TCONS_00067738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067738
Unique NameTCONS_00067738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length982

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067738 ID=TCONS_00067738|Name=TCONS_00067738|organism=Clytia hemisphaerica|type=transcript|length=982bp
CTTTTGTGGCAAACCCAGTTAAAAAAAACATGACAAATAGGAGGAGATGA
TTGATGAAACCTTCTCTCTGTCATGTTGCAAAGCAGACACAATTCATTTT
GGAGAGaaagaaacaaacaaaagaatattaaaaaacaaatttgattcAAG
ACCCTTCAACATTGTAATGGCAGAATTAGATAGAAAAATGGATGAATTGA
AGTTAGAAAAAAAGAATCCAATAAACCCTGTGTTGCACACCATTTTACAA
GGTGTTGCTGATGAGAATTGTCAATTTTCTAAACTTTATGGTATGCCTCA
TGTTGTCAAGTTGATATGGGAAAAAGTTTTGGTAGCAATGCATATGCATA
TTAAATTTGGAAAGGATGAGAATTATGTGGAAACTTACAACCCACCTCCA
CCATTCATAGCCCAAACTGGCTTTCGGCTTCGATTTGATGTGAAATTCCC
TAAACCAACTGATATCAATATCAACATGATGCCTTTTGTCATggcaaaga
aatttgaaaacatGCAATTGCCAGATTATCTCAAACCATATGCTGATATG
ATTGAAACTTCGTTTTTTAACGAACTTCCCTTTTTTGACATAGAGGAATT
TGGTAAAATCGGTTATCTAACAATTCATGAGAGTTTGGTCGAGGAAGGTA
AATCTCAGCGGAGACCAGGTCTACATACTGAATCTCCTGGTTTTATTTAT
GTTAAGAATGATTTAAGTGATGAAAAGTGTGAGGAGTTATGCATTGAAAA
GGGTTCTGGTCATGACAAAATCATGGCTCTTGGTGTTTGGTGGGGAAAGC
TTGGATACAACAGTCATCATTTCCCTAATGGTGGTATTTATATGGCATCC
AATGTTGATGATTCTTGTAAAGTTTGGGATTGTCAGATTGTTGCTGACAA
TAATGGTGAGGAGTTGATTCGCAAACATGGAGATATTGAGCATTTACGAT
GTTTCTTGCCAGAATCAACACTTTTAAAATCT
Run BLAST on NCBI

transcript from alignment at scaffold_473:195234..201781-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067738 ID=TCONS_00067738|Name=TCONS_00067738|organism=Clytia hemisphaerica|type=transcript|length=6548bp|location=Sequence derived from alignment at scaffold_473:195234..201781- (Clytia hemisphaerica)
CTTTTGTGGCAAACCCAGTTAAAAAAAACATGACAAATAGGAGGAGATGA
TTGATGAAACCTTCTCTCTGTCATGTTGCAAAGCAGACACAATTCATTTT
GGAGAGGTAAGTTGTTTGTTACTGATACGGTACAAGTACAAGGTAGTCTT
ATTATAGAGAGAGGGAGGATGCATCATATTCATGTTTGTGGCTCCTGTAT
TTTCTGGTAGAAACACGTAGAAAATTAAATGGTAGATTTGTTTTCAGATT
CTAAGCCTTAAGTTTCCATTTAAAGCAAAAGTAAAGTCTATATCCCAATT
TACCTTCTCTCACCCTCATGTTTTTAAAAAAGACCTCAACCGTAAGTTGG
TCTAATGTCAACATCCCTCTTCTAATAACTAATTCCGACACCAAGTTTTC
GGTTTGTGTAAACCACAGGTCACAGGTCACAGGTTACAGGTTACAGGTTA
CAGGTCAGTGATGACAGGTTGACTCTAATCAATGTCATTGCAGAGGAAAA
TATGTTTGGAAAACACAAAGAATTATCAAAAAAATAATTCTCAAGCAATT
TCATCCATATAAAACCATTTCAAACATCAAAATTTAACCATGTGCTTTTA
