGGTAAAGCGT
AGATGTAAGAAGGTACGTCGTTAATTGAACGTAAAATGCTTGATTTATCT
CCTTTTTGCACAATCCAGTTATTACCTCTCCAATCGGAGTCTTCACTGCT
TTGACGTCGAGACATGTTTTTACGACGTGATTCCAGCGTACCACTACTCT
TGTCAGTTAGATTCACTTCAGTTCTTTCACCAGGTGACTTAACATCAAAA
GCTAGATTTACTTTTGGATAAACTGAGTAAACAAACGGACTGGATTTGAT
TTCAACTCCATTTATTGCGATGCGAATCTCGTACTTGCCCGATTCAGGAG
CGGTAAAGTCGTACGAATAAAACCGATTTAAAGAGCTTTTATTATTGTGT
GAGACAACTCGACTGTTACTCAACGAACGCCTAAGAGAAACTTGCTGGCT
CACTTCTATACATTCTCCAGAAGTACTGTAGATCTGGCATTTGATATCAT
CCATTGAATTGAATGAAACCTCGTTATTGATACTCCTTGTATGTACTTCA
AAGTGTACTGCTTCGCCAGCCAGTGCAATTCCATAATGTAAGCCTTTTGT
AAAGGAAAATTGAGCTGAAGATAAAGAGTCTTTGAGTTTACCAATGTTTG
AAAGAATCTCAATAGACTCCTcattgaaatcaaaacaagtgTTCCCTTCT
TCAAGAGTTCCTAACATCAAGCTATTACCATTGCTAAGGGAATCCACAAC
TTTGTTTAGATCAGCCTTCATTTGATCTTTTTCCTGTTTGCCAAATGATT
TCCAAGGCTCTAAGATACCATTTTGCTGCAGACAAATGCTATCTTGCTGT
TCACCACCTGAATCACGCCTCGGAGAACATTCACCATTGTCTGAGTCATT
GTCAGAGCTAAAAGACGATTGGACGGATAAAGTAGCCTTAGACCCCTGGG
TTAAACAGGTTCTCTTTGCTTCTTTTAAAGATTCAATCTTTTGATCACGA
GCCTGTTTAGCTTCCTCGACTAACTCCTTTTTCCTGTTTTCAAGTGCAAC
GTAAAGTCTTGCGAATTGGAAATCAATGTCTCTTTCAACTTGATGAAAAT
TATCAGTACATTGCTCCAGCAATTGATCAATCATTTTCAATACACGTTTC
TTTGAGCGGCTATTTTCATTTCGTTGCACTTGTGAAACCAACTCATCCCG
GCGTTTAGTTAACGTTTCACCACTATTGATATCATGATGTTTTCCAACAG
AGTCACCAATAATATCTCTAGAGATTGTTGTTGTTTCTTGATCAAAATCC
TCTTCATGAGTATCATCAACCTCATTACCGATGTTTGGGAAACTTAACAT
TACTCCAACATTGTCGACGTCGTGATCGTCATCGTATTTACTCTTCTGTC
GCCCATAGATTGCTCTACGAAGAAGTGGCGAATCTTCTGAGGATCTATGA
TCACCAAAACGATGCTCGACTCCATGAATGGAGCTATCACTGCTGCTTCG
AAGTCGAGCTGCTTGATTTCCAATGGATAAAAATGAGGATTTAACGTCGT
TTGAGAAAGCATCGTCTTGACTTGTCAAATCTTGTCGTGACGATGACGGC
GATTTGGATTTATGATGCCGATGGtgatgatggtgatgatgatgTTTGCG
ATGAGGTTTCGGCGATGCGTTACGAGCAACCGATGGCATACTATGTCTCA
TCATCTCTTTGAAGCTTTCACTACGTTCAGTTCTTCCTCTTTCATTtgcg
ttttcttcttcattatcGTTCAAACTGATTGCTGGGACAGACATACTAGC
TGTGAATTCTTtcatcattttattattttcgatAAATCAGTTATCTTTAG
ACTGgtctcaaatatttttgttatattttctcctgaaa Coding sequence (CDS) from alignment at scaffold_473:90545..92832 >TCONS_00067746 ID=TCONS_00067746|Name=TCONS_00067746|organism=Clytia hemisphaerica|type=CDS|length=2190bp|location=Sequence derived from alignment at scaffold_473:90545..92832 (Clytia hemisphaerica)
TTACAAAAGTGTTATTTGTGGTCTAGGACAGACCTGTCTACCACATTCAT
CATGTCTATGTATCATGCTGATAAACGGAAACAAATCAAAACGTTCTAAC
AGTTCTGGATTGATCCTAACTGTTTTGTCTTGTTCATGTTGCTCACAAAT
CACACGGACCATACCCTCGTGTGTGCTCAATAAGACATCATAGGTGATCG
AGACACGGGTAAAGGAAGACGTACGACGTACTTGAATACGCCCTGCACCA
TTTCCTTTAGGTCTATTTCCATCAGGTTTGATATGAAAATCACATGAAAA
ATGCTCATCAATATCAGGGATACCAGTATGTGTTCCAACCCCGACTGATA
