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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067605 ID=TCONS_00067605|Name=TCONS_00067605|organism=Clytia hemisphaerica|type=transcript|length=1204bp
gaaagtatAAGAAGCCACCATCAAAACGAATACAATTCTGTTCTTGCAAC
CCTTACCAATGCCAAGAAAGATTTACAAGCTTCACAACAAGAAGCAACAG
CACTGGAAACTTCTTTAAAAGCAAAACAACAAGAAATCAAAACACATcaa
gagaaaatttcaaattatcttTCGAAAATGCAAACATTACAAGAAGAGAA
GAAATTAACACAAATTGAAGATGTTAATTTCTTCTCTGTATACCAATCTA
TCAAGAATCTTCAAGTTACAATCAAAGAAACTTGTACGGATAAATACAGC
GAATACGAGAGCGttcaaaaagctttcaaaatggTTTATGAACGACTGGC
TGAATATGGAAATAGTTTGACTGATGAACAATTAAATTTACTTGGAGATC
AACAGAAAGCACTTGAACTTGAACTGAAAAACTATACACCAGCAATtaca
tttgatttttaatttttttNggagggcttcgccctcctatatagcccatg
tcgtatatatacgacatcggcacttaaagggttaaataaCAAGCACACTA
tccaaaatattctttttaattattaCTTTTTGGCAACAGTTTGCGTCCTC
TATAATGGCACGTCACaataaacttttaaattatTTCGCACGATTTGTTT
GAACTTTCCTAAAGATTCGTCTCGTTATAGACATTGCAACTCACCCCACC
AAGATGATGTAATCGTCGGCTCAAAGTACTATATGTTAGAAGAATATTCA
CAGTATTGAGACAGTAAAATTGTGACTATgacaatgaaataaaaactcAC
AAGTACAACTTTTTAACTCCCTGTCTAATTATCAGCATAGTCCGTATAGA
AAACGGACTATGTTATCAGGGGATAAAAAATATGCTGCGAGATGTAAAAT
AACTAAATAATTTGAGTACCTGTGAGGATCTAGTAGTGAGGGAAAGTTGC
AAATCAAACCAGCATACCAGTCATGATGGTTCCAAAGGAAAACAGCCTCC
TCCTTCCACAGTTACTGAAACATACTGAAAGAAATCATAATAAATGTTTT
CATTTAGGTTCTTTGTTTACCGGGAGGGAAGGGAGATTTTAAGGTACCCC
AGATTGCTAAGTAAAtgaaaacaagtaatactttaatggacctacctatt
tataaaacgaataattagaatttaatggaagtaatgtataattttaaatt
tcga Run BLAST on NCBI protein sequence of TCONS_00067605-protein >TCONS_00067605-protein ID=TCONS_00067605-protein|Name=TCONS_00067605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
ESIRSHHQNEYNSVLATLTNAKKDLQASQQEATALETSLKAKQQEIKTHQ
EKISNYLSKMQTLQEEKKLTQIEDVNFFSVYQSIKNLQVTIKETCTDKYS
EYESVQKAFKMVYERLAEYGNSLTDEQLNLLGDQQKALELELKNYTPAIT
FDF Run BLAST on NCBI transcript from alignment at scaffold_471:510771..513062- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067605 ID=TCONS_00067605|Name=TCONS_00067605|organism=Clytia hemisphaerica|type=transcript|length=2292bp|location=Sequence derived from alignment at scaffold_471:510771..513062- (Clytia hemisphaerica)
GAAAGTATAAGAAGCCACCATCAAAACGAATACAATTCTGTTCTTGCAAC
CCTTACCAATGCCAAGAAAGATTTACAAGCTTCACAACAAGAAGCAACAG
CACTGGAAACTTCTTTAAAAGCAAAACAACAAGAAATCAAAACACATCAA
