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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067579 ID=TCONS_00067579|Name=TCONS_00067579|organism=Clytia hemisphaerica|type=transcript|length=5296bpRun BLAST on NCBI transcript from alignment at scaffold_471:398628..411171+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067579 ID=TCONS_00067579|Name=TCONS_00067579|organism=Clytia hemisphaerica|type=transcript|length=12544bp|location=Sequence derived from alignment at scaffold_471:398628..411171+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067579 vs. Swiss-Prot (Human)
Match: SHQ1 (Protein SHQ1 homolog OS=Homo sapiens GN=SHQ1 PE=1 SV=2) HSP 1 Score: 221.476 bits (563), Expect = 1.074e-84 Identity = 112/289 (38.75%), Postives = 176/289 (60.90%), Query Frame = 1
Query: 463 DWDW-CQQTSSQNVED--LTGKYKYGFANSFQDALSKFQEETEEFIDIPSPDTTSHAERRKLRIHHENNHFNVEHYMADYVEWDNMSSLVNFAPPWLSK-------MKNSEEKNEHFDMLHFTDEEEKMLTLLPNKDYLLSSLDERKCLLSLVDLLFAYCYDHRTTEGENTSESPWTICKLSSTLSWFDSFQTIDEVVVNCCRRALCYPLYRNWQLILIIWNDVKEIMMAGKVCIIKCLLDMRGILMRDESRYILNELYVNHYIVWVQKVSLQRLSSIAEALKEKDIQK 1299
++DW +QT + V + L + YGF N L + Q+E + IDI PD T AERR+ R+ E F+ +HY+AD+ E + + ++ + P W K ++ S+E+ H ++ F++EE+ L NK YLL R+ SL+D+L AYCY+ R TEGE ES W I KLS TL WF+++ + +++V+ RR LCYPLYR+++L++ + D +I+ GK ++KCLLD+ I ++ YILN+LY++ Y VW+QKV ++L+++AEALKE + K
Sbjct: 124 EFDWEIEQTPCEEVSESALNPQCHYGFGNLRSGVLQRLQDELSDVIDIKDPDFTPAAERRQKRLAAELAKFDPDHYLADFFEDEAIEQILKYNPWWTDKYSKMMAFLEKSQEQENHATLVSFSEEEKYQLRKFVNKSYLLDKRACRQVCYSLIDILLAYCYETRVTEGEKNVESAWNIRKLSPTLCWFETWTNVHDIMVSFGRRVLCYPLYRHFKLVMKAYRDTIKILQLGKSAVLKCLLDIHKIFQENDPAYILNDLYISDYCVWIQKVKSKKLAALAEALKEVSLTK 412 HSP 2 Score: 114.005 bits (284), Expect = 1.074e-84 Identity = 55/119 (46.22%), Postives = 75/119 (63.03%), Query Frame = 3
Query: 9 MITPLFKIRQDDDNLFIDIYAKFVKANDVEIYVEGNMFKFYVKPYFLRLNLPGKLCEECEESGKYDVGEGIFQFKLKKATPGEFFQDLDMITTLMATRKELQI-PLIEEISTGIINKRV 362
M+TP F + QD D L I I + + ++ ++Y EG+ FKFY KPYFLRL LPG++ E E G YD +GIF +L K TPG+ F+ L+M+T L+A RK PL+EEI I + V
Sbjct: 1 MLTPAFDLSQDPDFLTIAIRVPYARVSEFDVYFEGSDFKFYAKPYFLRLTLPGRIVENGSEQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPRKSRTAKPLVEEIGASEIPEEV 119 The following BLAST results are available for this feature:
BLAST of TCONS_00067579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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