TCONS_00067728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067728
Unique NameTCONS_00067728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067728 ID=TCONS_00067728|Name=TCONS_00067728|organism=Clytia hemisphaerica|type=transcript|length=778bp
CTTAGTTGCATCCTGTACTCATTCAGACTTTTATGTAATCTGAAAGTCGC
TAAATAGGGTATAAATAAGGCCCTGTAATGTCTGAAAAAGTCACATCGCA
ACAAAGTTTCCAtaaaacgaaaaagaagaagaattgGTAAGAAGTTGAGC
TAACGAAACTCATAAAAATGAAGACTATAATCATCCTTGGATTATGCTGT
GTGTTAACTCAAGCTTTCATTGAAGAGAAAGGCAATGGCCTTGGACCAGA
CGGTAAACCACTTCCAACAGAGAAACCATACACAACAAGAATTATCCCAA
CACCACCAAATCTTCCATGTCGATTCGGATTAACAGAGAAGGTCAAAGCT
GTTtgtgaaaacatcaaaatcaagaatttcAAGACGATTCACCCAGATGA
TGACCATTGGTTTATTTTTTGCAACGAGGAAGCCAGCAGATGTCAACGAT
GTTCTGGTGATTTAGTCTTCAACACCAATTGCCAAATGTGTTTAAAGAGA
GGAGCAGATTGTCCAGCACCAACGAAAGCACCAGTATTGAGAGCTTGTCC
TGATGATGGATGTCCATTTTGCTCAACTCTTTATGGTTACGAAGCTCACT
CCAATGTGTTGAACTACTGTCGATGTGTACATGGTATTGGGTATTGTATG
CTTTGTCCAACTGGTACCATATTCGATGCCAAGTATAAATGCTGCATGAC
CAGCCTTGCCGAGTAAGAACAGCCAATACTCACAATGAAACCAAAAGGAA
GAGTACGTTAAAGGGGAAAACTTAATCG
Run BLAST on NCBI

protein sequence of TCONS_00067728-protein

>TCONS_00067728-protein ID=TCONS_00067728-protein|Name=TCONS_00067728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MKTIIILGLCCVLTQAFIEEKGNGLGPDGKPLPTEKPYTTRIIPTPPNLP
CRFGLTEKVKAVCENIKIKNFKTIHPDDDHWFIFCNEEASRCQRCSGDLV
FNTNCQMCLKRGADCPAPTKAPVLRACPDDGCPFCSTLYGYEAHSNVLNY
CRCVHGIGYCMLCPTGTIFDAKYKCCMTSLAE
Run BLAST on NCBI

