TCONS_00067686 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067686
Unique Name	TCONS_00067686
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	573

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_472:114435..119359-

transcript sequence

>TCONS_00067686 ID=TCONS_00067686|Name=TCONS_00067686|organism=Clytia hemisphaerica|type=transcript|length=573bp
gaaaatttgaattaaataaTATTAACTAGCAATTCACAAATTTCACATAA
TCACACATTTTCGCTGTGACCTTTTTATGACCATGTAATCAATAACGAAA
ACATTGGTTTCGATTCTTGTTCTCGAGAACCGATCTTTAGAAACACCCTC
TTGGCCAGGTGAAAGACGTAACTCCTTACAATGTACTTTGTACTGCTTAC
GAAAAGCTTTCAACACGTTGTCAAGTTGGAGATGATAATAATCTTTGGTA
ATTGTATATTCCACAATGTTTTTCTCTGTAGAATTTAAACGAATTTGACG
AATTCTAATCAAGACAAATTCTCTTAATTCGTATTTTACATTTGGCGATA
TTCCGCATTCTTCTAcggttttgaaattttcatgaataTTAGAATAAGTT
CCAAATCGAAAAATATCTGAAGGAGACTCTCAACCAGTTGATGAAACAGC
AGAACTCTTATCGTCAAGCTGTTTCTGGATATTTTCTAATTTCCAGCCGT
AatgattttcaagaattttcattttaaccTCTGCAATTGTGTCTGAATAA
GAGACATGTACGACCGTCATCAT

