TCONS_00067594 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067594
Unique Name	TCONS_00067594
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	5416

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_471:85205..95013-

transcript sequence

>TCONS_00067594 ID=TCONS_00067594|Name=TCONS_00067594|organism=Clytia hemisphaerica|type=transcript|length=5416bp
CGTTTGGCTTGCACATATATATTTTCTGTCGTGTTAGATAGAATAACAAG
ACAAGGTCTAAACACTCTCTATGTTTGAGCTTATAaactaaaacgtgtgt
gttatGTATTTAAACATACAAATCAAAACACACACATGAAAGAGGATATC
AAATAGTTTTAAAGTTGTGACCAGTGGTAAAGACATAACATTCTTTTCTC
TTATACTATAAAGTAAATGAACTTTGgagtaaaaatatcaatttatcCTG
GAAGCGAAGGAGGTAGTGGAAGGAAGCAAAATGGCGTTTGTGGAAAGTAT
TGTTAACGCTCCGATGGAAGCATgtaaaagTATGCTCAAATCAATATCAA
CCAAACTTGGATACTCATCTGACAAACAGTACATCAATGATACATCTTTG
GAGAAAGTGTTGAAGGAAAAGACAGAGTTTCGAGTCACCAAAGTTACCGT
CAAGAAATGGGAAGTCATCGACCAAATCAAGATCCACTTTGATGATGATA
CGGAATGGTCTTATGGTCCGGATTGCGGTGATGAAGATCCCCGGGCACTC
ATTATGACGGAAGGGGAATACTTGACCCGGGCAACTCATGAGAAATTGTA
TGACCACGAGTCAGCTGGAGCATCTGTCGAATTTGAAACCAATAAAGGAC
GTGTTTTTAAATTCGCACCTTCAGAAATTGATAGTATCTCGCTGGGTCAT
GATTCGAATAAAAAGACTGTCATTGCAGACGAAGGTTATGAGATCGTTTG
TTTAAAGATCCACCGAGGCGAATTGATTGGTTCAGAACAACAACCGGTGC
CAAAAGATGATTTGAATAAAACACATCCAAAATCCTGGTACGTGTTGGCT
TATTATGCAGAGAAAGAGGATGCCGACCTTGACAATGAACTTCTACTGGA
AGGTGTGGCTCCTACCCGACCTTTCCAACGAACCAGAAATAAaccaaatg
aaaaagaagacaaaaaGGATGAAAGTAATGATAAAGTTGACGACAATGAC
GAGAACAAACGTCAATTTAGTGAATCGGGAGCGACTCTTGGACGACGAAA
AAGTTTACGTAAGCGGCTGACCAGCGAAGCACTGAACATCAATGATGCAG
TTGCCGTTCTTCAGCGAGCTTCATCTCGGGATGACACTCTAGACGAACAA
ATACCACTATCACCACTTTATCAACGAAGTACATCGTCGTTTCATCGTAG
TACTTCCAGGGAAGCTAAAACTCCAACCGAGGAACGTAAACGTCCCAACC
TTTGTCGTGGTGTATCACTTATCGAGGATAAAGAATTTTTCCCATCAGAT
GCATTTACTTCTATACCAGAAAAACAAGAAGAGCCTGCATTAGAAACCAC
TAAGAAAGAGGCTGACAACGAAAATAAAAGTAGACCCGATGAAGAGCCGA
CAAAAGACGTTGTCGAAACAACAACCGACGACAATGCGACTGACGTGAGT
GACGACGAATCAGACTCTGACTCCGACCAAGAAATCCTTGACCTAGATCT
CGACTATTACCATTTTCATGACCAAAGACAGACTCAAAACGCTTGGAAGA
AGATCAAAGATATTTGCAGTAAAAAGCGAGGTCGGGGTGCCATCCTCGTT
GATTGTCTACGATCAAGCGTCACTAAAAAGACGGGTAACAATAAAAGTAT
CGACCATTGTCGGGATATGGCAACACAACGAGGTTATTGTTCGTCAGAAG
ATGAAGATAATTACGAGTTATTCGAAGTCTTTTACACTCTTTACGAAAGC
ATGGCTCAGAAAGCTGAATTCCTCATGTTTATTTCTACCATCTTCTTCAT
GTCGTTGAATTTAGCTGTTGGTGCTCATAAATCACTATTGGAAGGACAGA
TATTAACAGCAATCGCTACCGACCCAAAATCCATCAACTGGCGTAAGATG
AACACGTTGGAAGAGATGTTTTGTGGGGTCTTCTTCACATGTGATGGATC
ATATCTCAGTTTGTGTCGATCACTAATGCTATACTATTTCACCGTTCGTA
TGTCTCTCAGTTTCTtcaatatcatgaatagcttcTTGATGAAGTATTTA
TCAGATACCAAAACAGCACAAATGGGACGTGATCTTTTTGTCCATGCTTT
ATTCCTGGACAAACGGTTCTTTGAtgaaactaagaacatccacaGCTATA
TGAATGTCCAATCGTTGCACGATCTTCTCTTCGATACTATACCTAACATC
ATTACTTCGGTGGCACGTTACTTCGTAGTGTGCTACTATCTCATCAGTAT
GGATTTGAATCTTGGTTTGGCGTCTGTCTTCTTTACGACCTTCTTCAATT
ACTTCATCGTGAGCTACTTCATCAAACGAGACATTGAAAGGTGGAAGAAA
CAGGTACAAATCGATCGTGTACATGGTCAAATTTCGTACGACGTTTTTGA
GATGATCAGTACAGTGAAAACATTCGCCAAAGAACGATACCATCAACGCG
AGTATGACGAGTGGTTCGAATCACTTATTCAAAGCATGAAAAAAGGAATG
AGTTGGGAATACTTCAGAAGCTTTTTGGAAGACTTCATTGATGCTTGTGA