TCAATCTTTCGCAGAGAAATCCAGTGGTGGGTAGACAGGGTGTGCAAAAG
TACATACTAACCAGGGGGTTTAAGCATCTGTGTACGCTTATACATAAAGG
CGGGGAGGGGTTACTCGATTTTTAACCTTTTAGTGCATACCTACTATGTA
TTTAAAAAAAGGTCAAAAGTCAGAATGTCACTAATCCTCTCCTTAAGGGA
GATTTCAATTTGTTTAAGTCTAATGAGATTTGAACTGTAGAGGTCATTAC
AAGCAAACACTGCAAAAGAAAGAGATCTGCATCACATCAGCATTACAAGC
CCTAAATACTATATCGTTTAGCAGCATGAGAAAAATGGTGTGCAACATAA
TCTAGACCTAGGGTGTAGCAGTGGGAGGCAAACACTGATAATACAGTAGC
ATTTATAATTTGTAGCTTCCACCATACCAATAAATTAAAGTCAGGCTGCT
TACTGGCAGAATCTGTTTCGTCTCAGAGAAAATCCCTCCTCGAATTAGAA
TGTCTACATGCAATATTATAGGTTTTTCGCAGTTTTTGCCCTTACAAAGA
AGTGTTGAAAAATTGAAAATCATTCTGTAAGTTACACAACAACTGCAAAA
TGCATAATTATGATTATGCATTATGCATTTTATTTTACGTATTTTATACC
TGCTGTCCACAACAAAATTATCATTCATATTAAAACCTATTCACCACCAA
TTTATTCTCATTAGTGTAAAGTAGCTCAAAAGAAGAGAAAAACAAGTGGT
TTATTTACAGAAATAATACTTAACTTTATAATGGCAGATTTGGCTGAAAA
ATTGAACGAATTAAAGTTAGAAAAAAAGAATCAAATAAACCCTGTGTTGC
ACACCATTTTACAAGGTGTTGCTGATGAGAATTGTCAATTTTCTAAANAA
ATAAACCCTGTGTTGCGCACCATTTTACAAGGTGTTGCTGATGAGAATTG
TCAATTTTCTAAACTTTATGGTATGCCTCATGTTGTCAAATTGATATGGG
AAAAGGTTTTAATAGCAATGAGCATGCATGTCAAATTTGGAAAGGATGAG
AACTATAAACAGGATTTCAACCCACCTGAACCATTCGAAGCACAAACTGG
TTTTCAAGTTCGTTTTGTAGTTGAATTCCCGAAACCAACTGATATCAATA
TCAACATGATGCCTTTTATCATGGCACAAGAATTTGAGGATACCAAATTG
CCTGACTATCTTGAACCATATTTTGAACTGATAAGCTCTTCATTATTCAA
CGAGTATGACTTTCGTAACATGGAGGAAATTGGTAAAGTTGGTTATCTAA
CAATTCATGAAAGTTTGGTCAAGGAAAGTCAATCTCAGCGAAGACCTGGT
TTACATACTGAATCTCCTGGTTATATTTATGTTAAGAATGGTTTAAGTGA
TGAAAAGTGTGAGGAGTTATGCATTGAAAAGGGTTCTGGTTATGATGAAA
TCAATCCTTTTCCTGTTTGGTGGGGAAAGCTTGGTTACACTGGTAAGCAC
TGCCCTAATGGTGGTATTTATATGGCATCCAATGTTGATGATTCTTGTGA
AGTTTGGGATTGTCAGATTGTTGCTGATAATAATGGTGAGGAGTTGATTC
GCAAACATGGAGATATTGAGCATTTACGATGTTTCTTGCCAGAATCAACA
CTTCTACCATCTAATGTTCTCTATTGGATAACTGATCGTACACCTCACGA
ATCTCTGCCATTGAAGAAAGGAACATACAGACAGTTTTTTAGGCTTGTAA
CACACAGAGTTTCAGTTTGGTATGAAGATCATTCAACCAAAAATCCTAAT
GGAGTTGTCCCTGATCCGAAGATGACTAGGATAGTGAAAGGGTCAAAATT
TGATGAGGACTATGTCACTGTTGTAGGTTAAGAAACCCCTTGGTTATCAA
CTCTTTGTGTGATTTTTGAAAGCTCAATTTGTATTTAGGGTTATCTCTAA
ATTTTTTATTGCCTAGAATAAATGAAATTTTTTTTGTATTTTATGGCTTT
TTTTTAGACCAACTATGAACTAATTGCAAGAAAATCATGCCATTTTATGG
AGTATTATGTTATGTTAATAAAGTTATGTTTAAAAAACTGGAGATTTTGA
GTAGTCAAAAAATGACAAAATTCATGCCAACTATACTGATGCGCCTTAAT
TTAAAGTCTTAACCAATGGTATAACATTTATTTTTTGCATCAAAGATTTT
