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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067639 ID=TCONS_00067639|Name=TCONS_00067639|organism=Clytia hemisphaerica|type=transcript|length=1701bp
AAATGCTGTTACATCACTTTCCGTTGTAAGAATTTCGAAGAAAATGTGAA
TCTTTAAAATATATAGGGGCAATACTATTACTGGAGAGAATTACATAGCA
CAATATTAGCGACTGGTTAACCAACTATTCAACAAAACTCTGAACcatca
aagaaattttaatcAAGAAGAAACACAACAATGTCTATCAAAGTGAAAGT
TTCAATATACCACTGTCTACATATTGACCAAGGTCCATTTTTTGAATCGA
ATGATTTTGAGTTGAATGATACTATTGCATATGTAAATCAAAAGATTGCA
TGGAGAGGACTGGTATATGGTTACCCCATGGCCATGGTACTTTTATTTGA
TAACGTTAATTTTACAACACCTCTTCTTGGAGAAACTCGACTTTCAACTC
TTGTTACATCAGAATCTGGAATTGACTCAATTCCAAGGACGAATaaatta
aaactttattttgGTTTACGAAAATGTAAAGAGTCtatgttgattttgaa
aataagaaaaacagttttctcGACAGATCATATCACATCCTTATGGAGAC
TTACTGTTATAGCTTTTGGAAGTGGCCAGATAATTACGACAACATATACT
AATGATCGCAATATCGCTGAAATCTATGACTATTTAGAGTCCATTACAGG
CTTACCGGCTGATAACCTGATATTACTTTTTGATGATaaaacaccttttc
aatatacaAACGAGTCAGTTTTTCATGAACATGTGTTCCTAGATGTTATC
GCTTGTTTCCAAGAAAACGAAAAACTGGAAAATATTTGTCTCAAATATGG
AATCAAACATCTGAAATCACTTAAGTTGAGATTCTTAACAAAAGAAGAAG
AGTTGAACCCAAGAGAAATGGGATCAATCAAAGACATTAAAAATTATGTT
CATAAAACACATGATATTCCTCTCCATCAACAAAGTATACTTTTCCAACA
TCAAGAGATTGAAAACGATTCGACTAAGATATTTGATCTTTTGTTACAAA
ATGGAGTTTTGGATGGAGATTTGTGTTTTCACCTCGTCATTAGGAAAAAG
CCATTTGAAATTACAGTCATGTTTCATCACCAAGGGCGTACAGGTGTTTC
GGACCATTTGGTAGAGATTTGTGATTCAGACACAATAGGAGAGGCTAAAA
TGAGAATACTCCGGCAATATTACCCTTGGAAGATTGAAAACATCCAAAGA
CAACTTGAGGATACAAACTCCGCTGTTTCATCAACTGGTAGAGAATTTCC
TTCTgagttttttcaatttcagaagaaaaacaTCACTTATTTGGACTGTC
AGACTGTAGAAGAATGCAGATTCTTACCAGATCATGAATATCAGATGAAA
GAAAGCCTGTTGATTAGAATTCGTTTAGATTCTACTCAATCAGATGTAGG
TGTTGTGCACTATACGATACCTAAAGATCATCTCTTGctttatcaaactt
taaaagattttaagagaCAGTATGGAGTTTATCGTTGGGAGCTCCATCTC
CTGCCAGATCAAACGGGCGTGACTAAAAATCCTAAACATTGTTGGATGAT
TGAATCAATCGACGTGGACGTGTTTGTTGTAGATTACGCTGTTATAAAGA
GGCGATCATGTTATATAATGTAAAGTTAAAATTTATACTTTCGATCTCTT
CTCGTAAAGGAAGAGtagaaaaatatgatttttttaggaACTTTTTTGGT
G Run BLAST on NCBI transcript from alignment at scaffold_472:109883..111583+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067639 ID=TCONS_00067639|Name=TCONS_00067639|organism=Clytia hemisphaerica|type=transcript|length=1701bp|location=Sequence derived from alignment at scaffold_472:109883..111583+ (Clytia hemisphaerica)
AAATGCTGTTACATCACTTTCCGTTGTAAGAATTTCGAAGAAAATGTGAA
TCTTTAAAATATATAGGGGCAATACTATTACTGGAGAGAATTACATAGCA
