TCONS_00067679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067679
Unique NameTCONS_00067679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2020

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067679 ID=TCONS_00067679|Name=TCONS_00067679|organism=Clytia hemisphaerica|type=transcript|length=2020bp
TTTAGTGTGAATGATGATCTCTGCTTGAactacaaaaattcaaaacaaac
caataGATCGTACTCGGAAGTGTACCCTGACGTAATTGATTTTACTTGGG
CGTCTTGTTTCGTCAGTGTAACAAAATGGcgaatttttaaataaatattg
TTGACACTTTAAATCTATTTACATCATCGCTATCTCTATTTTACTGGTAA
ATCTTGGGACAAAAAATTGATCATCGAACATTGGACATTCTAGCAGGGCT
ATGATTTTTAACCGTTGAAACACTCAAGAcattattttgtaaataaaaag
agGGTGATATCCCACTGTTCGATTTAAAAGGACTTTGTTTTTGAAGATTA
TTGTACGATATTTTTGGCCACAATGGCAAGCAAAGATGATGAATATGATT
ATTTGTTTAAAGTTGTTCTGATTGGAGATTCTGGTGTTGGTAAATCTAAC
CTTCTCTCGCGATTCACACGAAATGAATTCAATCTGGAATCCAAGTCAAC
AATCGGTGTTGAATTCGCCACAAGGAGTATCCAAGTTGGTGGAAAAGTTA
TAAAAGCACAAATTTGGGATACAGCTGGTCAAGAAAGATACAGAGCCATT
ACTAGTGCATATTACAGAGGAGCTGTTGGAGCTCTATTAGTTTACGACAT
CGCAAAACACATAACTTACGAAAATGTCGAAAGGTGGCTAAAAGAATTGC
GAGATCACGCTGATGCAAATATAGTTATTATGCTGGTCGGAAACAAATCT
GATTTGAGACATTTAAGGGCAGTACCAACAGAAGAAGCCAAAGCTTTCGC
CGaACGAAATGAATTATCCTTTATCGAAACCTCTGCGTTGGATTCCACTA
ATGTCGAAGTAGCTTTTAGGAATATTCTGGAAGaaatttaTCACATCGTC
TCACAAAAGCAAATTCGTGACGCTAACAGTTCTTCTGGACCACAACCGAA
CGAGTACACTCAAACCATCCAAGTTGCTCCTACCGAATCAGACACTAAAA
AACAAGTCAAATGTTGCCAATAATAAAAGACTTGAATACAATTCCTCGTG
ATTCTGTTTGGACCTAAATTCAATCAGTCAATCTTTAAACTTTTAGGTTC
CAAAGGTTGCTTTGGTGCAATTTTGAGCGATCGTAAATTCAATTTTacca
tttgaaaaaagaattgctTGAAATTCTTACACATTTTTCCATTTGAAAGC
TGTAGCGACTGGTAGACTGAAGAGGGCTGCAAAATATTGGGAAACTACTC
TTCCATCAAGCAAAACACCTATCGTTTAATTTTAAATACTTCGTGATTCg
caaatttttttctgtttttgtttcttttctttttttcaatcgaATTTTTT
ACACgtcactttttataagaaacaaaaagaattgCTTACGTTAGTTGTGA
ATATCTAATAGAAATTATTATTTCTAGTACAGTagtaatttaggctattt
tttccCTTTTCTTTTAGATAAAGTAAGCAAATTGAATCAAGTACTGACTA
ATAGAAATCTCCACATATTCGCTGTATTATTTTAAGTTTTGTTCCGTTTT
ACTaatttatgttaatttcagGTACTTGATTCTTTATTTCGTCTGTCGAA
GCGTTGAAAATCTGCTCATTCATCAATTAAACCACACCCTTCTCAAAATG
TAATTTAAAATTCGGAGATGCCTTGgaatttttacaagatgcttaactga
ttggttatttttNttctcaatcgcgaaattaattccgtgaaacttttgaa
atcggctcattcgcgaaatttgccattttgaaactctgattcgcgaaatt
aaattccgcgaaaatttcttccctttatAAGGTATTagagagtttatgta
tgtgtgtttttcagcgacggagacggtaaggttctaatttgagtagatca
tgaccaactgaggacgacggtaaatcagcacttttaccgtcctcgatttt
gcggggcggaattgcgggtttttccaaatcgcttcagtcactctaccgtc
ctcaaaagtgcaaatacata
Run BLAST on NCBI