GACCCAAATTTGGGGGTCGAGAGTTCCTTTTGTAATGTCAGTCTTTCGAC
TATAAAAAGTTTTGTCAGGTGTAATTTGCAAGACTTCTCTCCAAGTAATA
TTTTTTTTCTAATAAATCAATTGTGGTAATTTCCATTATTATTTCATGAA
TCCCAAGGGCCCGCAGTCCCCTACTATTTGATATTTTTATGGATTTAACA
TCTCTGAAAGCATTCTTGTTTTTGATATTTTTACGCTATTTTTTTTTACT
ATAATCAAAACTTCTTCTCAAACTCTGTCAGTCTTGAACAGATATATAGA
TTTCTAAAACAAACGTTCAATTATCAAAAATCGACTAAATTTTTGCTTAC
AATTCTGTAGCATATAAAAATACTAAAAATCGTTTTTGAGCTCGGCAAAT
ATTCTTCTAAAAAACTTTTGACAGATATAACCTAAATCTCTTTGTGATAC
AGACATCACTGCATTCAAGCTTTTATAATTGTTTACTTTTTTTGCTTTTA
TATGAATATAATTATTTATACTGTATTTTATTAGAAATCTTTTTGTAAAG
AAAATTTTATGACCTACCTGGAGGTCCTTTAATTTGACCGTTGTCCGTCT
GTTCGTTTGTCTGTTATAAGCTTACCTCAGGATTGCCTCATTAGTTTGTT
TTTATTTTTTGTACAGTGATGCAATGCCTTAAATGTCACGGAGCCCAATT
TTTGAGAAAATAAATTTGGGCAAATTTGGGCCAAAAACTGCCTAAAGATA
TGGTTTTTTGTACTTTGCGCAAAATGGCTTCATTAGCTTTACCTGATTTT
TTGCAGAAAGATCGAGTGCTAGTTGGCTTAAATGTGGGTGAAGTGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTGAAAAGAGCAATTT
TATTTTTATTTTTTTTCCATCCTCCGGTCCAAAAGATCATCTCCAAATGT
CCGTAAACCAGAAAATAAAAAAGTAATTGCCTAATATACGGATTTTTGTT
TTTTTGGGAAATTCCCTTTTAAATTTTTCCTGTTAACAAGCTTATCTCGG
GATCGGCTCATTAGCTTTTTCTGACTCTTAGCACAAACATACAAAATGGT
AATTCCAAAATGTAACAGAATCAAAAAAACGCTTTTTCTTTTTTTCGGGG
GTGGGGGGAGAATTTGGGCCAAAAATGCCTAAAAATAGGGTTTTTTGGAC
TTTAAGTAGTTTTTTTTTTCAGGAAAATTTTTTTACCGTAAAAATCAGAT
TTTCTTATTTAGGGAAATTGCCTTTAGTCACTTTGAGGGGAAATGAGCAT
TTCTCGCGATTGGCTTGGTATATTTTTCTAATATTTTGCTTAGTGATATA
AAACGGTAATATTTATATCCTGGAAATGTGATTCTCGAAAATATAATGTT
TTTCTTTTTGGGCAAATTTGGGCCAAAAAGTGCCTATAAATGGGGTATTT
TGGACTTTTTGTGAACTGAAATTGCTTCATTAATTTTTTTCTGATTTTTT
TTGCATAAAAATAGAGGGAAAGGTTTTCAGGAAATTTTTTTCTTGCCATA
AAATTCCGATTTTCTTATTTTAATGAAACAAAAATACCCTTCAGTAAATT
TATGGGGANCATAAATGGAAAGGTTTTCAGGAAATTTTTTTCTTGCCATA
AAATTCCGATTTTCTTATTTTAATGAAACAAAAATACCCTTCAGTAAATT
TATGGGGAAATGAATATTTCTCGCGATTGGCTTGGTATTATTTTCTGATT
TTTAGTTAGTCTGACAATTGTTGCCATTTTTTCTATTTTTTTTACTACAC
TATAGCCTTTAGGTAGGTCTATTCAGCATGTAGCTTGTTATTTTTGAAAT
ATCTATTTCTCCTGTNTTACACTATAGCCTTTAGGTAGGGATGGCTATTC
AGTATGTAACTTGTTATTTTTGAAATATCTATTTCTCCTGTAATTATTTT
ATCTTCATTCTTATTCTTCTCACAAAACAAATCATAAAAGTGATCGAATT
CGAATTTTCGAATCATGGAAAGAAAAATGTTACAATCTAAATTTATTGGT
TTTACATTGTTTCTTTACTTTCTATGATCAAAGAAAATTAAGTTAATTTT
TTTATTTGTGTATACAAAAAAGAAAGAAACAAACAAAAGAATATTAAAAA
ACAAATTTGATTCAAGACCCTTCAACATTGTAATGGCAGAATTAGATAGA