AATCAATACTCTCGCACGCCGACGTGACGCGTATCTTCCATGCGCAGAAT
CCTTTGACGGACGGTAAAGCGTAGATGTAAGAAGGTACGTCGTTAATTGA
ACGTAAAATGCTTGATTTATCTCCTTTTTGCACAATCCAGTTATTACCTC
TCCAATCGGAGTCTTCACTGCTTTGACGTCGAGACATGTTTTTACGACGT
GATTCCAGCGTACCACTACTCTTGTCAGTTAGATTCACTTCAGTTCTTTC
ACCAGGTGACTTAACATCAAAAGCTAGATTTACTTTTGGATAAACTGAGT
AAACAAACGGACTGGATTTGATTTCAACTCCATTTATTGCGATGCGAATC
TCGTACTTGCCCGATTCAGGAGCGGTAAAGTCGTACGAATAAAACCGATT
TAAAGAGCTTTTATTATTGTGTGAGACAACTCGACTGTTACTCAACGAAC
GCCTAAGAGAAACTTGCTGGCTCACTTCTATACATTCTCCAGAAGTACTG
TAGATCTGGCATTTGATATCATCCATTGAATTGAATGAAACCTCGTTATT
GATACTCCTTGTATGTACTTCAAAGTGTACTGCTTCGCCAGCCAGTGCAA
TTCCATAATGTAAGCCTTTTGTAAAGGAAAATTGAGCTGAAGATAAAGAG
TCTTTGAGTTTACCAATGTTTGAAAGAATCTCAATAGACTCCTcattgaa
atcaaaacaagtgTTCCCTTCTTCAAGAGTTCCTAACATCAAGCTATTAC
CATTGCTAAGGGAATCCACAACTTTGTTTAGATCAGCCTTCATTTGATCT
TTTTCCTGTTTGCCAAATGATTTCCAAGGCTCTAAGATACCATTTTGCTG
CAGACAAATGCTATCTTGCTGTTCACCACCTGAATCACGCCTCGGAGAAC
ATTCACCATTGTCTGAGTCATTGTCAGAGCTAAAAGACGATTGGACGGAT
AAAGTAGCCTTAGACCCCTGGGTTAAACAGGTTCTCTTTGCTTCTTTTAA
AGATTCAATCTTTTGATCACGAGCCTGTTTAGCTTCCTCGACTAACTCCT
TTTTCCTGTTTTCAAGTGCAACGTAAAGTCTTGCGAATTGGAAATCAATG
TCTCTTTCAACTTGATGAAAATTATCAGTACATTGCTCCAGCAATTGATC
AATCATTTTCAATACACGTTTCTTTGAGCGGCTATTTTCATTTCGTTGCA
CTTGTGAAACCAACTCATCCCGGCGTTTAGTTAACGTTTCACCACTATTG
ATATCATGATGTTTTCCAACAGAGTCACCAATAATATCTCTAGAGATTGT
TGTTGTTTCTTGATCAAAATCCTCTTCATGAGTATCATCAACCTCATTAC
CGATGTTTGGGAAACTTAACATTACTCCAACATTGTCGACGTCGTGATCG
TCATCGTATTTACTCTTCTGTCGCCCATAGATTGCTCTACGAAGAAGTGG
CGAATCTTCTGAGGATCTATGATCACCAAAACGATGCTCGACTCCATGAA
TGGAGCTATCACTGCTGCTTCGAAGTCGAGCTGCTTGATTTCCAATGGAT
AAAAATGAGGATTTAACGTCGTTTGAGAAAGCATCGTCTTGACTTGTCAA
ATCTTGTCGTGACGATGACGGCGATTTGGATTTATGATGCCGATGGtgat
gatggtgatgatgatgTTTGCGATGAGGTTTCGGCGATGCGTTACGAGCA
ACCGATGGCATACTATGTCTCATCATCTCTTTGAAGCTTTCACTACGTTC
AGTTCTTCCTCTTTCATTtgcgttttcttcttcattatcGTTCAAACTGA
TTGCTGGGACAGACATACTAGCTGTGAATTCTTtcatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067746-exon-scaffold_473-1491911889:90545..92832 | TCONS_00067746-exon-scaffold_473-1491911889:90545..92832 | Clytia hemisphaerica | exon |
| TCONS_00067746-exon-scaffold_473-1510915933:90545..92832 | TCONS_00067746-exon-scaffold_473-1510915933:90545..92832 | Clytia hemisphaerica | exon |
| TCONS_00067746-exon-scaffold_473-1575043694:90545..92832 | TCONS_00067746-exon-scaffold_473-1575043694:90545..92832 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_473 | supercontig | scaffold_473:90545..92832 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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