transcript from alignment at scaffold_472:23006..34554-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067679 ID=TCONS_00067679|Name=TCONS_00067679|organism=Clytia hemisphaerica|type=transcript|length=11549bp|location=Sequence derived from alignment at scaffold_472:23006..34554- (Clytia hemisphaerica)
TTTAGTGTGAATGATGATCTCTGCTTGAACTACAAAAATTCAAAACAAAC
CAATAGATCGTACTCGGAAGTGTACCCTGACGTAATTGATTTTACTTGGG
CGTCTTGTTTCGTCAGTGTAACAAAATGGCGAATTTTTAAATAAATATTG
TTGACACTTTAAATCTATTTACATCATCGCTATCTCTATTTTACTGGTAA
ATCTTGGGACAAAAAATTGATCATCGAACATTGGACATTCTAGCAGGGCT
ATGATTTTTAACCGTTGAAACACTCAAGACATTATTTTGTAAATAAAAAG
AGGGTGATATCCCACTGTTCGATTTAAAAGGACTTTGTTTTTGAAGATTA
TTGTACGATATTTTTGGCCACAATGGCAAGCAAAGATGATGAATATGATT
ATTTGTTTAAAGGTAATTGGACTTATCCATCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAGGG
TAGCATTTAAACCGCAATTTGCTAGTTACTAAAATTATATAAGAAATTGT
TTTAGTGTGAATGATGATCTCTGCTTGAACTACAAAAATTCAAAACAAAC
CAATAGATCGTACTCGGTAGTGTACCCTGACGTAATTGATTTTACTTGGG
CGTCTTGTTTCGTCAGTGTAACAAAATGGCGAATTTTTAAATAAATATTG
TTGACACTTTAAATCTATTTACATCATCGCTATCTCTATTTTACTGGTAA
ATCTTGGGACAAAAAATTGATCATCGAACATTGGACATTCTAGCAGGGCT
ATGATTTTTAACCGTTGAAACACTCAAGACATTATTTTGTAAATAAAAAG
AGGGTGATATCCCACTGTTCGATTTAAAAGGACTTTGTTTTTGAAGATTA
TTGTACGATATTTTTGGCCACAATGGCAAGCAAAGATGATGAATATGATT
ATTTGTTTAAAGGTAATTGGACTTATCCATCTGTGACTGTATCATATCTG
TGACTCTCCACCATTTGCAAGTTAGAAAACCTGTGCTCACCTTCAGCAGC
ATATTACAAAGGGTTGCAACTTACTGTTTTGATGTTTGAAAAAGTTTTTG
TCTGGCAGTATGAAGTCTGAGACATTCCTCAAGTTAACTTTAAGTTTGGT
CATTGCTAGGACTGCTAGACTGTAATAAAAGAATCCTTTGTGTACCGCCA
TGGTAAAAGATTGCACTGAACAGGAGGACAAAGATTCAACTGCCACTTTT
CTAGCAGAAAAAGACCAAAACTTTGGGTAGTTGAAATTTTTTCAACCGTA
GTCAACACAAGATTTTTTTGTACCTCTTCTCTTGTAAAAATCCTTTCCGA
ACCATGTCTGTCAGATATCAAGGAAAAAATTACAGTAGCCGAAAATAAAT
TTCCAAAAAAGTCAGTGGGTTCTAGTTCCTAAAAGGAAAGAAATTTAAAA
TATTAATATTCCCTCTTTAATGAGCTCTTCCAGTGAAAGTCTATTACAGG
GGGTGGACAACAGCAGAATTCCGAGGTAAAATGTTTCATGAAATTCCTGG
ATTTCCAATATTAACAAAAGCAATTGGAACTCTTGGATTTCCCACATAAA
ATAGATTTTTTGGAATTTCTAACAAATTCTATGGAATTTCCAAAGGTTAA
ATTAAAAATTGAGTGGAATTAGTGGCTGAATACACCTTTCCCGTAATTCA
AATTTCTCAGAAATGGCCTGGGAAAATGTGCGCTCCACCGTTGTGTATAA
AATTGTTTTTGCGTTTTTTACCTGCGGGGGTTAGGGAAAGTGGGATTTGA
GCCTCTAACTTTTGACAGCGACCTTCTTTTGGCAAAATATTTTCAGGGTG
GTATAATATCATGAATAGATCATGAACATACTAAAATTTTGAGGGGATTT
TGTTTGACAGAACTTAAGAAAAGCTAAAAAAACCAACTTTCCCTAAGGGA
ACACAGGTAAAAACGGGTTTGTTTACCTCCAGAGACTAAACGGTGGAGAG
CATCAAAATAATGCGCGCGCATTAGTTTTAAGAATTACGGGAAAGGTGTA
TTGCCGTGGTGTAATTCCCTTAGAAAGTATGCAAAACATATTAAGTATTA
ATAAGTATTAATATAAAACTTACATGCATAATTGGCATTATATTAAAGTG
TAATTTTGTAAAAGAAAGATTAAATTTGCTTCTCTTGAAAACTAAAACTA