ATACATCGGAATGATTTACTACGGCTACATTCGCTACACGGGTGACAGTG
GCATGACGTCATCTGATTTCATTGGATTTATTATTCTATATCAACAACTT
CATGGGTTGTTTTGTGAAGTAAGAGATAACTTGATGTGGGTGGGACGTGG
TTTCCATGATGTTAAGAGATGCACAACTCTCAGAGAAACGCAACCAAAGA
TGATTAACGGCACCAATAAACCAGAAAACATCAAAGGAGAAATTGTTTTC
AAGGATGTCAAATTCAAATATCCGTCTCGACCCAAAGACCAAGTTTTGAA
GGGCTTGAATCTGACAATTAAATCCAATTGTATGACTGCAATCGTTGGAA
AATCAGGAGCCGGGAAAAGCACCATTGCAAAACTGGTAACTCGTCTTTAT
GACCCCTCATCTGGTTCCATCACCGTAGATGGCGAGGATCTGAAGTCCTT
CGATGTCGAGTATTTCAGATCCAATCTGGCAGTCGTCGATCAGAGCCCTG
AGCTATTTAACAGACCACTTGCTGAGAATATCGCGTATGGAATGGTCGAT
TCTGATCAATGTACCTATGCTGAATTGGAAGCTGCTGGGAAATTAGCCAA
TTGTGATTTCATATCAAAATTTCGTGAAGGATATTATACGTTTGCTGGGT
ATGGAGGGAATGATTTGTCAGGTGGACAGTTACAGAGAATTGCAATCGCC
CGCGCGGCCATAAGGAATCCAAAGATTTTGATATTGGACGAAGCTACATC
ATCGCTAGATTCTGAGAACGAGAAAGAGGTTCAAGAGGCGTTGGAGAAAT
TGATGAAAGGACGAACCGTCATTGTGATTGCGCACCGGTTGAGTACCATT
CGAAATGCTGATAATATCGTGTGCATGAAAGACGGGACTGTTGTGGAGCA
AGGTACCCATGACGACCTGATGGAGAAAAAAGGTGCATATCATAAGTTGA
TCTCTCAACAAATTTTGGAAGACAAGAAAAAGAAAGGTGACGAAGGCGGA
GAGCAGAAAAGTGTTGATGGTGAAGAGCAGAAAAGTGATGTCGAAGGTGT
TGATGTTAAAAATGGTgagaaaattgttgaaaagaGTGTCGGAAACAAGG
TTGACAAcgaagaaaatgttaaaaatgttGATGGGGAAGCTAACAATGTT
GATGGAATAGATGATAGCGAAGAAAAGGAGAAGGCCATTGAAAGTGCCGT
AGAAAGTGCCGTTGAAAGTGCTGCAAACAGTGTTGACGAAAAGGAGATTG
CTGATAAGGATACCATGGAAGTTGAAAACCTTGGTGAGATTGTTGAAACA
AAACAACCTGTGACAACTTGGGGTCCGTACAGCGTGAATGAAAACAGTGA
AAATAACGAAGAAAAAGCTCCAGGCGGTACTACCATTAAGGGAGAAAACG
ATAGTTCAGTTGAAACTACAAGTGGAAACAAAGAAGAGACCGCTGAAAAG
ACTGGTGACAACAGCCTGCTTTGAAGCCTGTATAGTTATTTGCTATTACT
TATTTTaatttataaacattttttgtaaTAACCTTTGTAgacaattttga
taatatttaatTATAGGAATTTTAGGACACACTTTTAAAacgttatttgg
ttcaattcaGTAAATCAACGATCTTTCTTTGAAATTGAGTTTAAGATGCC
ATGGTATTTGTGTTAgattcaatcaaaagaaattttcaatatGTACAATA
TTTTAGGATATAATTATTTACAAAATACTTTGGAAAAATACCTCAAATAG
TTTGTTGTTATTGAGTAGAAATAAGAAAAGTCCATTCGCTTTGAATGTGC
ACTACTGTTTGCTACCATGTGGAAACCATGTCAGGGAGTAattcccttga
gagtggtttctaTATGGTACCAAAAGCAAATACACACTTAAAgcgacata
aaagtagtaaaatgtaaacattgcgcgaaccacgtgtcattaaagagaac
aattaaaatcacgtgtccaaaacaaacttgtcaaacaattgaacaatcaa
aattagccatatttggtttaattttttttattttgacatgtgacatttgt
tttgattttgtagccgctgcatacagtttgtttactcAAGGTTTAGTTAA
TCCCCGCATTCCACGAGGACGGAAGAAACTTTCACGACATTTAGGCGACA
ACAAAGGTTTGAAGAAACATATAATGTGATTTTCAGTCTGGCTTACACAA
TCATTATTTTGATCCACGCAAAGCCTAAGATTCAAATAACAAAACGGCTC
AAAAAATTcgtaaataaaaaagaatacaaaaatacaattatgatttaaaa
aacgaaaaaacaaacagaatgtACAGTGACATACAAAAAACGATAGGAGA
TTTCgtacattcaccaaaataattacatttttgtcatttttcaatcgAAC
ACTACTTTATTTACAGTACATGTAAAAATCTCTGATGAGATTGAAACACA
ATAGCCAAATGAGCATTAGTATACCATAAGTTGGTATGAGATGTTGAAAT
TTCTTACTGTTTTTAACAAATTCATCAAACCAAACCACCAGTTCTGCAAC
AAACACGATTTAAACATCCTTGATTTTGACATCCATTGGCAGAATAATCA
TAATCTGTTGCAATGTTATCACAGTATGAAAGTTCATTAAGATCAAGGTT
CGGACAACTAGTGACCAGGTTCTCAATACCTGCACTGGTGACATTGATGC
AACCTGATAGGTCCAAATGACGTAATTTTTGCAGACAACCATGTTTAGTT
AACGccctgaaaatttaaaaatatattgagTTTCATAGAAAGGACAGCCT
GATCCCCTTTTTTGTATCTCCCCTTTCGAGGAAAATTTCCAGACTCCCAC
TTCTCGGAACTTTTAT