GAGAAAATTTCAAATTATCTTTCGAAAATGCAAACATTACAAGAAGAGAA
GAAATTAACACAAATTGAAGATGTTAATTTCTTCTCTGTATACCAATCTA
TCAAGGTATGTGTAATAGTTATCGCACAGTACAGAGTACAATATGGGATA
TATTTTTCGAGTTCAGATTTTTCGTCACATCATAGTCCGTATAAAAAACT
CCGGTCTAGAAGCCTTTCCTTTCTTTCCATTGTTTCTTACTTGAACTTGC
GTTGAGAACTTAGTTTGTTTTGCTCACTTATTGATCATGTGATTAAATCC
TAAACCAATCCCAAGAGGAATACTTGGTAACGTGATAAAACTGAGCGGAT
CAATTTTCATCTTTTGATAATAACAAAGGAAAAAGCTAACAAAAAGTTAA
AACAATAAGCTTCCAGTCCAGGGTTTTTATAAGGACTATGGTCATATTTA
GAAAAAATATCTCCATTTGTATCTTTTCTTTGTTTTCTTTTTCACTTCAT
GTATTTTGGTGAAATTAACATCAAAATTCCACTCTTCAAAAATGATTCGA
ATGGTCATAAGTACAAAATTATGATCGCTCGCTTACCAGACCCCTATTTT
GAGCGCGATCTTGTATTTGTACGGTACAATATGAAATACAGCATTTATGT
AAGCGTTTTTAGCCAATCAGATTGCTCATATTTTTCATGTTGTTAATAAG
TGTAATAATTATCGCACGATACATTTTAGTTCAAGATTTTTTATCATATT
TGGCAAACCTTTAGGTGAGGAAAATATAGAAAACTCTGAACGATAAAATC
ATATTCAATAATTTACGAGTTAAAGTGAACTGGTTTATTGTCAACTTGGA
AAATATCGACAAACATTTCTCTCTCAATGTGTCTCTTTTTCATTATGTTG
TTTTTCTCTTCCTATATTTTGGTTGAATCTACATCAAAACATTCGTAATG
ATTCGAATGGTCATTAAAAATATCAAAAATATTATTAAGCATAATTAGAA
GAAAAAAAAAAGATTCTAAGAACTAAAATTGTACAAAATATGATACCTCG
CTTTTTGTAGAACTCGGTCACGTAATCTTACGTGTAAAATATGAAATACA
AAATTTATGTACCCATTTTTCATGTCTGGGTGGCTCCAAGTCTAAAGTTT
CGAACATTTCTTTAAAATACTTTTTCTTGGAAACTTTCTTTAGAATCTTC
AAGTTACAATCAAAGAAACTTGTACGGATAAATACAGCGAATACGAGAGC
GTTCAAAAAGCTTTCAAAATGGTTTATGAACGACTGGCTGAATATGGAAA
TAGTTTGACTGATGAACAATTAAATTTACTTGGAGATCAACAGAAAGCAC
TTGAACTTGAACTGAAAAACTATACACCAGCAATTACATTTGATTTTTAA
TTTTTTTNGGAGGGCTTCGCCCTCCTATATAGCCCATGTCGTATATATAC
GACATCGGCACTTAAAGGGTTAAATAACAAGCACACTATCCAAAATATTC
TTTTTAATTATTACTTTTTGGCAACAGTTTGCGTCCTCTATAATGGCACG
TCACAATAAACTTTTAAATTATTTCGCACGATTTGTTTGAACTTTCCTAA
AGATTCGTCTCGTTATAGACATTGCAACTCACCCCACCAAGATGATGTAA
TCGTCGGCTCAAAGTACTATATGTTAGAAGAATATTCACAGTATTGAGAC
AGTAAAATTGTGACTATGACAATGAAATAAAAACTCACAAGTACAACTTT
TTAACTCCCTGTCTAATTATCAGCATAGTCCGTATAGAAAACGGACTATG
TTATCAGGGGATAAAAAATATGCTGCGAGATGTAAAATAACTAAATAATT
TGAGTACCTGTGAGGATCTAGTAGTGAGGGAAAGTTGCAAATCAAACCAG
CATACCAGTCATGATGGTTCCAAAGGAAAACAGCCTCCTCCTTCCACAGT
TACTGAAACATACTGAAAGAAATCATAATAAATGTTTTCATTTAGGTTCT
TTGTTTACCGGGAGGGAAGGGAGATTTTAAGGTACCCCAGATTGCTAAGT
AAATGAAAACAAGTAATACTTTAATGGACCTACCTATTTATAAAACGAAT