ATTATATTCGCTCATCTCTTAGAACTTAAGCCCTTCAAAAATCCATAACA
TTAGACATAAACTCAAACTGAAAAATCACCAGCGAAGGTAAAAATTAATC
CTTATTCGGCTGACGGTAAATTATTCTCCTGGGAATAGAGCCGCCAAATG
ATCAAATCAAAACATTGATAATATGTGACATCATAATTACTGCTTTTCAG
TTTGGGTGTTGTGAAAGTTTGATGTGTGTACTCCGTCTTCGTGGAATTTC
TTAATGGCATGAAAACAGAATATGCTATGTCTTTAAGAACAAATTTCTAA
AAGGCTTTTATTGTTCTGTAAATATTTCTTTTTGGATTAAGGAATTCCAT
CTTTTATTGTTCTAATGATTATAATCTGTTATAATATTTATTTATAAGAT
GCTTTATTGTCTTTTTAATCTTTGCGTAAACTTGCATATGTTTTGCATAC
ATTCCAACTAAATCCAACCACAGCTTTTTGTGTTCCTCTATTTTTGCATA
CAATTCAAGATGGCAGATGGAAAGGCGAAAAGGTCTATTCCAGGCCTGAT
CAATCGAACTTGTCGAACGAATCGAACTCTGAGATTTTTTAAAAGATTGT
TGAGTGTTCAATTAAGTTCGATCAATGGGTTTCAGCATGGTTTCTGCCCC
CTCCCCTTAAAAAGGGGGAAGCAAAAAAATTACCTTTTTAAAAAGGGGGG
ATATTTGTAATTTTTTTTAAATAAGGGGGATCCTTTATCAAGGGCTGCAA
GAATGAAAAGAAGGGGGACTAAAATTTGAAAATTGTTGATTGAATTTCAG
ATGTTATGTCTTTGGTTTTATTGCAATAATTTTCTTGATTTGATAATATC
TTCTTTCACATTTTTGTGCTCACAATCTCATGCCCACTTTTTTGCAGACC
ATGCTATATTGAAACTTATGCATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTG
ATTGTTTTGATTTACAGCCGCCATCTTTATAGCATAACAACAAAGCTTAT
TAGCAGGCGTTCATGCGTGAGCATGATTTTAGGAATGACAAAAGAACATG
TGTCAATTCAAAGAAATTATCTGCTGAATTCGGGTACCTAACTCAAAGCA
ATTTTTCAAGGGGACCTAAATTGCTGGGGGCACCATGCTCAATGGGGGCA
CCTGAAAAGTGGGCTGAAACCATGTGCATATTAGAACAACTTTTAACAGA
CCAAACCAAACCATAAAATTAAGAAATAGTATTAAAGTATAAAATGTAGT
AAAAAGTAGTATAAAAAGTAGTATTAAAATGATTATTTCTGTGAAAGATT
ATTTCTGTGACACATTTTTCACTTAATGCAAAATTAAAGTCTTTTTTATG
TTGACAAAAAATTTTGAGAATTTCTTGTTTGCAGCAAACAACTTTCCAAC
AGAAAATTTTTTCAAATTATAAATTTTTTAGATTTTTTGAGAAAAGTCAT
CCAAAAAGTTAAAAGAATTACAAAAATAGCTAAAATTTGCTAATTATACC
TCTTTGTACCTCTTTTTGGCTTTTGCTTGAACAGCTCATCCAACTCGTTG
AGTCCGATGCTTCGACATTTCCTTGAGGCTGTTGGAGTCAGCTTGCCTAA
GGTTAAAATAGTGGGCTAGCAGAGGTTCGTCCGGAACAGTTGTGAGGAAG
GTGTCTAAGTGTTTTAAAGTTATGTCTGAGATTTTACTTTCGACCCCCCC
CCCTGATTAGATAGTGTTTTATTAAGGTGTTTTGAGGGTGTAAAAAGTGA
AAACATTTTCTTCGTCTCCCAACCATGGTGGGCGACATTTTTTTCAAAAA
TCTTGGTCCCCCACTCAAAATGGCTTGCATCCTCTCTTCCCTCTCTCTAT
TGTAAAAAATTGTTTGCTGAAAGGTAGAAAAATTCTCTTGAAATAGTTGC
TTGACATCATTGATCTTTGACATTTGCAGCAGAGACTTATTTTTACAAGT
TCTTTCACATCCAAAATCAATGGGGGGATGACACCTTCCTAAAAAATGAA
GAAGGGGTATCAGAAATTTTCATGAAAAAGGGGGGATACTTTATAAAGAG
GGGGCATACATACATATACATTGTAGATTATTTTCAAGCACTGTTATGAA
ATTTAGTTTTCTGTTAGAATAGTCTTTGTCAAAAAGAAGACAGAACTGTT
TGTTTTTTTTGTATTTTGTTTGTTATTTTATTTTTGTTGGACCACTTACA
AGTCCCAGGGTGTCTACGGGACCTTGAAAACCTTGAAAATGAACCACCTA
ACCTTGAAAACCTTGAAAACTATCAATTTTCTGAGAAAAACCTTGAAAAC
ATTGAAAAATCGTTAAAAACCTTGAAAAGCGCTATCCAGTCATTCGAAAA
GTAAGAATAAGTAAAAAACCACCTGCGGCGCTAAACCTTTATAACATTTA