Run BLAST on NCBI

transcript from alignment at scaffold_471:85205..95013-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067594 ID=TCONS_00067594|Name=TCONS_00067594|organism=Clytia hemisphaerica|type=transcript|length=9809bp|location=Sequence derived from alignment at scaffold_471:85205..95013- (Clytia hemisphaerica)
CGTTTGGCTTGCACATATATATTTTCTGTCGTGTTAGATAGAATAACAAG
ACAAGGTCTAAACACTCTCTATGTTTGAGCTTATAAACTAAAACGTGTGT
GTTATGTATTTAAACATACAAATCAAAACACACACATGAAAGAGGATATC
AAATAGTTTTAAAGTTGTGACCAGTGGTAAAGACATAACATTCTTTTCTC
TTATACTATAAAGTAAATGAACTTTGGAGTAAAAATATCAATTTATCCTG
GAAGCGAAGGAGGTAGTGGAAGGAAGCAAAATGGCGTTTGTGGAAAGTAT
TGTTAACGCTCCGATGGAAGCATGTAAAAGGTATTTTATTTTTTTATTTC
CCTTTGCCAACTTTCTAGCAGAACAAATGATTAATTCAAAACACCAGGGG
GGAGGGAGGTGACACCCGGGAGACAAGTAACGTTTAAGGAGCCCTTCTAT
TGACTGAAACTTGACGATATATTGATTAGTCTGAATCACAGACCTCTATA
GATATACTTCCTATATAGAAATCTATAAGAAACTTTTTTCGCTAGACGAT
GAGCAGAAGCCTATATATTGATGGATAACTAAAACAAAAGTGTTCGCAAA
GCAACTTGTTTAGAATTTTGCTAACATATGAAGTAGGTAAAGGTAGTGTG
CTTCGTCTTCTAAATCTAAAAATGTTTAAAGGGTGAAATGTACCTGAAGG
TAGAACAGTTCCTTTTTTTCGAAACGTCATTGGGCTTCTCCAGAAAAAAA
CCGTACTGTTGAGGAGCTCCAACCTTTTGTGAATTACCCCCTTGGAATTC
CAGGCAATTTTAGGATCATACCCCTCTGGAATTCTGAATTTTTACAGATT
TTCATTCATTACCCCCATGGAATTCCACTTATTTTTGACGGATTTTTGTC
TACTGCTACTGTATGGAATTCCACTGCATTTCAAACCATACCCCCTTGGA
ATATAAATGGACTCTTCAACAGGGGGTGAACGGTTTTTTTCGAAACGTCA
TTATCGTGTAAGGGTAATATGTTTATTTTCAAATGCACTATCTACAAATC
GGGCGCCGAAATATATTGGCAATATTTTAACGTTTTTCAGAATTGAAAGC
TCGGGCGAGAATTGCAGTTTCATTACTTCCGCTTGGTTTCATTGGATTGT
TCGATTTGGGAGGGTTTAAGTGGCTTCCAGGCTATATTCTCAACCTTATT
GGAATATTTTTGAGCTTTTAGATCCTGAGATNGGCTATATTCTCAACCTT
ATTGGAATATTTTTGAACTTTTAGATCCTGAGATCCTAAGGTCCTAAGCG
TTAAGTCTAAAGTTATAACTCAAAGTTAAAACTCTACTTTCAAACCGTAC
TTCAAAGCACTTGAAAATCACTTGCGTTGCATGAACACATAAATGTTAAA
ATTTACGTGATTTGATCGGGGTTTCGAGTGAATTTGAGAAATCTGTGAGA
TTAAGAGATTTGTGGAAATAGTTTTGTTGTTGTCTAGACAATCTACTTTG
TCCGGGCATCTATTACACAATCCAGCCTGATTACGACAATCTCACGTGTA
TAAGCTACCTATCGATAATCTAAGTCTCTGTCTATAATGTGTTATTTAGT
TCCTATGCCGACCTTTCACCCTGTGAATATGAATCTTTTCCAACGAACAT
TCAAAAGTAACGATGAAAATCATTTTAGGGGGGGGGGTTGTACTTTTACA
GTGTGACGGGATTGGCACTTTTTAGTACGGTATTATGGGATTTGACGAAA
GAAAGAGACGGGAAAACAGTATTTTGAAATCAAACAGTGACGGTATTTAG