AAAATGGATGAATTGAAGTTAGAAAAAAAGAATCCAATAAACCCTGTGTT
GCACACCATTTTACAAGGTGTTGCTGATGAGAATTGTCAATTTTCTAAAC
TTTATGGTATGCCTCATGTTGTCAAGTTGATATGGGAAAAAGTTTTGGTA
GCAATGCATATGCATATTAAATTTGGAAAGGATGAGAATTATGTGGAAAC
TTACAACCCACCTCCACCATTCATAGCCCAAACTGGCTTTCGGCTTCGAT
TTGATGTGAAATTCCCTAAACCAACTGATATCAATATCAACATGATGCCT
TTTGTCATGGCAAAGAAATTTGAAAACATGCAATTGCCAGATTATCTCAA
ACCATATGCTGATATGATTGAAACTTCGTTTTTTAACGAACTTCCCTTTT
TTGACATAGAGGAATTTGGTAAAATCGGTTATCTAACAATTCATGAGAGT
TTGGTCGAGGAAGGTAAATCTCAGCGGAGACCAGGTCTACATACTGAATC
TCCTGGTTTTATTTATGTTAAGAATGATTTAAGTGATGAAAAGTGTGAGG
AGTTATGCATTGAAAAGGGTTCTGGTCATGACAAAATCATGGCTCTTGGT
GTTTGGTGGGGAAAGCTTGGATACAACAGTCATCATTTCCCTAATGGTGG
TATTTATATGGCATCCAATGTTGATGATTCTTGTAAAGTTTGGGATTGTC
AGATTGTTGCTGACAATAATGGTGAGGAGTTGATTCGCAAACATGGAGAT
ATTGAGCATTTACGATGTTTCTTGCCAGAATCAACACTTTTAAAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042297XLOC_042297Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067738-exon-scaffold_473-1575043694:201676..201781TCONS_00067738-exon-scaffold_473-1575043694:201676..201781Clytia hemisphaericaexon
TCONS_00067738-exon-scaffold_473-1575043694:195234..196109TCONS_00067738-exon-scaffold_473-1575043694:195234..196109Clytia hemisphaericaexon
TCONS_00067738-exon-scaffold_473-1510915933:201676..201781TCONS_00067738-exon-scaffold_473-1510915933:201676..201781Clytia hemisphaericaexon
TCONS_00067738-exon-scaffold_473-1510915933:195234..196109TCONS_00067738-exon-scaffold_473-1510915933:195234..196109Clytia hemisphaericaexon
TCONS_00067738-exon-scaffold_473-1491911889:201676..201781TCONS_00067738-exon-scaffold_473-1491911889:201676..201781Clytia hemisphaericaexon
TCONS_00067738-exon-scaffold_473-1491911889:195234..196109TCONS_00067738-exon-scaffold_473-1491911889:195234..196109Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_473supercontigscaffold_473:195234..201781 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.00946	8.6721	3.23196	3.0153	12.6334	7.86906	8.15583	7.35892	6.06608	8.27857	6.79794	4.41137	7.88357	8.43012	4.23782	5.93289	5.65081	5.52138	6.57587	7.52915	6.2834	5.26035	9.25305	9.82548	3.81038	5.39715	5.74262	2.96073	6.78739	6.33675
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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