TCONS_00067702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067702
Unique NameTCONS_00067702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067702 ID=TCONS_00067702|Name=TCONS_00067702|organism=Clytia hemisphaerica|type=transcript|length=863bp
gtaaactacacgtttttataagaacaagattACGAGAGGCTCAAATTTAG
TCAGAACAACTTTAGAACAAATTATGAGCATTTCCAGCCATTTCAGGAAA
GTAACATAAGTTATAACTACAGATAACGAAAATATGATAACAGctgagcc
tcagcaaaaatttatttttctcttaagAAAGCGTTGTAATATATGATACa
tgaaaaatgtaataaaacATCTGGGATAAATATATCACAAGTCCATTCGT
GTGTTGTCGATAAATTGTTGCACGCACACATTGGAAAAGTTCATAACATA
TGTAATGGATATTATGAGCATTGAATGCAACGTAGATAGtctcttaaaaa
aattcatcgATTCCCGAAACTTTCGGGAAAAGGGCTGTAAATCTTTGAAT
AGATTATATTAGCACGGTCTAATTGTGTAAAAATTCATGTCCAATAAAGT
ATTCAGGCAGAATAATCCTTTCTCAAATCCTTTTCGTAAAATATGGCAAT
ATTATAAACGTGAGTCTAATcgtttttagtcatttttcatgaatttNGTA
AAATATGGCAATATTATAAACGTGAGTCTAATCgctttttagtcattttt
catgaattCAGATCTGGTCTGTAATTCTTTCAACTTGTAAACAGGATCAc
caattttgataaaaccaGTCTTTCGAACGCCGTAATTGAATCCAAATAAT
CCGCCCTTAAGTTTATGTGCATGAGGTGTAAAAGCTGGACCTGAACGATT
CCtaagaaacaaaataaaaacggtTGACTCTCGTTGATATGAAATGGGTA
AGTTAaaattcaatagaccttttcataaattacgtcacgaacatcgtttg
ccttgttttgaaa
Run BLAST on NCBI

transcript from alignment at scaffold_472:699..1561

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067702 ID=TCONS_00067702|Name=TCONS_00067702|organism=Clytia hemisphaerica|type=transcript|length=863bp|location=Sequence derived from alignment at scaffold_472:699..1561 (Clytia hemisphaerica)
tttcaaaacaaggcaaacgatgttcgtgacgtaatttatgaaaaggtcta
ttgaatttTAACTTACCCATTTCATATCAACGAGAGTCAaccgtttttat
tttgtttcttaGGAATCGTTCAGGTCCAGCTTTTACACCTCATGCACATA
AACTTAAGGGCGGATTATTTGGATTCAATTACGGCGTTCGAAAGACtggt
tttatcaaaattggTGATCCTGTTTACAAGTTGAAAGAATTACAGACCAG
ATCTGaattcatgaaaaatgactaaaaagcGATTAGACTCACGTTTATAA
TATTGCCATATTTTACNaaattcatgaaaaatgactaaaaacgATTAGAC
TCACGTTTATAATATTGCCATATTTTACGAAAAGGATTTGAGAAAGGATT
ATTCTGCCTGAATACTTTATTGGACATGAATTTTTACACAATTAGACCGT
GCTAATATAATCTATTCAAAGATTTACAGCCCTTTTCCCGAAAGTTTCGG
GAATcgatgaatttttttaagagaCTATCTACGTTGCATTCAATGCTCAT
AATATCCATTACATATGTTATGAACTTTTCCAATGTGTGCGTGCAACAAT
TTATCGACAACACACGAATGGACTTGTGATATATTTATCCCAGATgtttt
attacatttttcatGTATCATATATTACAACGCTTTcttaagagaaaaat
aaatttttgctgaggctcagCTGTTATCATATTTTCGTTATCTGTAGTTA
TAACTTATGTTACTTTCCTGAAATGGCTGGAAATGCTCATAATTTGTTCT
AAAGTTGTTCTGACTAAATTTGAGCCTCTCGTaatcttgttcttataaaa
acgtgtagtttac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042267XLOC_042267Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067702-exon-scaffold_472-1491911889:699..1561TCONS_00067702-exon-scaffold_472-1491911889:699..1561Clytia hemisphaericaexon
TCONS_00067702-exon-scaffold_472-1510915933:699..1561TCONS_00067702-exon-scaffold_472-1510915933:699..1561Clytia hemisphaericaexon
TCONS_00067702-exon-scaffold_472-1575043694:699..1561TCONS_00067702-exon-scaffold_472-1575043694:699..1561Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:699..1561 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.6416	13.006	7.81395	4.44429	9.98506	5.01417	10.7977	12.2966	3.20381	2.94562	3.53428	2.93175	2.58285	2.2721	3.67759	4.18085	4.33236	5.5161	1.55198	2.48985	8.64452	7.97357	12.5899	11.252	2.50247	4.8428	6.0551	3.93848	10.8818	13.5539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top