CCTATTTTTGCTTTTATGTTGGTATTTTAACCTCTACAAACCAGTGTGAC
GGTGTTGTCATTTTTTCAATTTTCGGGATTCTGGGATTCAGCAAAATTTT
TGACAGGAAAAGGTATTTCAAACCCTCCCCATTTTAGCAAACGAAACACA
CATGACTAAACTAAAGCTATCAGAAAGTATCATGATATATTCTAAGACTT
AACAATCTCAAGTTGAGATATAATACCAAAAATTAAACCCGGTAACAAAG
GGAAAAGACTCGATTATTATTACACGAATATTACTAGTCATTTTTTTAAC
ACGAATTGAAAAATTTCGTTAATAAAAACCCCCTTAATTAAAACCAGCCA
TGGTGTCCTTGAAAAAGCAATAAAGTTCGTGTTAATTTTTGTCCGTTGAA
TACTTGCCTAGTAATATTCGTGTAATAAAGTAATTACTGATCGATCAGGA
GAAATCACAAATAGCACTACTCCCCTCTACGAAATACATCTCTAGTGTCG
AAAATCTAAACATTCCATTTCAGTATGCTCAAATCAATATCAACCAAACT
TGGATACTCATCTGACAAACAGTACATCAATGATACATCTTTGGAGAAAG
TGTTGAAGGAAAAGACAGAGTTTCGAGTCACCAAAGTTACCGTCAAGAAA
TGGGAAGTCATCGACCAAATCAAGATCCACTTTGATGATGATACGGAATG
GTCTTATGGTCCGGATTGCGGTGATGAAGATCCCCGGGCACTCATTATGA
CGGAAGGGGAATACTTGACCCGGGCAACTCATGAGAAATTGTATGACCAC
GAGTCAGCTGGAGCATCTGTCGAATTTGAAACCAATAAAGGACGTGTTTT
TAAATTCGCACCTTCAGAAATTGATAGTATCTCGCTGGGTCATGATTCGA
ATAAAAAGACTGTCATTGCAGACGAAGGTATGAAAAATTAGATCATCTGC
AATTCAGATACCATCAGGGATAACGGTTTGTTTGTTATCACTGGATGAAA
ACATCCGACCTGATGTTGATTTAGAGGCAAAAACTGACGCCATATTAAAT
TTCTCGGAGCTCCAATCTGAGCACAATCACAGTCGCAGGAGCTACAGTCA
AAGTGAGTAAATGAGCAGGCGTCCATCTGACCTTGTTGATTGCAGAGAAA
AAAATACAGTTTCACACGTCTCATTGAAATCATACGACGTTTTCAGAAAA
GTAAAACATCGTATTTCCACTTCAGGTTATGAGATCGTTTGTTTAAAGAT
CCACCGAGGCGAATTGATTGGTTCAGAACAACAACCGGTGCCAAAAGATG
ATTTGAATAAAACACATCCAAAATCCTGGTGAGATTTCAATTCATATGCT
TCAGCTAATCTAATAATAGAACATCATTTTTTATCTATTTGATTATGATA
ACGGTCAAACCTTTGTATCTGAGAGAGTTGGCAACTTTTCGATAAAAAAA
AAAAGAATGCGTGAGCTGAAAAAGATTATGCAATTAATTGTAGCGTTTTC
CTACTTCTAACATATGAATTACACTCCTTTTTGGGTTTAGAAGACATTAT
CTTTCTGGAAGTAAGAGTTATTGGGACTTTTCAAGTGTCCAATATTTACA
TAACCCTTTTTATTTAAGGTACGTGTTGGCTTATTATGCAGAGAAAGAGG
ATGCCGACCTTGACAATGAACTTCTACTGGAAGGTGTGGCTCCTACCCGA
CCTTTCCAACGAACCAGAAATAAACCAAATGAAAAAGAAGACAAAAAGGA
TGAAAGTAATGATAAAGTTGACGACAATGACGAGAACAAACGTCAATTTA
GTGAATCGGGAGCGACTCTTGGACGACGAAAAAGTTTACGTAAGCGGCTG
ACCAGCGAAGCACTGAACATCAATGATGCAGTTGCCGTTCTTCAGCGAGC
TTCATCTCGGGATGACACTCTAGACGAACAAATACCACTATCACCACTTT
ATCAACGAAGTACATCGTCGTTTCATCGTAGTATTTCCAGANACTATCAC
CACTTTATCAACGAAGTACATCGTCGTTTCATCGTAGTACTTCCAGGGAA
GCTAAAACTCCAACCGAGGAACGTAAACGTCCCAACCTTTGTCGTGGTGT