GAGAATTCCATATTTCCCGATTCTGTTGCGATTCTGTTGCAACGAATGCA
ACATATTCTTTTACCATTAGCTGAGTTTTTGTCACTAATTTTTCGTTCGC
ATGAGCCCTAAGAAATTGTTCCCCAATTTTCAAATCGCTTCAGGGCGTCT
GTGGAATAATGGCCGTTCATCAATAAAATTTTGAGGATTCCTTAAAACAA
CTCGTTTGGCAATTGATTTTTGTAAAAAACAAAATCAAAAACAAGGCGTT
TTTTGGCCATTTGAAAGAGTCAAAATCAAGATTTTCTCTCGTCTGCGCAA
ACCATGGTTGCACCTCTTCGGTCACTGTAAACAATTGGTTTTGCTTCTAA
TTCTTTATTTCTACAGTTGGAAGACTAGGGAGCTGGAGTTCTTCTTTTTC
TGGTATTGTTCTCGAGAGGGAGTTAGGAATTTAACTGTGGAAGTAATTCC
CCGGGCACCCAAAGTAAATAAATTGTATTTGCTGTCCTCTATTTTTCTTT
CACCTACCACTCTGAAAAAAAAAATCCTGTAAAGAGCCATATCAACTGAG
TATCAAAAAACCTTGAAAAGTGCCAAAGTTTTTGCCAAAAAACCTTGAAA
AAACACTTAAAAATGACCAAAAAAACCTTGAAAAGTGCCAAAGTTTTTGC
CAAAAAACCTTGAAAAGTGCCAAAGTTTTTGCCAAAAAACCTTGAAAAAA
CACTTAAAAATGACCAAAAAAACCTTGAAAACCTTGAAAATCTCAAGAAA
AAAAATCTGTAGACACCCTGAGTCCTCTAAATATAGCCATGTGTTAACTT
TGAAGGCCCTTTTGAAGAGAGACAATGATCTGAAAAATAATTTGGGTCTG
AACCAAAGAATTCTTCAAAAATCTCAAAACACACAAATTGAACTTTCATA
GCAAAATGAGGTAAGACAAGACCTTAATTTCAGTGATTTAGGTGTGTGAT
AAGGAGTACTATACACAACTTTTAGTTGTGAAACTAACTTATAGAGTGTG
ATTGATTGCACTCCACAGACATTTTAGGTGTGTGGAGGTGTGCTTGTGCT
ATCACTCGCCTCATCAAATGATGCAGCCTGTTTTACACTGTCTTACGCTT
ATTAAATTCTTTTAAACTTAAAAAAAATATTTTCCTACAAAGAAAATCAA
TGAACCACCAAGTAAAACAAACATTATAACGAAAAATTAAAAGTTTAAGA
AAAAATTGGAAAAATCTAAGAACGTAAAAAAATATATTTTGTGGTAGGGT
AGTGTGGTAGTTTTTTTTTGTCACCCGCATTTCATTTCTTTTTCTTATCC
TTGAAAAAAAAATTCATGAGGTGGTGAGTTTTGTCATTGTAATGTTTAGA
CATTTTATTCTTTTACTGCCTAGTACTATGTTTTATATGGTAGGCTAAAT
TGTGATTTAAACTCATTTAAACAGTTCCTTAGGTTACAAACTTTTTGAAT
AAGAACAAATAAATTTTGACTGAGCTATTTTTTTAAAAACGTTCTTGTGT
TCTTATAGAATTGTTCTTAAGAAAGTGTGTACTTTTTCTTTACATTGACA
ATTTTAGGAAAGTATGAATTCATCTTGGCAATGAACTTATTTTACCATTA
AAATCGATCTTATAATTTCAACCGTTAAAACTTTTGATATTGTGTGTGAT
TTGGAGTTTAAGCTAAATTTAGTTTTTCATCTTTCAGTTGTTCTGATTGG
AGATTCTGGTGTTGGTAAATCTAACCTTCTCTCGCGATTCACACGAAATG
AATTCAATCTGGAATCCAAGTCAACAATCGGTGTTGAATTCGCCACAAGG
AGTATCCAAGTTGGTGGAAAAGTTATAAAAGCACAAATTTGGGATACAGG
TACTATTGTTGTTTTTTTTGTAGCACTATTAGAGGAGCATTAGTATTTCA
GAAATGTACTGAAGTGTACTGATCGTGTCTATTGAAAACTTCTTTGTTTT
AGCTATAATTTGGTCGTTACAAAAAGTTCAGAAAAAAACGGCTCGCCATG
CGAAGAGGGCTGGTTTCTATATGCTGTGTTTATAAAAGTGGTTTTATGTT
TTTCGTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGCCGTTATATCA
TTAGAATCGCTAGAAAATTCTGAGCAAGAAAATATAGGTATCTTTTGGTA
TAAAAGAGGTCTCCCCAAAATATAAGCCCCTAAAGTTTGCGCATAATTTG
ACCTGAAACAAAAGAATTTCGTCATGCCACGCTAATTATACAACTTTTTT
TAAACAACAACAAAAGAAATCCATTAGCTCGAAACAAACTCCCTTAAGGG
CAAAGGACCTGGTATATGACAAGCTGTTTGTCTATTGTTCTGAAGAAGCT
GTTTTTCCATCTCTTTACATTTCTCTGCTCCCATTCTTGAAAAAGGATTA
