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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067640 ID=TCONS_00067640|Name=TCONS_00067640|organism=Clytia hemisphaerica|type=transcript|length=910bp
ATTACATAGCACAATATTAGCGACTGGTTAACCAACTATTCAACAAAACT
CTGAACcatcaaagaaattttaatcAAGAAGAAACACAACAATGTCTATC
AAAGTGAAAGTTTCAATATACCACTGTCTACATATTGACCAAGGTCCATT
TTTTGAATCGAATGATTTTGAGTTGAATGATACTATTGCATATGTAAATC
AAAAGATTGCATGGAGAGGACTGGTATATGGTTACCCCATGGCCATGGTA
CTTTTATTTGATAACGTTAATTTTACAACACCTCTTCTTGGAGAAACTCG
ACTTTCAACTCTTGTTACATCAGAATCTGGAATTGACTCAATTCCAAGGA
CGAATaaattaaaactttattttgGTTTACGAAAATGTAAAGAGTCtatg
ttgattttgaaaataagaaaaacagttttctcGACAGATCATATCACATC
CTTATGGAGACTTACTGTTATAGCTTTTGGAAGTGGCCAGATAATTACGA
CAACATATACTAATGATCGCAATATCGCTGAAATCTATGACTATTTAGAG
TCCATTACAGGCTTACCGGCTGATAACCTGATATTACTTTTTGATGATaa
aacaccttttcaatatacaAACGAGTCAGTTTTTCATGAACATGTGTTCC
TAGATGTTATCGCTTGTTTCCAAGAAAACGAAAAACTGGAAAATATTTGT
CTCAAATATGGAATCAAACATCTGAAATCACTTAAGTTGAGATTCTTAAC
AAAAGAAGAAGAGTTGAACCCAAGAGAAATGGGATCAATCAAAGACATTA
AAAATTATGTTCATAAAACACATAATATTCCTCTCCATCAACAAAGTATA
CTTTACCAACATCAAGAGATTGAAAACGATTCGACCAAAATATTCGATCT
TTTCTCACAA Run BLAST on NCBI transcript from alignment at scaffold_472:109972..114332+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067640 ID=TCONS_00067640|Name=TCONS_00067640|organism=Clytia hemisphaerica|type=transcript|length=4361bp|location=Sequence derived from alignment at scaffold_472:109972..114332+ (Clytia hemisphaerica)
ATTACATAGCACAATATTAGCGACTGGTTAACCAACTATTCAACAAAACT
CTGAACcatcaaagaaattttaatcAAGAAGAAACACAACAATGTCTATC
AAAGTGAAAGTTTCAATATACCACTGTCTACATATTGACCAAGGTCCATT
TTTTGAATCGAATGATTTTGAGTTGAATGATACTATTGCATATGTAAATC
AAAAGATTGCATGGAGAGGACTGGTATATGGTTACCCCATGGCCATGGTA
CTTTTATTTGATAACGTTAATTTTACAACACCTCTTCTTGGAGAAACTCG
ACTTTCAACTCTTGTTACATCAGAATCTGGAATTGACTCAATTCCAAGGA
CGAATaaattaaaactttattttgGTTTACGAAAATGTAAAGAGTCtatg
ttgattttgaaaataagaaaaacagttttctcGACAGATCATATCACATC
CTTATGGAGACTTACTGTTATAGCTTTTGGAAGTGGCCAGATAATTACGA
CAACATATACTAATGATCGCAATATCGCTGAAATCTATGACTATTTAGAG
TCCATTACAGGCTTACCGGCTGATAACCTGATATTACTTTTTGATGATaa
aacaccttttcaatatacaAACGAGTCAGTTTTTCATGAACATGTGTTCC
TAGATGTTATCGCTTGTTTCCAAGAAAACGAAAAACTGGAAAATATTTGT
CTCAAATATGGAATCAAACATCTGAAATCACTTAAGTTGAGATTCTTAAC
AAAAGAAGAAGAGTTGAACCCAAGAGAAATGGGATCAATCAAAGACATTA
AAAATTATGTTCATAAAACACATGATATTCCTCTCCATCAACAAAGTATA