ATCACTTATCGAGGATAAAGAATTTTTCCCATCAGATGCATTTACTTCTA
TACCAGAAAAACAAGAAGAGCCTGCATTAGAAACCACTAAGAAAGAGGCT
GACAACGAAAATAAAAGTAGACCCGATGAAGAGCCGACAAAAGACGTTGT
CGAAACAACAACCGACGACAATGCGACTGACGTGAGTGACGACGAATCAG
ACTCTGACTCCGACCAAGAAATCCTTGACCTAGATCTCGACTATTACCAT
TTTCATGACCAAAGACAGACTCAAAACGCTTGGAAGAAGATCAAAGATAT
TTGCAGTAAAAAGCGAGGTCGGGGTGCCATCCTCGTTGATTGTCTACGAT
CAAGCGTCACTAAAAAGACGGGTAACAATAAAAGTATCGACCATTGTCGG
GATATGGCAACACAACGAGGTTATTGTTCGTCAGAAGATGAAGATAATTA
CGAGTTATTCGAAGTCTTTTACACTCTTTACGAAAGCATGGCTCAGAAAG
CTGAATTCCTCATGTTTATTTCTACCATCTTCTTCATGTCGTTGAATTTA
GCTGTTGGTGCTCATAAATCACTATTGGAAGGACAGATATTAACAGCAAT
CGCTACCGACCCAAAATCCATCAACTGGCGTAAGATGAACACGTTGGAAG
AGATGTTTTGTGGGGTCTTCTTCACATGTGATGGATCATATCTCAGTTTG
TGTCGATCACTAATGCTATACTATTTCACCGTTCGTATGTCTCTCAGTTT
CTTCAATATCATGAATAGCTTCTTGATGAAGTATTTATCAGATACCAAAA
CAGCACAAATGGGACGTGATCTTTTTGTCCATGCTTTATTCCTGGACAAA
CGGTTCTTTGATGAAACTAAGAACATCCACAGCTATATGAATGTCCAATC
GTTGCACGATCTTCTCTTCGATACTATACCTAACATCATTACTTCGGTGG
CACGTTACTTCGTAGTGTGCTACTATCTCATCAGTATGGATTTGAATCTT
GGTTTGGCGTCTGTCTTCTTTACGACCTTCTTCAATTACTTCATCGTGAG
CTACTTCATCAAACGAGACATTGAAAGGTGGAAGAAACAGGTATGATGAA
TACTTTAATTCACCGATGAGTATTCTCTCTTTCCAAAAGAGAATATCGCT
TCGCGCTATTGTGTTTGCATATACACGCAATAGTAGATAAAGCCACAGCA
GAATTCATAAAGGCAACACTTCTAATGAGCCAGAAATCTCCTCTTTTATA
AAGAGCCTTAACCAGTTTTCAAGCAACTTTAGCTAAAAGATTTGTATGTA
AACATAACCTAATTAGGGCTTTTATTTACTGAATTGGTCACAATTCCAAC
CACCTTTCCATTCCAGGTACAAATCGATCGTGTACATGGTCAAATTTCGT
ACGACGTTTTTGAGATGATCAGTACAGTGAAAACATTCGCCAAAGAACGA
TACCATCAACGCGAGTATGACGAGTGGTTCGAATCACTTATTCAAAGCAT
GAAAAAAGGTAAGGGGAAAGAATATTGAACATGGAAAATGGAAAATGATC
TCATAGCCTAATTTTGGCCTATATTTACCTTATTTTTGTACATTTATCCT
AAATGAAAAGTGCAAAGTAAAACCTTTAAAAGGTTCACATTTGACATTTT
TAAAAAGTCTCACACTCTTAGTCTTTTCACTGTTAAAGGTTCTCAAAAAA
ATAGTTAATGATCTTTTCATATTTTCAGGAATGAGTTGGGAATACTTCAG
AAGCTTTTTGGAAGACTTCATTGATGCTTGTGAATACATCGGAATGATTT
ACTACGGCTACATTCGCTACACGGGTGACAGTGGCATGACGTCATCTGAT
TTCATTGGATTTATTATTCTATATCAACAACTTCATGGGTTGTTTTGTGA
AGTAAGAGATAACTTGATGTGGGTGGGACGTGGTTTCCATGATGTTAAGA
GATGCACAACTCTCAGAGAAACGCAACCAAAGATGATTAACGGCACCAAT
AAACCAGAAAACATCAAAGGTATGAATTTTGAATTTACATTGAAAAACAT
AGAAAAAAACACGTGGGAAAATGGTTGAAATGCATACCGTACCATACCAT
CTTTTGCATACCTGGCGACCAACTGAAAGTCTTAAGCTTCAAAAGCTTGT