transcript from alignment at scaffold_473:66735..68912-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067728 ID=TCONS_00067728|Name=TCONS_00067728|organism=Clytia hemisphaerica|type=transcript|length=2178bp|location=Sequence derived from alignment at scaffold_473:66735..68912- (Clytia hemisphaerica)
CTTAGTTGCATCCTGTACTCATTCAGACTTTTATGTAATCTGAAAGTCGC
TAAATAGGGTATAAATAAGGCCCTGTAATGTCTGAAAAAGTCACATCGCA
ACAAAGTTTCCATAAAACGAAAAAGAAGAAGAATTGGTAAGAAGTTGAGC
TAACGAAACTCATAAAAATGAAGACTATAATCATCCTTGGATTATGCTGT
GTGTTAACTCAAGGTAAGAAGAGCGAATAAATGATTAAAGAATATTAAGC
TCCAGCTTCGTTCAATTTTTTTAAGACGACATACTACACAATTCTTTCTT
CTGAAATTGATACAGCATTCTCCAGCATAATTTGAACAGTATCCTACTTG
AATCACCGCAAATATACAATTTTTTTACGCCGCTTGTTCATGATTAATCT
TTGAACTCCGTGTACCATTTTCTATTGAATTTAAAGACTTATTTCATCGA
CCCTAGCGGATCTGCTTTAAAATAATGCTAAGTTTTTTTTCCATGATTTT
GAACTGGTTTTCCCTTTTTAGCTTTCATTGAAGAGAAAGGCAATGGCCTT
GGACCAGACGGTAAACCACTTCCAACAGAGAAACCATACACAACAAGAAT
TATCCCAACACCACCAAATCTTCCATGTAAGATACTGTCTGTTATATACC
AATTTTGTGGATTCAATATTATCAATTTTCCTGGTCACTTGCTTCTTAAT
CATCCAAGTCGCATCTCTGTCTCAGTGACCAGCGGACCCCTTTTGATTGA
GGACGTATATCGTTTATCGGTCAGATAACTTTAGAACGACTTGCAATTTT
TAATTTCATAAATAATTTTTTCCCAAGTGGTATAAGATATCTGTTCTGCT
AAAATAAGGACTGAAGCCATGTCATAATACGATAATACCATACTCGAGTG
NGTGGTATAACATATCAGTTCTGCTCAAATAAGGACTGAAGCCATGTCAT
AGTACGAAAATACCATACTCAAGTGCTAAAAGGTGTGGTCTGCCAAGTTA
TGCTTTAGTGGATAAGTGCCTAGCGACACCAGCGATTGGTTTTGATTTTA
AAAATCTATGGAATAAATTTCAGGTCGATTCGGATTAACAGAGAAGGTCA
AAGCTGTTTGTGAAAACATCAAAATCAAGAATTTCAAGACGATTCACCCA
GATGATGACCATTGGTTTATTTTTTGCAACGAGGAAGCCAGCAGATGTCA
ACGATGTTCTGGTGATTTAGTCTTCAACACCAATTGCCAAATGTGTTTAA
AGAGAGGAGCAGATTGTCCAGCACCAACGAAAGCACCAGTATTGAGAGCT
TGTAAGTGTTTTGTCTTTATTTTCTCCATGAGATACTCACACCTGTCCAT
CACATGCATCTTTGATGGATTATCTTAGCTGGAAATTTTTTCCAAAACTA
GTGAAATTTAATTAACCCGATGCAAACTAATAGACGATATCGGCCACACA
TGAAAACTCATATTTGACCCCCGAGAATTCCCCACAATGCTTTGTGCTGA
AAAAAAATTCACTGTGAACTTTTTTCTGCACAAAGCATTGTGGGTAATTT
TGGGAGGTCAAATCTGTGTTTTCACGTTAAGCCGAAATCGTATATTCTAA
GGCGATTTTGCATACTAAATTTTACCGTAGCCCATATATATGACATTTTA
GTCTTGTTATCAATTTATTTACTAACTGAGATGTTCAACCATAAAAATTT
ATTACTGCAGTGACGTAGAAAAGTCACGAATAGTTCCATTTATACAGTGA
CGGAAAAATCGTCTGAGACGAGTAGTTTGTAAAATGTGATCTGAAGAGGA
GATCGTATCTATTGAAACATAAATGGAAAGTGCACTCCTCCATAATGCTC
ATTTTCTAAATAGCTCGTCTCAGACAAATTAATCGTCTCAGTATAAATAG
AACTAATCTTATGAAATAGGCCAGTAATCCGTTCTTTGTCTATTAGGTCC
TGATGATGGATGTCCATTTTGCTCAACTCTTTATGGTTACGAAGCTCACT
CCAATGTGTTGAACTACTGTCGATGTGTACATGGTATTGGGTATTGTATG
CTTTGTCCAACTGGTACCATATTCGATGCCAAGTATAAATGCTGCATGAC
CAGCCTTGCCGAGTAAGAACAGCCAATACTCACAATGAAACCAAAAGGAA
GAGTACGTTAAAGGGGAAAACTTAATCG

