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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067637 ID=TCONS_00067637|Name=TCONS_00067637|organism=Clytia hemisphaerica|type=transcript|length=1792bp
AATGAAAAGCTCCTAAGAATTAACATAGTGACTTAATTTGtacggatttt
tttctcacaaaatagtgCAAGTTAATTGTCTTTTTACAATGAAATAGTCT
AAAATACATACTTCGTCGTTGATATATTGTATTCTCCATGGATGTTGAGC
ATCTCTGACTACTCCTCTTTGGTTTGGCATTACATGAAGCCCCTGACTGC
TTATTCCTTCTTGTAAACAAAACGAGGACAAAAAAGGTTTCGNGTATAAT
ATCTTCTAAATAGTATCATATTCAATGAAAAGCTCCTAAGAATTAACATA
GTGACTTAATTTGtacggatttttttctcacaaaatagtgCAAGTTAATT
GTCTTTTTACAATGAAATAGTCTAAAATACATACTTCGTCGTTGATATAT
TGTATTCTCCATGGATGTTGAGCATCTCTGACTACTCCTCTTTGGTTTGG
CATTACATGAAGCTCCTGACTGCTTATTCTTTCTAGTGAACAAAACGTGg
acaaaaaagttttcaaggcCTCATTACTGTTAgtatcaaaaagaaattta
taaactGGATACTCTATTATTTCGTCCCCTTTTTGAAGAAGGTCCATACG
AATTCGAACCAAGATCGTTTCatcaattttgtaattttttatattCAGTG
AAATTTTACATTCCTCTACTGTTTTTGAGTCTTCGAAAACGTCGTTAAAT
CGTCGAAGAACAAAGCAATCTGTTGGAACCTTTCTACTTGTCGATGAAAG
AATGGAGCTCGGATCATTCAGCTGTTTCTGAATATATGCTAACCTCTCTG
GATAATGTTTCTCTAGTATTTTCATCTTAACCTCGGCTATAGTATCTGAA
CCAGATATTTCAATCAAATACTTTCTAGAGTGATTCCGCCGAAAATCTGT
ATCAACCTCGATCGTGAATGTTTGCTTAACAATCACAACATGGAAATGCA
TATCTTTTTCGAAGCTTGTATTTTGTGAGAAAAGATCGAATATTTTGGTC
GAATCGTTTTCAATCTCTTGATGTTGGAAAAGTATACTTTGTTGACGATA
AAGTATATTATGTGTTTTGTGAACATAATTTTTAATGTCTTGGATAGATT
CTATTTCTCTTGGATTCAACTCTTCTTCTTTCGTTAAGAATCTCAATTTG
AGCGATTTCAGATGATTGATTCCATATTTGAGACAAATATTTtccagttt
ttcattttctttgaagtAGGCAACAACATACACTTGCAttatttcacttt
cattttcagttcgTAAAATTCCTTTTTCTGTTGATAATATCAGGCTTTCA
GCAGGCAATCCTGTAAATGACTCGATATAGTCGTGAATTTCAGCCATATT
GCGATCAGTGTAGCCTGTTGTAATTATTTGACCTGTTCCAAAAGCTTTAA
CTGTTAATCTccataaagttttgattgtGTACGTAGAGTCTACTTGTTTT
CTTTCCTGGACAATCTCCAGTGATTGTCTACATCTTCTCAGCCCAACATA
AAGTTTAATTTCGGTTTGCTCGGATATTGAATCGTCGTAACCAGTCGCCA
GTGTTGAGAGAAGTGTACTTCCAAGAAGAGGAGTTGTAAAATCCTTACCA
TTGAATAAAAGTATCAAATCTGTTGGTATGGACAGAAATGTGCTTGTACA
TGATAGAGTTACACATACAAATGATATTCTATCGCTCAGCCTAAAATCAG
TCGATTCAAAAAACGGAGCTTGATCGGTCTGAAAACAATgataaattgaa
actttcacTATGCTAGACATCGTGTTCACATACTGTCTTTCA Run BLAST on NCBI transcript from alignment at scaffold_472:104766..106557+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067637 ID=TCONS_00067637|Name=TCONS_00067637|organism=Clytia hemisphaerica|type=transcript|length=1792bp|location=Sequence derived from alignment at scaffold_472:104766..106557+ (Clytia hemisphaerica)
AATGAAAAGCTCCTAAGAATTAACATAGTGACTTAATTTGtacggatttt