CCTTTGATTAAAAGACATCAATATATAAAAATAATATAGAGAAAGGCGAG
AATTCGAAAACCATTCCCATTAAATGACCAAACAACCAAACAGCCATACC
TCATCATAATTATACTTTTTCAATTTATTATTTCAGGAGAAATTGTTTTC
AAGGATGTCAAATTCAAATATCCGTCTCGACCCAAAGACCAAGTTTTGAA
GGGCTTGAATCTGACAATTAAATCCAATTGTATGACTGCAATCGTTGGAA
AATCAGGAGCCGGGAAAAGCACCATTGCAAAACTGGTAACTCGTCTTTAT
GACCCCTCATCTGGTTCCATCACCGTAGATGGTGAAGATCTGAAGTCCTT
CGATGTCGAGTATTTCAGATCCAATCTGGCAGTCGTCGATCAGAGCCCTG
AGCTATTTAACAGACCACTTGCTGAGAATATCGCGTATGGAATGGTCGAT
TCTGATCAATGTACCTATGCTGAATTGGAAGCTGCTGGGAAATTAGCCAA
TTGTGATTTCATATCAAAATTTCGTGAAGGATATTATACGTTTGCTGGGT
ATGGAGGGAATGATTTGTCAGGTGGACAGTTACAGAGAATTGCAATCGCC
CGCGCGGCCATAAGGAATCCAAAGATTTTGATATTGGACGAAGCTACATC
ATCGCTAGATTCTGAGAACGAGAAAGAGGTTCAAGAGGCGTTGGAGAAAT
TGATGAAAGGACGAACCGTCATTGTGATTGCGCACCGGTTGAGTACCATT
CGAAATGCTGATAATATCGTGTGCATGAAAGACGGGACTGTTGTGGAGCA
AGGTACCCATGACGACCTGATGGAGAAAAANCACCAATAAACCAGAAAAC
ATCAAAGGTATGAATTTTGAATTTACATTGAAAAACATAGAAAAAAAACA
CGTGGGAAAATGGTTGAAATGCATACCGTACCATACCATCTTTTGCATAC
CTGGCGACCAACTGAAAGTCTTAAGCTTCAAAAGCTTGTCCTTTAATAAA
AGACATCAGTGTATAAAAATAATGTCATAGAGAAAGGCGAGAATTCGAAA
ACCATAATCCCATTAAATGACATAACAACCAAACAGCCATACCTCATCAT
AATTATACTTTTTCAATTTATTATTTCAGGAGAAATTGTTTTCAAGGATG
TCAAATTCAAATATCCGTCTCGACCCAAAGACCAAGTTTTGAAGGGCTTG
AATCTGACAATTAAATCCAATTGTATGACTGCAATCGTTGGAAAATCAGG
AGCCGGGAAAAGCACCATTGCAAAACTGGTAACTCGTCTTTATGACCCCT
CATCTGGTTCCATCACCGTAGATGGCGAGGATCTGAAGTCCTTCGATGTC
GAGTATTTCAGATCCAATCTGGCAGTCGTCGATCAGAGCCCTGAGCTATT
TAACAGACCACTTGCTGAGAATATCGCGTATGGAATGGTCGATTCTGATC
AATGTACCTATGCTGAATTGGAAGCTGCTGGGAAATTAGCCAATTGTGAT
TTCATATCAAAATTTCGTGAAGGATATTATACGTTTGCTGGGTATGGAGG
GAATGATTTGTCAGGTGGACAGTTACAGAGAATTGCAATCGCCCGCGCGG
CCATAAGGAATCCAAAGATTTTGATATTGGACGAAGCTACATCATCGCTA
GATTCTGAGAACGAGAAAGAGGTTCAAGAGGCGTTGGAGAAATTGATGAA
AGGACGAACCGTCATTGTGATTGCGCACCGGTTGAGTACCATTCGAAATG
CTGATAATATCGTGTGCATGAAAGACGGGACTGTTGTGGAGCAAGGTACC
CATGACGACCTGATGGAGAAAAAAGGTGCATATCATAAGTTGATCTCTCA
ACAAATTTTGGAAGACAAGAAAAAGAAAGGTGACGAAGGCGGAGAGCAGA
AAAGTGTTGATGGTGAAGAGCAGAAAAGTGATGTCGAAGGTGTTGATGTT
AAAAATGGTGAGAAAATTGTTGAAAAGAGTGTCGGAAACAAGGTTGACAA
CGAAGAAAATGTTAAAAATGTTGATGGGGAAGCTAACAATGTTGATGGAA
TAGATGATAGCGAAGAAAAGGAGAAGGCCATTGAAAGTGCCGTAGAAAGT