CAATATTAGCGACTGGTTAACCAACTATTCAACAAAACTCTGAACcatca
aagaaattttaatcAAGAAGAAACACAACAATGTCTATCAAAGTGAAAGT
TTCAATATACCACTGTCTACATATTGACCAAGGTCCATTTTTTGAATCGA
ATGATTTTGAGTTGAATGATACTATTGCATATGTAAATCAAAAGATTGCA
TGGAGAGGACTGGTATATGGTTACCCCATGGCCATGGTACTTTTATTTGA
TAACGTTAATTTTACAACACCTCTTCTTGGAGAAACTCGACTTTCAACTC
TTGTTACATCAGAATCTGGAATTGACTCAATTCCAAGGACGAATaaatta
aaactttattttgGTTTACGAAAATGTAAAGAGTCtatgttgattttgaa
aataagaaaaacagttttctcGACAGATCATATCACATCCTTATGGAGAC
TTACTGTTATAGCTTTTGGAAGTGGCCAGATAATTACGACAACATATACT
AATGATCGCAATATCGCTGAAATCTATGACTATTTAGAGTCCATTACAGG
CTTACCGGCTGATAACCTGATATTACTTTTTGATGATaaaacaccttttc
aatatacaAACGAGTCAGTTTTTCATGAACATGTGTTCCTAGATGTTATC
GCTTGTTTCCAAGAAAACGAAAAACTGGAAAATATTTGTCTCAAATATGG
AATCAAACATCTGAAATCACTTAAGTTGAGATTCTTAACAAAAGAAGAAG
AGTTGAACCCAAGAGAAATGGGATCAATCAAAGACATTAAAAATTATGTT
CATAAAACACATGATATTCCTCTCCATCAACAAAGTATACTTTTCCAACA
TCAAGAGATTGAAAACGATTCGACTAAGATATTTGATCTTTTGTTACAAA
ATGGAGTTTTGGATGGAGATTTGTGTTTTCACCTCGTCATTAGGAAAAAG
CCATTTGAAATTACAGTCATGTTTCATCACCAAGGGCGTACAGGTGTTTC
GGACCATTTGGTAGAGATTTGTGATTCAGACACAATAGGAGAGGCTAAAA
TGAGAATACTCCGGCAATATTACCCTTGGAAGATTGAAAACATCCAAAGA
CAACTTGAGGATACAAACTCCGCTGTTTCATCAACTGGTAGAGAATTTCC
TTCTgagttttttcaatttcagaagaaaaacaTCACTTATTTGGACTGTC
AGACTGTAGAAGAATGCAGATTCTTACCAGATCATGAATATCAGATGAAA
GAAAGCCTGTTGATTAGAATTCGTTTAGATTCTACTCAATCAGATGTAGG
TGTTGTGCACTATACGATACCTAAAGATCATCTCTTGctttatcaaactt
taaaagattttaagagaCAGTATGGAGTTTATCGTTGGGAGCTCCATCTC
CTGCCAGATCAAACGGGCGTGACTAAAAATCCTAAACATTGTTGGATGAT
TGAATCAATCGACGTGGACGTGTTTGTTGTAGATTACGCTGTTATAAAGA
GGCGATCATGTTATATAATGTAAAGTTAAAATTTATACTTTCGATCTCTT
CTCGTAAAGGAAGAGtagaaaaatatgatttttttaggaACTTTTTTGGT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067639-exon-scaffold_472-1491911889:109883..111583 | TCONS_00067639-exon-scaffold_472-1491911889:109883..111583 | Clytia hemisphaerica | exon |
| TCONS_00067639-exon-scaffold_472-1510915933:109883..111583 | TCONS_00067639-exon-scaffold_472-1510915933:109883..111583 | Clytia hemisphaerica | exon |
| TCONS_00067639-exon-scaffold_472-1575043694:109883..111583 | TCONS_00067639-exon-scaffold_472-1575043694:109883..111583 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_472 | supercontig | scaffold_472:109883..111583 + |
Blast
The following BLAST results are available for this feature:
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