tttctcacaaaatagtgCAAGTTAATTGTCTTTTTACAATGAAATAGTCT
AAAATACATACTTCGTCGTTGATATATTGTATTCTCCATGGATGTTGAGC
ATCTCTGACTACTCCTCTTTGGTTTGGCATTACATGAAGCCCCTGACTGC
TTATTCCTTCTTGTAAACAAAACGAGGACAAAAAAGGTTTCGNGTATAAT
ATCTTCTAAATAGTATCATATTCAATGAAAAGCTCCTAAGAATTAACATA
GTGACTTAATTTGtacggatttttttctcacaaaatagtgCAAGTTAATT
GTCTTTTTACAATGAAATAGTCTAAAATACATACTTCGTCGTTGATATAT
TGTATTCTCCATGGATGTTGAGCATCTCTGACTACTCCTCTTTGGTTTGG
CATTACATGAAGCTCCTGACTGCTTATTCTTTCTAGTGAACAAAACGTGg
acaaaaaagttttcaaggcCTCATTACTGTTAgtatcaaaaagaaattta
taaactGGATACTCTATTATTTCGTCCCCTTTTTGAAGAAGGTCCATACG
AATTCGAACCAAGATCGTTTCatcaattttgtaattttttatattCAGTG
AAATTTTACATTCCTCTACTGTTTTTGAGTCTTCGAAAACGTCGTTAAAT
CGTCGAAGAACAAAGCAATCTGTTGGAACCTTTCTACTTGTCGATGAAAG
AATGGAGCTCGGATCATTCAGCTGTTTCTGAATATATGCTAACCTCTCTG
GATAATGTTTCTCTAGTATTTTCATCTTAACCTCGGCTATAGTATCTGAA
CCAGATATTTCAATCAAATACTTTCTAGAGTGATTCCGCCGAAAATCTGT
ATCAACCTCGATCGTGAATGTTTGCTTAACAATCACAACATGGAAATGCA
TATCTTTTTCGAAGCTTGTATTTTGTGAGAAAAGATCGAATATTTTGGTC
GAATCGTTTTCAATCTCTTGATGTTGGAAAAGTATACTTTGTTGACGATA
AAGTATATTATGTGTTTTGTGAACATAATTTTTAATGTCTTGGATAGATT
CTATTTCTCTTGGATTCAACTCTTCTTCTTTCGTTAAGAATCTCAATTTG
AGCGATTTCAGATGATTGATTCCATATTTGAGACAAATATTTtccagttt
ttcattttctttgaagtAGGCAACAACATACACTTGCAttatttcacttt
cattttcagttcgTAAAATTCCTTTTTCTGTTGATAATATCAGGCTTTCA
GCAGGCAATCCTGTAAATGACTCGATATAGTCGTGAATTTCAGCCATATT
GCGATCAGTGTAGCCTGTTGTAATTATTTGACCTGTTCCAAAAGCTTTAA
CTGTTAATCTccataaagttttgattgtGTACGTAGAGTCTACTTGTTTT
CTTTCCTGGACAATCTCCAGTGATTGTCTACATCTTCTCAGCCCAACATA
AAGTTTAATTTCGGTTTGCTCGGATATTGAATCGTCGTAACCAGTCGCCA
GTGTTGAGAGAAGTGTACTTCCAAGAAGAGGAGTTGTAAAATCCTTACCA
TTGAATAAAAGTATCAAATCTGTTGGTATGGACAGAAATGTGCTTGTACA
TGATAGAGTTACACATACAAATGATATTCTATCGCTCAGCCTAAAATCAG
TCGATTCAAAAAACGGAGCTTGATCGGTCTGAAAACAATgataaattgaa
actttcacTATGCTAGACATCGTGTTCACATACTGTCTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067637-exon-scaffold_472-1491911889:104766..106557 | TCONS_00067637-exon-scaffold_472-1491911889:104766..106557 | Clytia hemisphaerica | exon |
| TCONS_00067637-exon-scaffold_472-1510915933:104766..106557 | TCONS_00067637-exon-scaffold_472-1510915933:104766..106557 | Clytia hemisphaerica | exon |
| TCONS_00067637-exon-scaffold_472-1575043694:104766..106557 | TCONS_00067637-exon-scaffold_472-1575043694:104766..106557 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_472 | supercontig | scaffold_472:104766..106557 + |
Blast
The following BLAST results are available for this feature:
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