GCCGTTGAAAGTGCTGCAAACAGTGTTGACGAAAAGGAGATTGCTGATAA
GGATACCATGGAAGTTGAAAACCTTGGTGAGATTGTTGAAACAAAACAAC
CTGTGACAACTTGGGGTCCGTACAGCGTGAATGAAAACAGTGAAAATAAC
GAAGAAAAAGCTCCAGGCGGTACTACCATTAAGGGAGAAAACGATAGTTC
AGTTGAAACTACAAGTGGAAACAAAGAAGAGACCGCTGAAAAGACTGGTG
ACAACAGCCTGCTTTGAAGCCTGTATAGTTATTTGCTATTACTTATTTTA
ATTTATAAACATTTTTTGTAATAACCTTTGTAGACAATTTTGATAATATT
TAATTATAGGAATTTTAGGACACACTTTTAAAACGTTATTTGGTTCAATT
CAGTAAATCAACGATCTTTCTTTGAAATTGAGTTTAAGATGCCATGGTAT
TTGTGTTAGATTCAATCAAAAGAAATTTTCAATATGTACAATATTTTAGG
ATATAATTATTTACAAAATACTTTGGAAAAATACCTCAAATAGTTTGTTG
TTATTGAGTAGAAATAAGAAAAGTCCATTCGCTTTGAATGTGCACTACTG
TTTGCTACCATGTGGAAACCATGTCAGGGAGTAATTCCCTTGAGAGTGGT
TTCTATATGGTACCAAAAGCAAATACACACTTAAAGCGACATAAAAGTAG
TAAAATGTAAACATTGCGCGAACCACGTGTCATTAAAGAGAACAATTAAA
ATCACGTGTCCAAAACAAACTTGTCAAACAATTGAACAATCAAAATTAGC
CATATTTGGTTTAATTTTTTTTATTTTGACATGTGACATTTGTTTTGATT
TTGTAGCCGCTGCATACAGTTTGTTTACTCAAGGTTTAGTTAATCCCCGC
ATTCCACGAGGACGGAAGAAACTTTCACGACATTTAGGCGACAACAAAGG
TTTGAAGAAACATATAATGTGATTTTCAGTCTGGCTTACACAATCATTAT
TTTGATCCACGCAAAGCCTAAGATTCAAATAACAAAACGGCTCAAAAAAT
TCGTAAATAAAAAAGAATACAAAAATACAATTATGATTTAAAAAACGAAA
AAACAAACAGAATGTACAGTGACATACAAAAAACGATAGGAGATTTCGTA
CATTCACCAAAATAATTACATTTTTGTCATTTTTCAATCGAACACTACTT
TATTTACAGTACATGTAAAAATCTCTGATGAGATTGAAACACAATAGCCA
AATGAGCATTAGTATACCATAAGTTGGTATGAGATGTTGAAATTTCTTAC
TGTTTTTAACAAATTCATCAAACCAAACCACCAGTTCTGCAACAAACACG
ATTTAAACATCCTTGATTTTGACATCCATTGGCAGAATAATCATAATCTG
TTGCAATGTTATCACAGTATGAAAGTTCATTAAGATCAAGGTTCGGACAA
CTAGTGACCAGGTTCTCAATACCTGCACTGGTGACATTGATGCAACCTGA
TAGGTCCAAATGACGTAATTTTTGCAGACAACCATGTTTAGTTAACGCCC
TGAAAATTTAAAAATATATTGAGTTTCATAGAAAGGACAGCCTGATCCCC
TTTTTTGTATCTCCCCTTTCGAGGAAAATTTCCAGACTCCCACTTCTCGG
AACTTTTAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042207	XLOC_042207	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_471	supercontig	scaffold_471:85205..95013 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.3909	0.664747	0.605969	0.556623	12.9098	10.1063	6.99539	6.44074	2.22312	2.63158	2.46446	1.71738	13.2374	11.5735	4.69356	4.86928	11.9017	19.2158	16.7147	20.3394	10.0423	9.99629	6.32967	7.47387	11.4716	9.58727	58.193	46.779	2.94017	2.50432