AATTAGAATTTAATGGAAGTAATGTATAATTTTAAATTTCGA Coding sequence (CDS) from alignment at scaffold_471:510771..513062- >TCONS_00067605 ID=TCONS_00067605|Name=TCONS_00067605|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_471:510771..513062- (Clytia hemisphaerica)
AATCTTCAAGTTACAATCAAAGAAACTTGTACGGATAAATACAGCGAATA
CGAGAGCGTTCAAAAAGCTTTCAAAATGGTTTATGAACGACTGGCTGAAT
ATGGAAATAGTTTGACTGATGAACAATTAAATTTACTTGGAGATCAACAG
AAAGCACTTGAACTTGAACTGAAAAACTATACACCAGCAATTACATTTGA
TTTTTAAGAAAGTATAAGAAGCCACCATCAAAACGAATACAATTCTGTTC
TTGCAACCCTTACCAATGCCAAGAAAGATTTACAAGCTTCACAACAAGAA
GCAACAGCACTGGAAACTTCTTTAAAAGCAAAACAACAAGAAATCAAAAC
ACATCAAGAGAAAATTTCAAATTATCTTTCGAAAATGCAAACATTACAAG
AAGAGAAGAAATTAACACAAATTGAAGATGTTAATTTCTTCTCTGTATAC
CAATCTATCAAGAATCTTCAAGTTACAATCAAAGAAACTTGTACGGATAA
ATACAGCGAATACGAGAGCGTTCAAAAAGCTTTCAAAATGGTTTATGAAC
GACTGGCTGAATATGGAAATAGTTTGACTGATGAACAATTAAATTTACTT
GGAGATCAACAGAAAGCACTTGAACTTGAACTGAAAAACTATACACCAGC
AATTACATTTGATTTTTAAGAAAGTATAAGAAGCCACCATCAAAACGAAT
ACAATTCTGTTCTTGCAACCCTTACCAATGCCAAGAAAGATTTACAAGCT
TCACAACAAGAAGCAACAGCACTGGAAACTTCTTTAAAAGCAAAACAACA
AGAAATCAAAACACATCAAGAGAAAATTTCAAATTATCTTTCGAAAATGC
AAACATTACAAGAAGAGAAGAAATTAACACAAATTGAAGATGTTAATTTC
TTCTCTGTATACCAATCTATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067605-exon-scaffold_471-1575043694:512808..513062 | TCONS_00067605-exon-scaffold_471-1575043694:512808..513062 | Clytia hemisphaerica | exon |
| TCONS_00067605-exon-scaffold_471-1575043694:510771..511719 | TCONS_00067605-exon-scaffold_471-1575043694:510771..511719 | Clytia hemisphaerica | exon |
| TCONS_00067605-exon-scaffold_471-1510915933:512808..513062 | TCONS_00067605-exon-scaffold_471-1510915933:512808..513062 | Clytia hemisphaerica | exon |
| TCONS_00067605-exon-scaffold_471-1510915933:510771..511719 | TCONS_00067605-exon-scaffold_471-1510915933:510771..511719 | Clytia hemisphaerica | exon |
| TCONS_00067605-exon-scaffold_471-1491911889:512808..513062 | TCONS_00067605-exon-scaffold_471-1491911889:512808..513062 | Clytia hemisphaerica | exon |
| TCONS_00067605-exon-scaffold_471-1491911889:510771..511719 | TCONS_00067605-exon-scaffold_471-1491911889:510771..511719 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_471 | supercontig | scaffold_471:510771..513062 - |
Blast
The following BLAST results are available for this feature:
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