CTTTTCCAACATCAAGAGATTGAAAACGATTCGACTAAGATATTTGATCT
TTTGTTACAAAATGGAGTTTTGGATGGAGATTTGTGTTTTCACCTCGTCA
TTAGGAAAAAGCCATTTGAAATTACAGTCATGTTTCATCACCAAGGGCGT
ACAGGTGTTTCGGACCATTTGGTAGAGATTTGTGATTCAGACACAATAGG
AGAGGCTAAAATGAGAATACTCCGGCAATATTACCCTTGGAAGATTGAAA
ACATCCAAAGACAACTTGAGGATACAAACTCCGCTGTTTCATCAACTGGT
AGAGAATTTCCTTCTgagttttttcaatttcagaagaaaaacaTCACTTA
TTTGGACTGTCAGACTGTAGAAGAATGCAGATTCTTACCAGATCATGAAT
ATCAGATGAAAGAAAGCCTGTTGATTAGAATTCGTTTAGATTCTACTCAA
TCAGATGTAGGTGTTGTGCACTATACGATACCTAAAGATCATCTCTTGct
ttatcaaactttaaaagattttaagagaCAGTATGGAGTTTATCGTTGGG
AGCTCCATCTCCTGCCAGATCAAACGGGCGTGACTAAAAATCCTAAACAT
TGTTGGATGATTGAATCAATCGACGTGGACGTGTTTGTTGTAGATTACGC
TGTTATAAAGAGGCGATCATGTTATATAATGTAAAGTTAAAATTTATACT
TTCGATCTCTTCTCGTAAAGGAAGAGtagaaaaatatgatttttttagga
ACTTTTTTGGTGAATaattaaaatcgaaaaaagatTTATTGCTATAATGC
ATATTcagctttttttaaaagatgagTGACAAAATGTGCGAAAGAAGTAT
CAAATTTCATTAAGTTTGGGAATTTCctcaaaaaccaaaagtaaATTTCT
AGGTAAAAGTGAAATTATGTACAGATTCAAGACCTAATCATCGTGTGCGT
GTTCATTCAGCCAGTAATACAATGCTAATAGCAAGGTGTTCCTAGGGCGG
ACTATAACGATAACAGTGTGTCCATTCCACAAGGGAAGATAGTGGACGGT
GTAAACGAAAGTGACCTTGCTACTTGTATGACGCGATCAGTAGTgtggtg
ggtcgactaaaattcaggcaaactggggaggcaaaGTAAATAGCGAAGCG
AACACGAAAATGTTGGGTATTTTCTCTCCTTTTGTCCGAAAACTGCCATA
TATAAGGTGCAAAAGAGCAAAGGGGCGCCGGAATTAGTAATTAGAGGCGT
CTTTTTGCACCCTTTTTTATTTCGACTGTTTGAAAAACCTCTGCTGGGGG
GGGCCCTGCCAACACGCTACTGGATGCGATCAAATACCGTCGTTTTGTTT
GAGATTCTCATATCTgtactaagattcctttgccacttttctagcggaaT
AAGAACAGGACTTCGCatagttgaaaaataagcttcggAAAATTAGGCAG
TTTCGTGAGTAAACACAAcattttccgtacctttaggAACAAACCCTTTC
AAATCTCATGCTGGTTATCCCAGGAAAAATAGTGGGGAAGATTCtagaaa
agtgacaagaatcttagtgcggaaatgggaatcttatacagaACGACGGC
ATCAAATGATTCCTCGACGTATCATGTTCATGCGCTATGATTCTTTAGGA
GCCATCAAAGCCAATGTTGGCGGAATAAGTGAGCACAAAATAATTCAGTA
AAATGATTAACTTAGAACttcttaaaatataaatatcacTCAAAAGTTAG
GCTGAGTGGAATACTATCGATTCACTATGTATTGTTCTTTTCCAAGTTAT
TCATGGACACTAATCAGGGTGtataaattaaaacaattttaattAATGAG
AATAgttagaaaaagtaaaacataGTCCCCGGAAAAATATGTACGGCAAG
CTAAAACCGCTAGCGAAAATCAAAACGCTGCAGCGAAAGGCTTCAGACAC
GTACGGTTATTATTATATAGATACAGCATAAATAAATGTGTGTGTTAAAA
AGATATAGTGTCCACATAATTTTGAGACTTTTATTAGGACGTAATGGAAA
TGTTTAAGTAAGGAAATTTTCCTGTACATCACCAGCAACAGTCCCGTCTT
AATTTCACTTCAAAGATCAAAtcaaatattaaattaaaagttttgttttt
aaataagagtgatatcatttgcttactcatcaattttaattaacaagctt
ttcacattggattgacacggatgtggaacaagattggtcagaaagaggaa
aagaaaaatatttttttgcttatatcagcatactataacaatagcaagac
actgtcctggtatTGATATGAAATACGtgtttgatatgaaacggaaacac