CCTGTTTTATTTTTTTCCGGTCTTAGAATTTTCATATTTTCAAATTTGGC
TAGTTTTCTTTTGGCGTCTTTTTAAACGTTGTATGTCTTTCAATTTCAGC
TGGTCAAGAAAGATACAGAGCCATTACTAGTGCGTAAGTAAATTATCTAC
TTTGTTTTTAGTAGCATTGTATTTTAAAACAATAATTTATTACCAACTCA
GACCTTTTCCTCGTGGAGAAACTTTTGGTCACCTTGCCAAAAGCTTGTTG
CACACCTGCTGTCGCTGACTGTGTCACTTTCCCGAACCTTTATCCGTATG
CTAATTAAAGCAGATACTGACTAACTTTCTTTATTATTTTCAGATATTAC
AGAGGAGCTGTTGGAGCTCTATTAGTTTACGACATCGCAAAACACATAAC
TTACGAAAATGTCGAAAGGTGGCTAAAAGAATTGCGAGATCACGCTGATG
CAAATATAGTTATTATGCTGGTCGGAAACAAATCTGATTTGAGACATTTA
AGGGCAGTACCAACAGAAGAAGCCAAAGCTTTCGCCGGTATGTATATTTT
CTTTTGGAAATTCAGCTCCTAAGCTTTTGTTTTAAAATTAAATCAATGGC
AAAACGAGGAAAGACTGTCTAAAACTGTTATGTTGGATTTACAACTTGAT
TTCTTCGCTTTTTCAGTAGCTTCTCAACAACTTTAGCAACCAAGTTTTTT
TATCGGAAAGATATTGCATCTTTTTATGGCACATTTTATGTTGAATTTTA
TTTATTTGTTTTTCCTTTTTAGAACGAAATGAATTATCCTTTATCGAAAC
CTCTGCGTTGGATTCCACTAATGTCGAAGTAGCTTTTAGGAATATTCTGG
AAGGTAAGAGATTTATCTCGAAAATACGTAAAATACAGTTATGTTCTGAC
GGGTACTCGTATAATATGAAGTTGTGAATACATATTTGGTCGTGACCTAA
TCTCGACTTCTTTAAGAATAATTCTGATAATCATAACCCTGCATAACCAT
TTTAAAACCTTGACATTTTCATTTTTCTAGAAATTTATCACATCGTCTCA
CAAAAGCAAATTCGTGACGCTAACAGTTCTTCTGGACCACAACCGAACGA
GTACACTCAAACCATCCAAGTTGCTCCTACCGAATCAGACACTAAAAAAC
AAGTCAAATGTTGCCAATAATAAAAGACTTGAATACAATTCCTCGTGATT
CTGTTTGGACCTAAATTCAATCAGTCAATCTTTAAACTTTTAGGTTCCAA
AGGTTGCTTTGGTGCAATTTTGAGCGATCGTAAATTCAATTTTACCATTT
GAAAAAAGAATTGCTTGAAATTCTTACACATTTTTCCATTTGAAAGCTGT
AGCGACTGGTAGACTGAAGAGGGCTGCAAAATATTGGGAAACTACTCTTC
CATCAAGCAAAACACCTATCGTTTAATTTTAAATACTTCGTGATTCGCAA
AGTTTTTTTCTGTTTTTGTTTCTTTCNTGAAAATGTATTTTGTCATCTTT
TCGAGGCTTTTAGTTACCAAATCACTCCACTTTGCACGCCTATCTTCTTG
ATAACTTTGAAATTGAGCCCCGAAGGGCTAAAGATGAATTTTCAACCTTT
CTCAAGCAAGAAAAAGTGAAGCCTTAAGATTTTGTGAAGTAACAAATTTT
ACATACCATTCTCAAGGGCAAAGGACCTGGTACATGAAGAGCCCTGTTTT
CAAGAAGCTGTTTTTCCATCACATTACACTTCTCTGAACTCGCGAAAGTT
TGTACGCCTAAAGTTACAGAACTCACCAAAATGGCTAAATCGCGAAATTC
GATTTTTTTGGAGGAAGAAGACGGCGACCAAGTTTAATAATGACTTATCA
TAGAAACATTCATATTTGATGTTATTATTTTGTTGTGAAAGTTAATGTTA
ATGTGACTGAAATATGTCTTGCAATCGATGAAAAATATGAAAAACATTTT
CTCTGTAAAAAAAATTATTTTGAAATTTCTCAATCGCGAAATTNATCCAA
GTTGCTCCTACCGAATCAGACACTAAAAAACAAGTCAAATGTTGCCAATA
ATAAAAGACTTGAATACAATTCCTCGTGATTCTGTTTGGACCTAAATTCA
ATCAGTCAATCTTTAAACTTTTAGGTTCCAAAGGTTGCTTTGGTGCAATT
TTGAGCGATCGTAAATTCAATTTTACCATTTAAAAAAAGAATTGCTTGAA
ATTCTTACACATTTTTCCATTTGAAAGCTGTAGCGACTGGTAGACTGAAT
AGGGCTGAAAAATATTGGGAAACTACTCTTCCATCAAGCAAAACACCTAT
CGTTTAATTTTAAATACTTCGTGATTCGCAAAGTTTTTTTCTGTTTTTGT
TTCTTTTCTTTTTTTCAATCGAATTTTTTACACGTCACTTTTTATAAGAA
ACAAAAAGAATTGCTTACGTTAGTTGTGAATATCTAATAGAAATTATTAT
