TCONS_00067664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067664
Unique NameTCONS_00067664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length846

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067664 ID=TCONS_00067664|Name=TCONS_00067664|organism=Clytia hemisphaerica|type=transcript|length=846bp
TTTAGGAGACAAAATATAATGGAACCTAATGAATACAAACTACATTTCTT
AAACATTGAAGTCTTCAAAGATCCTAAACGAGAATTAGCTTTGATATTCA
CTATACAGTATGCATTAGAGGCATTCAATCGGATACGTGATCACGAATCT
AGAGTCAATTACCATTGTTTATTATTCGGTAAAATCTCCGAGAAAGATAG
AGTGTTCACAGAAGGATCATTACCGCTTTGTTTTTTGATCGGTGCAACGC
AAGGTTTTGTCATTTTGTTCTCCTTATATCTGTGGTATGAGATACGCAAG
AATCGTTCAGTCTTTTGGGCGACAACAGTTCGGAAAAGGATATGCTGGGG
AATCTTTTTAACATACATGGCTGCATTATATACATTAGCGCATCAAGGTC
TACGTGCTGTTTGTAACTCACTGTCTGCTCCAAGcTGTCGTGACGGTGTT
GTGTTATATATCGACTTCAAAGTGTTCAAACCAAAATACCTGAATGCATG
GTCTTTCTTCTCTCTATGGAACACCATACTgGAAAGtgcacaaaaaagtt
ttatatcgCTCGCCATCTTTGCCTTTCTTAACATTTCAAAGACACCACTG
GAAGAACGGCTACAGATGGTATTTGAATCTTCTTCTAATTTCTTGATTAA
TTGTTTCTGTTCCAATAGTACCAAcacaaaaatttccaatttaGAATGTT
ACATTTAGGATAGGCGAATTTAATGAATTTGATcttgtttttcgaaaaat
gacaaaatattttatcctttgtagttcaaaaattgttttaaaatttatga
ctatttttttagatattctATGTTAAATAAGTTTTCAAGGGATAGT
Run BLAST on NCBI

transcript from alignment at scaffold_472:337658..340110+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067664 ID=TCONS_00067664|Name=TCONS_00067664|organism=Clytia hemisphaerica|type=transcript|length=2453bp|location=Sequence derived from alignment at scaffold_472:337658..340110+ (Clytia hemisphaerica)
TTTAGGAGACAAAATATAATGGAACCTAATGAATACAAACTACATTTCTT
AAACATTGAAGTCTTCAAAGATCCTAAACGAGAATTAGCTTTGATATTCA
CTATACAGTATGCATTAGAGGCATTCAATCGGATACGTGATCACGAATCT
AGAGTCAATTACCATTGTTTATTATTCGGTAAAATCTCCGAGAAAGATAG
AGTGTTCACAGAAGGATCATTACCGCTTTGTTTTTTGATCGGTGCAACGC
AAGGTTTTGTCATTTTGTTCTCCTTATATCTGTGGTATGAGATACGCAAG
AATCGTTCAGTCTTTTGGTAAGAACCAACAATTTTGTTTTATAGAATGAA
AGCATGTCCCCCGAAAAAGACATTTTGCTTCATTGATACTCAAAGAAAGA
CACACAATTTTGAGTATCAAGGAACCAAGTTGTCTTTTTTCGGACttgtt
ttggtttttattttcccTGATATTATCAGCTGgttatttctttgttttat
ggtaCCTTTTGAACTAAATGTCGCGATTTTTTGAGCTCGCCAAAGTTTAT
ACGCCTAAAGTTAGTTATTTCATCGAAGGTTACAGCCTCTATAAGGTAGC
TCGTTGGAGTCCAAAAGCGCCGTATTTTTGGGGAGCGTATAACTTTCACT
TCTAAGCTACAAGATTTAGcagaaatatttttctgaatcGAAAGCTGTTG
CGAGTTGTTCAATAGTTTCGCATATGTAGTTTGTGTACCTGAAAAGCATA
TACGATACTACTAGATTTTTTGTCGATACTCAATTTTAagataattttct
tttcaattttgtaCAGGGCGACAACAGTTCGGAAAAGGATATGCTGGGGA
ATCTTTTTAACATACATGGCTGCATTATATACATTAGCGCATCAAGGTCT
ACGTGCTGTTTGTAACTCACTGTCTGCTCCAAGGTAATCTTTTAACCTCC
ATCAATATTTGTGAACAAAGTTTCTTTAAATCTTCAACCTCATCCCTGTG
GGCCATTTTTTAGATGTTTATGGCGTGGATTTTCGTACTTTTCATCCCGA
AAAACTTATCTCATCTATACATAAAGTATGTTCAAATCGGGGAGACCGAC
CTTTTTTCGGATGGAGTGGCGGGATAgactttttcatgaattacgtaACG
TTTAACCTCTGACTCGTCTTGAAAcaattaccaaggtgattatgtccctt
gagacaatCATTTTTAACTAAAAAGAGTGCACCTCTGAGAAATATCGGTC
GAGGATAAGTTGTCACAGCATTACTTCGAAAACTTGTGGCgcaatttatg
aaaatgtcaaTTCGACTAAAAtctgaatttcgaaaataagGTCGACTGTC
AGTGATAAATGAGGTTAATTTAGTCTCGAAATAcgtaatttagaaaaatt
atcgGTTTGAATTTCGGAAAGAGCGGAagaaagtctaattttctaatttt
ttttttgacgaaatCTATTATTTCGAAGAAGATTTCAATGACGGACAGAA
ATGATATAGTTTTTAACAAGTgacattttccttttttagcTGTCGTGACG
GTGTTGTGTTATATATCGACTTCAAAGTGTTCAAACCAAAATACCTGAAT