Blast

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BLAST of TCONS_00067594 vs. Swiss-Prot (Human)
Match: MDR3 (Phosphatidylcholine translocator ABCB4 OS=Homo sapiens GN=ABCB4 PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 4.194e-67
Identity = 135/250 (54.00%), Postives = 177/250 (70.80%), Query Frame = 2

Query: 2765 NKPENIKGEIVFKDVKFKYPSRPKDQVLKGLNLTIKSNCMTAIVGKSGAGKSTIAKLVTRLYDPSSGSITVDGEDLKSFDVEYFRSNLAVVDQSPELFNRPLAENIAYGMVDSDQCTYAELEAAGKLANC-DFISKFREGYYTFAGYGGNDLSGGQLQXXXXXXXXXXNPKILILDEATSSLDSENEKEVQEALEKLMKGRTVIVIAHRLSTIRNADNIVCMKDGTVVEQGTHDDLMEKKGAYHKLISQQ 3511
            +KP++IKG + F DV F YPSR   ++LKGLNL ++S    A+VG SG GKST  +L+ RLYDP  G+I +DG+D+++F+V Y R  + VV Q P LF+  +AENI YG       T  E++ A K AN  +FI K  + + T  G  G  LSGGQ QRIAIARA +RNPKIL+LDEATS+LD+E+E EVQ AL+K  +GRT IVIAHRLST+RNAD I   +DG +VEQG+H +LM+K+G Y KL++ Q
Sbjct:  385 HKPDSIKGNLEFNDVHFSYPSRANVKILKGLNLKVQSGQTVALVGSSGCGKSTTVQLIQRLYDPDEGTINIDGQDIRNFNVNYLREIIGVVSQEPVLFSTTIAENICYG---RGNVTMDEIKKAVKEANAYEFIMKLPQKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELMKKEGVYFKLVNMQ 631

HSP 2 Score: 216.853 bits (551), Expect = 1.393e-56
Identity = 127/256 (49.61%), Postives = 168/256 (65.62%), Query Frame = 2

Query: 2768 KPENIKGEIVFKDVKFKYPSRPKDQVLKGLNLTIKSNCMTAIVGKSGAGKSTIAKLVTRLYDPSSGSITVD-------GEDLKSFDVEYFRSNLAVVDQSPELFNRPLAENIAYGMVDSDQCTYAELEAAGKLANCD-FISKFREGYYTFAGYGGNDLSGGQLQXXXXXXXXXXNPKILILDEATSSLDSENEKEVQEALEKLMKGRTVIVIAHRLSTIRNADNIVCMKDGTVVEQGTHDDLMEKKGAYHKLISQQ 3511
            KP+  +G I F +V F YP+R    VL+GL+L +K     A+VG SG GKST+ +L+ R YDP +G++ VD       G++ K  +V++ R+ L +V Q P LF+  +AENIAYG  +S   +  E+ +A K AN   FI      Y T  G  G  LSGGQ QRIAIARA IR P+IL+LDEATS+LD+E+EK VQEAL+K  +GRT IVIAHRLSTI+NAD IV  ++G V E GTH  L+ +KG Y  ++S Q
Sbjct: 1026 KPDKFEGNITFNEVVFNYPTRANVPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGTVFVDFGFQLLDGQEAKKLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD-NSRVVSQDEIVSAAKAANIHPFIETLPHKYETRVGDKGTQLSGGQKQRIAIARALIRQPQILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMVSVQ 1280

The following BLAST results are available for this feature:

BLAST of TCONS_00067594 vs. Swiss-Prot (Human)

BLAST of TCONS_00067594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
MDR3	4.194e-67	54.00	Phosphatidylcholine translocator ABCB4 OS=Homo sap...	[more]

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TCONS_00067594 (transcript) - C. hemisphaerica

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