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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067706 ID=TCONS_00067706|Name=TCONS_00067706|organism=Clytia hemisphaerica|type=transcript|length=1534bp
ATCGAATCGTACCACTTCtgtagaaagaaagttcttgtgtgtgtttcact
aaatttgcaatgtttatcaaagtttctctccgTGCCATATTAAGTGTCAT
GAGACATTTtatatgaataacttttacaaaaaaacaattctcgataactt
taacgtcatgaaaattgtagtgaaagttaattctttttaatcataatgac
tgttgtaaaaacaattattgtgttgatagattttcttacattttgttaaa
cacacacaacaaccttctactcagaatcatgttcgaactcgatccttttt
tcgggacaccctgtagaaccTAATTATAATTGTcgtaaaaataacaaaat
agtTTTATAACAAGATGCCAAAAACAATTGCAGAACGTGATGTACCAAAA
TAAAAATCCTTTGAAACACCACCAGCGTCCCaacattcaaaatctttgtc
tTGATCCGCAATTAATTTATAGAATTTTAATCGTTTTGCAAACTTATTTG
GATGAAGAAGGAAGAAGGAAACTTTCTCCTTTTGCCATGTTTCTCTACTC
AAAAACCCTTCTAACATGAAATCCGATAGTTCTTCCTTTGCCTGGCTACC
TTTTCTTTTCGACAAAATACTCAAACCTCCAAAGTAATCGAATTCCTTTC
tcacaaaaatatatttgttcGTCATataaacttttctattttccaTCATT
CCAGAGATTGATTTGTACCATTCTGGATAAGAAGGATACATTGCGAAAGA
CTCATTTTCTTCGTGAAAATATTCTGCCCCCCAAACCAAACGATCAATTA
TTGTCAATGTTTTCGCAGGTATTTTCGTAAATTGGTCAGGATTCAAATTG
TCAACACCAGCCGCACTTGTCGAAATTTTAGTAGGTATCCTATCAGCTGG
ATTTCTTGACTTTGTCTCCTTTATTAACTTCATCTCATATGCTTTTTCCA
TctgtaaaattttgattttgtgttCATTTTCTAAGTCCTTCATTTTCAAC
TtccattcattttcttttgcaGCAATTACTTTTTCTTGTTCTTTCTTATA
TAAAGTTATTTCGTTCTCTTTGGCTGCTAATTGTTTCTCCATTTGAGCCA
GTTTCTCATGAGATTCGTTTTGCTGCTTAAGCATTTCGTCTCTCAATGTC
TGGTCCTTAGCTGCTAATTGGAGCTTGAACTCGACATCCTTTTTAGCAAG
CTTATTTTGTAAGTCATCTTTCTCTTTCTGTAGCAGTCGATCGGCTTGAA
CTTGTTTGGTTTCAATTTCATGAGAGTTTTTCAGCTTCATAACCTCAAGT
TCGTGAGTTAAATTGACAATTTTCATTCGTGACTCCATcaattcaatttt
ggattcataagccaatttttgaatttctttccgATGTTCTTCTTTGAGTT
TCGTGATTTCATGACTATTATCTGTATTTCTACCATGTGCGCTATGCGCT
AGATTTCTCAAATCGTCTTGGTTGGAATCCATTTTTTCTTAACTTGAACA
CAAGAAAATCACACATACAGCAGTAAATAAAAAT Run BLAST on NCBI protein sequence of TCONS_00067706-protein >TCONS_00067706-protein ID=TCONS_00067706-protein|Name=TCONS_00067706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp
MDSNQDDLRNLAHSAHGRNTDNSHEITKLKEEHRKEIQKLAYESKIELME
SRMKIVNLTHELEVMKLKNSHEIETKQVQADRLLQKEKDDLQNKLAKKDV
EFKLQLAAKDQTLRDEMLKQQNESHEKLAQMEKQLAAKENEITLYKKEQE
KVIAAKENEWKLKMKDLENEHKIKILQMEKAYEMKLIKETKSRNPADRIP
TKISTSAAGVDNLNPDQFTKIPAKTLTIIDRLVWGAEYFHEENESFAMYP
SYPEWYKSISGMMENRKVYMTNKYIFVRKEFDYFGGLSILSKRKGSQAKE
ELSDFMLEGFLSRETWQKEKVSFFLLHPNKFAKRLKFYKLIADQDKDFEC
WDAGGVSKDFYFGTSRSAIVFGILL Run BLAST on NCBI transcript from alignment at scaffold_472:139214..140747 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067706 ID=TCONS_00067706|Name=TCONS_00067706|organism=Clytia hemisphaerica|type=transcript|length=1534bp|location=Sequence derived from alignment at scaffold_472:139214..140747 (Clytia hemisphaerica)
ATTTTTATTTACTGCTGTATGTGTGATTTTCTTGTGTTCAAGTTAAGAAA
AAATGGATTCCAACCAAGACGATTTGAGAAATCTAGCGCATAGCGCACAT
GGTAGAAATACAGATAATAGTCATGAAATCACGAAACTCAAAGAAGAACA
TcggaaagaaattcaaaaattggcttatgaatccaaaattgaattgATGG
AGTCACGAATGAAAATTGTCAATTTAACTCACGAACTTGAGGTTATGAAG
CTGAAAAACTCTCATGAAATTGAAACCAAACAAGTTCAAGCCGATCGACT
GCTACAGAAAGAGAAAGATGACTTACAAAATAAGCTTGCTAAAAAGGATG
TCGAGTTCAAGCTCCAATTAGCAGCTAAGGACCAGACATTGAGAGACGAA
ATGCTTAAGCAGCAAAACGAATCTCATGAGAAACTGGCTCAAATGGAGAA
ACAATTAGCAGCCAAAGAGAACGAAATAACTTTATATAAGAAAGAACAAG