ttatgtaaaaataaaacctttaaagtgaTTAGAAAATCATCTTTCTAATG
CTTAGCATCGTCAAACGACATTCATGTTTGACGTATTACATAAATGATGA
ACTACAGAGTTTCGGCAATTAATTAATAATCGTTTCATAAATCCcttttt
tccatgaaattcAAGGAAATTGTCGTTTCGTTGTATGAGAAGTAGCTAGC
AGAGAAAAGCTATCAACATTAATTTAACACACGAAATCTTCTTCTTATAG
CGGCTGGGTTTCCAACAACACTGAAGCAGCAATTATTATTTATTAGTTCA
ATTTGCTGGCTAAAAGGACGCACTTTtttcaagaagaagaaaaagatgtC
TACCAAAGTGAAAGTTTCGTTGTATTACTGTTTTCAGACTTATGGACCTC
CATTTTATCaagcattttttgattttaagttAGGAGATACCATTTCGTGT
ATACGTAGAGCAGTATATTTATACGCTTTGAGGAGCTCCATTAATACATT
TGAGGAGCTGATACTTTTGTTCGATGagatttgcccaaaatttcCACTGG
ATGACACAACTCGATATTCGACATTACTTtcttcaaacaatgaaaagaat
gaaatcaaactttatttttgctTGAGTAGATGCAAGAAAAATCTAGAATT
AGTGGAACGAATGAACTCAAATAACCAACTCAGAGTTTTATGGAGATTGA
TCGTTCTCGCTTTTGGGACTAACAAAATGGTTACTTCATTTTACACTGAT
CAAAATATAGCCGAAATTTATGACCATATCGAGTCCATTACAGGATTACC
TACTAAAAACCTGATGCTGATTTCGAAtgagaaagaaatttttcaatatg
CAAATCAGTCAGTTTTCAAACAAAATGACACTGAAACTGAAAGTATCTTA
ATATATGTTGTCGCCTACttccaagaaaacaaaaaactggAAAATATTTG
TCTTCAATATGGAATCAAACATCTGAAATCGCTCAAATTGAGATTCTTAA
CAAAAGAAGAAGAGTTGAACCCAAGAGAAATGGGATCAATCAAAGACATT
AAAAATTATGTTCATAAAACACATAATATTCCTCTCCATCAACAAAGTAT
ACTTTACCAACATCAAGAGATTGAAAACGATTCGACCAAAATATTCGATC
TTTTCTCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067640-exon-scaffold_472-1491911889:109972..110792 | TCONS_00067640-exon-scaffold_472-1491911889:109972..110792 | Clytia hemisphaerica | exon |
| TCONS_00067640-exon-scaffold_472-1510915933:109972..110792 | TCONS_00067640-exon-scaffold_472-1510915933:109972..110792 | Clytia hemisphaerica | exon |
| TCONS_00067640-exon-scaffold_472-1575043694:109972..110792 | TCONS_00067640-exon-scaffold_472-1575043694:109972..110792 | Clytia hemisphaerica | exon |
| TCONS_00067640-exon-scaffold_472-1491911889:114244..114332 | TCONS_00067640-exon-scaffold_472-1491911889:114244..114332 | Clytia hemisphaerica | exon |
| TCONS_00067640-exon-scaffold_472-1510915933:114244..114332 | TCONS_00067640-exon-scaffold_472-1510915933:114244..114332 | Clytia hemisphaerica | exon |
| TCONS_00067640-exon-scaffold_472-1575043694:114244..114332 | TCONS_00067640-exon-scaffold_472-1575043694:114244..114332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_472 | supercontig | scaffold_472:109972..114332 + |
Blast
The following BLAST results are available for this feature:
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