GCATGGTCTTTCTTCTCTCTATGGAACACCATACTggtaatttattcaaa
attttatttttttcttcgtttggggataccttaagggaactaattttcgc
ggtgcGAGGGTACTAATTTGGCgcatttttcaattaatttcgcggatgac
tcAAATTTTTAGTCCGCATAAGTGTTCCTGTCGCATACCAGACAAATATT
TCATACCAGGACAGTATCTGCCAactgttatattatgctgatataagcaa
aaaatgtttttcttttccgctttctgaccaatcttgctccacatccgtta
aaaagaagaattatgggcctaaaaaaacttttatttcttAGATATTTTCC
TgcaaactgaaaataaaaatgatgaaatctttGTTCACAAGGAAATCTTT
GTTCAAAATATACTATTTTTTATTGTGTctaaattttttatataagtAAT
TCTTCATTTATCTTACCCtttggaaaaaactttgacaaattatttttgaa
cctaccttgttaatttttattattttaactaTTTTCAGGAAAGtgcacaa
aaaagttttatatcgCTCGCCATCTTTGCCTTTCTTAACATTTCAAAGAC
ACCACTGGAAGAACGGCTACAGATGGTATTTGAATCTTCTTCTAATTTCT
TGATTAATTGTTTCTGTTCCAATAGTACCAAcacaaaaatttccaattta
GAATGTTACATTTAGGATAGGCGAATTTAATGAATTTGATcttgtttttc
gaaaaatgacaaaatattttatcctttgtagttcaaaaattgttttaaaa
tttatgactatttttttagatattctATGTTAAATAAGTTTTCAAGGGAT
AGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042249XLOC_042249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067664-exon-scaffold_472-1491911889:337658..337974TCONS_00067664-exon-scaffold_472-1491911889:337658..337974Clytia hemisphaericaexon
TCONS_00067664-exon-scaffold_472-1510915933:337658..337974TCONS_00067664-exon-scaffold_472-1510915933:337658..337974Clytia hemisphaericaexon
TCONS_00067664-exon-scaffold_472-1575043694:337658..337974TCONS_00067664-exon-scaffold_472-1575043694:337658..337974Clytia hemisphaericaexon
TCONS_00067664-exon-scaffold_472-1491911889:338474..338590TCONS_00067664-exon-scaffold_472-1491911889:338474..338590Clytia hemisphaericaexon
TCONS_00067664-exon-scaffold_472-1510915933:338474..338590TCONS_00067664-exon-scaffold_472-1510915933:338474..338590Clytia hemisphaericaexon
TCONS_00067664-exon-scaffold_472-1575043694:338474..338590TCONS_00067664-exon-scaffold_472-1575043694:338474..338590Clytia hemisphaericaexon
TCONS_00067664-exon-scaffold_472-1491911889:339197..339293TCONS_00067664-exon-scaffold_472-1491911889:339197..339293Clytia hemisphaericaexon
TCONS_00067664-exon-scaffold_472-1510915933:339197..339293TCONS_00067664-exon-scaffold_472-1510915933:339197..339293Clytia hemisphaericaexon
TCONS_00067664-exon-scaffold_472-1575043694:339197..339293TCONS_00067664-exon-scaffold_472-1575043694:339197..339293Clytia hemisphaericaexon
TCONS_00067664-exon-scaffold_472-1491911889:339796..340110TCONS_00067664-exon-scaffold_472-1491911889:339796..340110Clytia hemisphaericaexon
TCONS_00067664-exon-scaffold_472-1510915933:339796..340110TCONS_00067664-exon-scaffold_472-1510915933:339796..340110Clytia hemisphaericaexon
TCONS_00067664-exon-scaffold_472-1575043694:339796..340110TCONS_00067664-exon-scaffold_472-1575043694:339796..340110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:337658..340110 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.3206	22.9311	9.72725	8.13728	4.1518	3.68527	3.94231	4.45659	2.45685	3.57818	6.05075	3.17081	5.96875	3.3468	4.86108	5.14	2.93698	3.14576	5.96701	4.61781	2.56796	4.01225	16.595	14.2723	28.845	24.576	4.49934	4.04671	10.7346	7.37621
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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