TTCTAGTACAGTAGTAATTTAGGCTATTTTTTCCCTTTTCTTTTAGATAA
AGTAAGCAAATTGAATCAAGTACTGACTAATAGAAATCTCCACATATTCG
CTGTATTATTTTAAGTTTTGTTCCGTTTTACTAATTTATGTTAATTTCAG
GTACTTGATTCTTTATTTCGTCTGTCGAAGCGTTGAAAATCTGCTCATTC
ATCAATTAAACCACACCCTTCTCAAAATGTAATTTAAAATTCGGAGATGC
CTTGGAATTTTTACAAGATGCTTAACTGATTGGTTATTTTTNTTCTCAAT
CGCGAAATTAATTCCGTGAAACTTTTGAAATCGGCTCATTCGCGAAATTT
GCCATTTTGAAACTCTGATTCGCGAAATTAAATTCCGCGAAAATTTCTTC
CCTTTATAAGGTATTAGAGAGTTTATGTATGTGTGTTTTTCAGCGACGGA
GACGGTAAGGTTCTAATTTGAGTAGATCATGACCAACTGAGGACGACGGT
AAATCAGCACTTTTACCGTCCTCGATTTTGCGGGGCGGAATTGCGGGTTT
TTCCAAATCGCTTCAGTCACTCTACCGTCCTCAAAAGTGCAAATACATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042254XLOC_042254Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067679-exon-scaffold_472-1575043694:34143..34554TCONS_00067679-exon-scaffold_472-1575043694:34143..34554Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1575043694:27206..27367TCONS_00067679-exon-scaffold_472-1575043694:27206..27367Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1575043694:25922..25955TCONS_00067679-exon-scaffold_472-1575043694:25922..25955Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1575043694:25518..25711TCONS_00067679-exon-scaffold_472-1575043694:25518..25711Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1575043694:25202..25282TCONS_00067679-exon-scaffold_472-1575043694:25202..25282Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1575043694:24604..25024TCONS_00067679-exon-scaffold_472-1575043694:24604..25024Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1575043694:23006..23721TCONS_00067679-exon-scaffold_472-1575043694:23006..23721Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1510915933:34143..34554TCONS_00067679-exon-scaffold_472-1510915933:34143..34554Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1510915933:27206..27367TCONS_00067679-exon-scaffold_472-1510915933:27206..27367Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1510915933:25922..25955TCONS_00067679-exon-scaffold_472-1510915933:25922..25955Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1510915933:25518..25711TCONS_00067679-exon-scaffold_472-1510915933:25518..25711Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1510915933:25202..25282TCONS_00067679-exon-scaffold_472-1510915933:25202..25282Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1510915933:24604..25024TCONS_00067679-exon-scaffold_472-1510915933:24604..25024Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1510915933:23006..23721TCONS_00067679-exon-scaffold_472-1510915933:23006..23721Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1491911889:34143..34554TCONS_00067679-exon-scaffold_472-1491911889:34143..34554Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1491911889:27206..27367TCONS_00067679-exon-scaffold_472-1491911889:27206..27367Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1491911889:25922..25955TCONS_00067679-exon-scaffold_472-1491911889:25922..25955Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1491911889:25518..25711TCONS_00067679-exon-scaffold_472-1491911889:25518..25711Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1491911889:25202..25282TCONS_00067679-exon-scaffold_472-1491911889:25202..25282Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1491911889:24604..25024TCONS_00067679-exon-scaffold_472-1491911889:24604..25024Clytia hemisphaericaexon
TCONS_00067679-exon-scaffold_472-1491911889:23006..23721TCONS_00067679-exon-scaffold_472-1491911889:23006..23721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:23006..34554 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
229.606	225.73	386.206	380.703	0.0538693	0.708465	5.42927	12.2232	2.6626	2.31358	2.55657e-05	0.0885012	1.59565	1.25704	1.04619	0.930188	5.25571	0.0157069	1.73039e-05	1.23039	12.5899	13.5104	98.167	101.924	1.95554	6.88067	38.5565	38.2459	59.76	93.5188
Blast
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BLAST of TCONS_00067679 vs. Swiss-Prot (Human)
Match: RB11B (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 348.977 bits (894), Expect = 1.822e-115
Identity = 172/204 (84.31%), Postives = 182/204 (89.22%), Query Frame = 1 
Query:  373 MASKDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVGGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHITYENVERWLKELRDHADANIVIMLVGNKSDLRHLRAVPTEEAKAFAERNELSFIETSALDSTNVEVAFRNILEEIYHIVSQKQIRDANSSSGPQPNEYTQTIQVAPT 984
            M ++DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH+TYENVERWLKELRDHAD+NIVIMLVGNKSDLRHLRAVPT+EA+AFAE+N LSFIETSALDSTNVE AF+NIL EIY IVSQKQI D  ++    P      I V PT
Sbjct:    1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIAD-RAAHDESPGNNVVDISVPPT 203
The following BLAST results are available for this feature:
BLAST of TCONS_00067679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB11B1.822e-11584.31Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
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