Run BLAST on NCBI

transcript from alignment at scaffold_472:114435..119359-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067686 ID=TCONS_00067686|Name=TCONS_00067686|organism=Clytia hemisphaerica|type=transcript|length=4925bp|location=Sequence derived from alignment at scaffold_472:114435..119359- (Clytia hemisphaerica)
GAAAATTTGAATTAAATAATATTAACTAGCAATTCACAAATTTCACATAA
TCACACATTTTCGCTGTGGCCTTTTTATGACCATGTAATCAATAACGAAA
ACATTGGTTTCGATTCTTGTTCTCGAGAACTGATCTTTAGAAACACCCTC
TTGGCCAGGTAAAAGACGCAACTCCTTACGATGTACTTTGTATTGCTTAC
GAAAAGCTTTCAACACTTCGTCAAGTTGGAGATGATAATAATCTTTGGTA
ATTGTATATTCCACAATGTTTTTCTCTGTAGAATCTAAACGAATTTGACG
AATTCTAATCAAGACAAATTCTCTTAATTCGTATTTTACATTTGGCGATA
TTCCGCATTCTTCTACGGTTTTGAAATTTTCATAAATATTAGAATAAGTT
CCAAATTGAAAAAAATCTGAAGGAGACTCCCAACCAGTTGATGAAACAGC
AGAACTCTCATCGTCAAGTTGATTTTGGATATTTTCTAATTTCCAGCTGT
AATGATTTTCAAGAATTTTCATTTTAACCTCTGCAATTGTGTCTGAATAA
GAGACATGTACGACCGTCATCATCGAACTTCCAAATCCTAAATGGTAGAC
CGCAGTTTCGATTTCGAACGGCTTCTTATTAATGACAACGTTAAAACAAA
TCACTCCTCCTTCCAAACGTTCTTTTTGCATCAAAAGATCAAATATCTTG
GTCGAATCGTTTTCAATCTCTTGATGTTGGAAAAGTATACTTTGTTGATG
GAGAGGAATATCATGTGTTTTATAAACATAATTTTTAATGTCTTGGATAG
ATTCCATTTCTCTTGGATTCAACTCTTCTTCTTTTGTTAAGAATTTCAAC
TTGAGTGATTTCAGATGTTTGATTCCATATTGAATACATATATCGTCCAT
CTTTTCGTTTTCTTGAAAATAAGCAACAACAAACATGATCATACTTTCAC
GAAAATCTTTTTGTCCATCGAAAACGGACTCTCTAGTGTATGGGAAAACT
TCTTTATCTTTAGAGAACATTATCAAATGATCAGCTGGCAATCCTGTAAT
GGACCCGATATGTTCATAAATTTCAGCCATATTGCGATCAGTATATGTTG
TTGTAATTATTTGATTAGATATTCCAAATCCTCTAACGGTTAATCTCCAT
AACATTTTCAAGTCTTTTGTCTGTTTCCGTTCGAGAAGCTGTAGAGATTG
TCTGCATCTTTTCAATCCAAAATAAAGTTTGATTTCATTTAAACCAAAAG
TAAGTTCTGAAATGTTCGTATCACCACGAAGCGGTGTTTCAGTATTGTTT
CCTTGAAACATAAGCATCAGATCAACTGGTACATGTACAAGAAAATCTGC
AATCTTTCTCATTACAAATGATATTTTGTCATTCAATTCAAATTTATTTG
AGTTAAAAAATGGCTCTTGATTAAAATGAAAACCATGATAAACGGACACC
TTCACTTTACCAAAGGCCATGTTGGTTGCGAGGTTTCCTAGTAAATTAAT
GTCTTTTGAAATTGAACCCCTTTAGTTTGTTGAATCCCCGATTGAACCCC
TTTAGTTTGTTGAATCCCTTTAGTTTGTCGTATGATTGTTGTGCTCTCTG
TAACTTTTGATAAGCAATCATTTCAAATCAAACCAACTCATTCGAACCAT
AATATAAGTTCTCTCTACATAACATCATATTATCTCTTATTTAAATTTTC
TCTTCGTTTTCATGATATAATAGATTTCTCTTTCCTTTCATTGATGTACA
CGCTTTTTTTTTATAAGAATACACTTTATAAAAATGTCCATGATGAAAAA
ATTAAGAATAATGGTAAGAATATCACCATCATGGAATTTTTGCTACTCAA
GCTAAGAATATGCCATTTACAGAACAATTTTAACTGTAAATTGCCAGTTT
TTAATCATAAATTGTCAATTACACCAAGGCTCACGCCTTTCACAAAAATG
TCATTTTATGCTTGAGACGTATGTACTAAATGTTAAATCTAGTCTGAATT
AAGATCCTAACCTAGGAATGCTGTAAGAATATTTTAGGATGATTTTCCCA
AAAAAGTTAAGAATATCCATGATGAAATGGATTTACACCATTCTTATAAA
AAAGCGTGTAATCTGGTGTAATATAAATAAACCGCTCAGGTAATTTTCAT
CAATTATAAAACGGCTTTATTTTGATTATAAACACATGACGTGCTGTTTT
AAATCCTAACAAAAACGTGAATCTTTTAAGTTACACGTCCTTTTATAAGA
ACAAACTATATAAGAACATAAGGCCTCGACGGACAAAATATTAAGAACAA
GTTAAAACTATAAATCAAAACAATCAAAACTAAAATCAAATTGAGATGTG
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCGTGAGATATCGCAT
TTCAAATCACACATATATTTTTCAGATAACAGCATTTTATGAGCGTTTAT
TTATCCAGATGAAGATTAAGTGGTATCAGGCCGATCCTTACTCAATTTGT
CTAAAGATTGGTACCTTTATCTTTAGAAAAAAATTCTTCTGAAATGACTG
GAAAAGACTGAAATGACGTCAATTGCTTTGACGAAGACTCTACAGTGCAC
AGTATATTTTTGTAAACTTGAAACGAATTTTTTGTATAGAATTTTTGACT
GAAGATCGTGACGAAAAGTTGCGTGAAACTTTAAGTATCAAACAATTCTT
ATCTCAACTTCAATTTATTGTGTAGAAAAAAATTCAAAAATTTGCAGTAC
TGTAAATAACAATTCAAATTTTCTATCAATTCAGTGGATGTCAAAAAGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTCAAAATCTTTCCAATCTCA
CCCCCTCCCAAACTGAAAACTCGTGGCTGTAGTGTCAAAATTCGTTAGCC
CTCTACGGAATTAGTTTTAAAATTTCCATAGATATAAAGTCTCTTAAAGT
CTTATAGACAAATAAGGTTTGATTCGCTACGATCGATTTTGCTAAAATTC
GTTTTCTGCTAATATTTCACCACTAACGAACAAAAAAATAAAAAGAGCTT
CAGAAAGTTTAAATTAAATAATATTAACTAGCAATTCACAAATTTCACGT
AATCACACATTTTCGCTGTGACCTTTTTATGACCATGTAATCAATAACGA
AAACATTGGTTTCGATTCTTGTTCTCGAGAACCGATCTTTAGAAACACCC
TCTTGGCCAGGTGAAAGACGTAACTCCTTACAATGTACTTTGTACTGCTT
ACGAAAAGCTTTCAACACGTTGTCAAGTTGGAGATGATAATAATCTTTGG
TAATTGTATATTCCACAATGTTTTTCTCTGTAGAATTTAAACGAATTTGA
CGAATTCTAATCAAGACAAATTCTCTTAATTCGTATTTTACATTTGGCGA
TATTCCGCATTCTTCTACGGTTTTGAAATTTTCATGAATATTAGAATAAG
TTCCAAATCGAAAAATATCTGAAGGAGACTCTCAACCAGTTGATGAAACA
GCAGAACTCTTATCGTCAAGCTGTTTCTGGATATTTTCTAATTTCCAGCC
GTAATGATTTTCAAGAATTTTCATTTTAACCTCTGCAATTGTGTCTGAAT
AAGAGACATGTACGACCGTCATCAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042257	XLOC_042257	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00067686-exon-scaffold_472-1575043694:119304..119359	TCONS_00067686-exon-scaffold_472-1575043694:119304..119359	Clytia hemisphaerica	exon
TCONS_00067686-exon-scaffold_472-1575043694:114435..114951	TCONS_00067686-exon-scaffold_472-1575043694:114435..114951	Clytia hemisphaerica	exon
TCONS_00067686-exon-scaffold_472-1510915933:119304..119359	TCONS_00067686-exon-scaffold_472-1510915933:119304..119359	Clytia hemisphaerica	exon
TCONS_00067686-exon-scaffold_472-1510915933:114435..114951	TCONS_00067686-exon-scaffold_472-1510915933:114435..114951	Clytia hemisphaerica	exon
TCONS_00067686-exon-scaffold_472-1491911889:119304..119359	TCONS_00067686-exon-scaffold_472-1491911889:119304..119359	Clytia hemisphaerica	exon
TCONS_00067686-exon-scaffold_472-1491911889:114435..114951	TCONS_00067686-exon-scaffold_472-1491911889:114435..114951	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_472	supercontig	scaffold_472:114435..119359 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.130483	0	0.298019	0.311594	0	0.117312	0.236297	0.352484	0	0.0367999	1.55538	0.230778	0.646432	2.21885	0.370569	1.12987	0	0.659514	0	0	0	0.129286	0.245984	0.186787	6.70154	3.3402	0.208874	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00067686 vs. Swiss-Prot (Human)

BLAST of TCONS_00067686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00067686 (transcript) - C. hemisphaerica