Coding sequence (CDS) from alignment at scaffold_473:66735..68912-

>TCONS_00067728 ID=TCONS_00067728|Name=TCONS_00067728|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at scaffold_473:66735..68912- (Clytia hemisphaerica)
GTCCTGATGATGGATGTCCATTTTGCTCAACTCTTTATGGTTACGAAGCT
CACTCCAATGTGTTGAACTACTGTCGATGTGTACATGGTATTGGGTATTG
TATGCTTTGTCCAACTGGTACCATATTCGATGCCAAGTATAAATGCTGCA
TGACCAGCCTTGCCGAGTAAGTCGATTCGGATTAACAGAGAAGGTCAAAG
CTGTTTGTGAAAACATCAAAATCAAGAATTTCAAGACGATTCACCCAGAT
GATGACCATTGGTTTATTTTTTGCAACGAGGAAGCCAGCAGATGTCAACG
ATGTTCTGGTGATTTAGTCTTCAACACCAATTGCCAAATGTGTTTAAAGA
GAGGAGCAGATTGTCCAGCACCAACGAAAGCACCAGTATTGAGAGCTTCT
TTCATTGAAGAGAAAGGCAATGGCCTTGGACCAGACGGTAAACCACTTCC
AACAGAGAAACCATACACAACAAGAATTATCCCAACACCACCAAATCTTC
CATATGAAGACTATAATCATCCTTGGATTATGCTGTGTGTTAACTCAAGG
TCCTGATGATGGATGTCCATTTTGCTCAACTCTTTATGGTTACGAAGCTC
ACTCCAATGTGTTGAACTACTGTCGATGTGTACATGGTATTGGGTATTGT
ATGCTTTGTCCAACTGGTACCATATTCGATGCCAAGTATAAATGCTGCAT
GACCAGCCTTGCCGAGTAAGTCGATTCGGATTAACAGAGAAGGTCAAAGC
TGTTTGTGAAAACATCAAAATCAAGAATTTCAAGACGATTCACCCAGATG
ATGACCATTGGTTTATTTTTTGCAACGAGGAAGCCAGCAGATGTCAACGA
TGTTCTGGTGATTTAGTCTTCAACACCAATTGCCAAATGTGTTTAAAGAG
AGGAGCAGATTGTCCAGCACCAACGAAAGCACCAGTATTGAGAGCTTCTT
TCATTGAAGAGAAAGGCAATGGCCTTGGACCAGACGGTAAACCACTTCCA
ACAGAGAAACCATACACAACAAGAATTATCCCAACACCACCAAATCTTCC
ATATGAAGACTATAATCATCCTTGGATTATGCTGTGTGTTAACTCAAGGT
CCTGATGATGGATGTCCATTTTGCTCAACTCTTTATGGTTACGAAGCTCA
CTCCAATGTGTTGAACTACTGTCGATGTGTACATGGTATTGGGTATTGTA
TGCTTTGTCCAACTGGTACCATATTCGATGCCAAGTATAAATGCTGCATG
ACCAGCCTTGCCGAGTAAGTCGATTCGGATTAACAGAGAAGGTCAAAGCT
GTTTGTGAAAACATCAAAATCAAGAATTTCAAGACGATTCACCCAGATGA
TGACCATTGGTTTATTTTTTGCAACGAGGAAGCCAGCAGATGTCAACGAT
GTTCTGGTGATTTAGTCTTCAACACCAATTGCCAAATGTGTTTAAAGAGA
GGAGCAGATTGTCCAGCACCAACGAAAGCACCAGTATTGAGAGCTTCTTT
CATTGAAGAGAAAGGCAATGGCCTTGGACCAGACGGTAAACCACTTCCAA
CAGAGAAACCATACACAACAAGAATTATCCCAACACCACCAAATCTTCCA
TATGAAGACTATAATCATCCTTGGATTATGCTGTGTGTTAACTCAAGGTC
CTGATGATGGATGTCCATTTTGCTCAACTCTTTATGGTTACGAAGCTCAC
TCCAATGTGTTGAACTACTGTCGATGTGTACATGGTATTGGGTATTGTAT
GCTTTGTCCAACTGGTACCATATTCGATGCCAAGTATAAATGCTGCATGA
CCAGCCTTGCCGAGTAAGTCGATTCGGATTAACAGAGAAGGTCAAAGCTG
TTTGTGAAAACATCAAAATCAAGAATTTCAAGACGATTCACCCAGATGAT
GACCATTGGTTTATTTTTTGCAACGAGGAAGCCAGCAGATGTCAACGATG
TTCTGGTGATTTAGTCTTCAACACCAATTGCCAAATGTGTTTAAAGAGAG
GAGCAGATTGTCCAGCACCAACGAAAGCACCAGTATTGAGAGCTTCTTTC
ATTGAAGAGAAAGGCAATGGCCTTGGACCAGACGGTAAACCACTTCCAAC
AGAGAAACCATACACAACAAGAATTATCCCAACACCACCAAATCTTCCAT
ATGAAGACTATAATCATCCTTGGATTATGCTGTGTGTTAACTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042292XLOC_042292Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067728-exon-scaffold_473-1575043694:68700..68912TCONS_00067728-exon-scaffold_473-1575043694:68700..68912Clytia hemisphaericaexon
TCONS_00067728-exon-scaffold_473-1575043694:68287..68391TCONS_00067728-exon-scaffold_473-1575043694:68287..68391Clytia hemisphaericaexon
TCONS_00067728-exon-scaffold_473-1575043694:67612..67839TCONS_00067728-exon-scaffold_473-1575043694:67612..67839Clytia hemisphaericaexon
TCONS_00067728-exon-scaffold_473-1575043694:66735..66966TCONS_00067728-exon-scaffold_473-1575043694:66735..66966Clytia hemisphaericaexon
TCONS_00067728-exon-scaffold_473-1510915933:68700..68912TCONS_00067728-exon-scaffold_473-1510915933:68700..68912Clytia hemisphaericaexon
TCONS_00067728-exon-scaffold_473-1510915933:68287..68391TCONS_00067728-exon-scaffold_473-1510915933:68287..68391Clytia hemisphaericaexon
TCONS_00067728-exon-scaffold_473-1510915933:67612..67839TCONS_00067728-exon-scaffold_473-1510915933:67612..67839Clytia hemisphaericaexon
TCONS_00067728-exon-scaffold_473-1510915933:66735..66966TCONS_00067728-exon-scaffold_473-1510915933:66735..66966Clytia hemisphaericaexon
TCONS_00067728-exon-scaffold_473-1491911889:68700..68912TCONS_00067728-exon-scaffold_473-1491911889:68700..68912Clytia hemisphaericaexon
TCONS_00067728-exon-scaffold_473-1491911889:68287..68391TCONS_00067728-exon-scaffold_473-1491911889:68287..68391Clytia hemisphaericaexon
TCONS_00067728-exon-scaffold_473-1491911889:67612..67839TCONS_00067728-exon-scaffold_473-1491911889:67612..67839Clytia hemisphaericaexon
TCONS_00067728-exon-scaffold_473-1491911889:66735..66966TCONS_00067728-exon-scaffold_473-1491911889:66735..66966Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067728-proteinTCONS_00067728-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_473supercontigscaffold_473:66735..68912 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.436457	0.0608021	0	0.0690682	0.0840839	0.199333	1.28259	1.1257	0.052542	0.390491	0	0	1.24403	1.29194	323.495	50.6473	0	0.335827	0	0.138716	0	0	0.0714905	0	0	0	2.30838	1.91611	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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