AAAAAGTAATTGCtgcaaaagaaaatgaatggaAGTTGAAAATGAAGGAC
TTAGAAAATGaacacaaaatcaaaattttacagATGGAAAAAGCATATGA
GATGAAGTTAATAAAGGAGACAAAGTCAAGAAATCCAGCTGATAGGATAC
CTACTAAAATTTCGACAAGTGCGGCTGGTGTTGACAATTTGAATCCTGAC
CAATTTACGAAAATACCTGCGAAAACATTGACAATAATTGATCGTTTGGT
TTGGGGGGCAGAATATTTTCACGAAGAAAATGAGTCTTTCGCAATGTATC
CTTCTTATCCAGAATGGTACAAATCAATCTCTGGAATGAtggaaaataga
aaagtttatATGACgaacaaatatatttttgtgaGAAAGGAATTCGATTA
CTTTGGAGGTTTGAGTATTTTGTCGAAAAGAAAAGGTAGCCAGGCAAAGG
AAGAACTATCGGATTTCATGTTAGAAGGGTTTTTGAGTAGAGAAACATGG
CAAAAGGAGAAAGTTTCCTTCTTCCTTCTTCATCCAAATAAGTTTGCAAA
ACGATTAAAATTCTATAAATTAATTGCGGATCAagacaaagattttgaat
gttGGGACGCTGGTGGTGTTTCAAAGGATTTTTATTTTGGTACATCACGT
TCTGCAATTGTTTTTGGCATCTTGTTATAAAactattttgttatttttac
gACAATTATAATTAggttctacagggtgtcccgaaaaaaggatcgagttc
gaacatgattctgagtagaaggttgttgtgtgtgtttaacaaaatgtaag
aaaatctatcaacacaataattgtttttacaacagtcattatgattaaaa
agaattaactttcactacaattttcatgacgttaaagttatcgagaattg
tttttttgtaaaagttattcatataAAATGTCTCATGACACTTAATATGG
CAcggagagaaactttgataaacattgcaaatttagtgaaacacacacaa
gaactttctttctacaGAAGTGGTACGATTCGAT Coding sequence (CDS) from alignment at scaffold_472:139214..140747 >TCONS_00067706 ID=TCONS_00067706|Name=TCONS_00067706|organism=Clytia hemisphaerica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_472:139214..140747 (Clytia hemisphaerica)
ATGGATTCCAACCAAGACGATTTGAGAAATCTAGCGCATAGCGCACATGG
TAGAAATACAGATAATAGTCATGAAATCACGAAACTCAAAGAAGAACATc
ggaaagaaattcaaaaattggcttatgaatccaaaattgaattgATGGAG
TCACGAATGAAAATTGTCAATTTAACTCACGAACTTGAGGTTATGAAGCT
GAAAAACTCTCATGAAATTGAAACCAAACAAGTTCAAGCCGATCGACTGC
TACAGAAAGAGAAAGATGACTTACAAAATAAGCTTGCTAAAAAGGATGTC
GAGTTCAAGCTCCAATTAGCAGCTAAGGACCAGACATTGAGAGACGAAAT
GCTTAAGCAGCAAAACGAATCTCATGAGAAACTGGCTCAAATGGAGAAAC
AATTAGCAGCCAAAGAGAACGAAATAACTTTATATAAGAAAGAACAAGAA
AAAGTAATTGCtgcaaaagaaaatgaatggaAGTTGAAAATGAAGGACTT
AGAAAATGaacacaaaatcaaaattttacagATGGAAAAAGCATATGAGA
TGAAGTTAATAAAGGAGACAAAGTCAAGAAATCCAGCTGATAGGATACCT
ACTAAAATTTCGACAAGTGCGGCTGGTGTTGACAATTTGAATCCTGACCA
ATTTACGAAAATACCTGCGAAAACATTGACAATAATTGATCGTTTGGTTT
GGGGGGCAGAATATTTTCACGAAGAAAATGAGTCTTTCGCAATGTATCCT
TCTTATCCAGAATGGTACAAATCAATCTCTGGAATGAtggaaaatagaaa
agtttatATGACgaacaaatatatttttgtgaGAAAGGAATTCGATTACT
TTGGAGGTTTGAGTATTTTGTCGAAAAGAAAAGGTAGCCAGGCAAAGGAA
GAACTATCGGATTTCATGTTAGAAGGGTTTTTGAGTAGAGAAACATGGCA
AAAGGAGAAAGTTTCCTTCTTCCTTCTTCATCCAAATAAGTTTGCAAAAC
GATTAAAATTCTATAAATTAATTGCGGATCAagacaaagattttgaatgt
tGGGACGCTGGTGGTGTTTCAAAGGATTTTTATTTTGGTACATCACGTTC
TGCAATTGTTTTTGGCATCTTGTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067706-exon-scaffold_472-1491911889:139214..140747 | TCONS_00067706-exon-scaffold_472-1491911889:139214..140747 | Clytia hemisphaerica | exon |
| TCONS_00067706-exon-scaffold_472-1510915933:139214..140747 | TCONS_00067706-exon-scaffold_472-1510915933:139214..140747 | Clytia hemisphaerica | exon |
| TCONS_00067706-exon-scaffold_472-1575043694:139214..140747 | TCONS_00067706-exon-scaffold_472-1575043694:139214..140747 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_472 | supercontig | scaffold_472:139214..140747 . |
Blast
The following BLAST results are available for this feature:
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