TCONS_00067566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067566
Unique NameTCONS_00067566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067566 ID=TCONS_00067566|Name=TCONS_00067566|organism=Clytia hemisphaerica|type=transcript|length=1303bp
cttttagtGATATAAAGTGCAAAATGACTGATTATAAGAAATTTGATCCG
TTAGAACATGGCCTTGATGCTACATTTCGATTCACAAATTACACCAAATT
GAAGGGGTGAGGTTGCAAAGTCCCTCAGGAGGAATTGCACAAACTTCTTG
AGGGACTGAAACAAGATCAAACCAAAAGCAATGGTTCAACAACAGGAGAT
TTTGGATTCCTTGGTATTGGCTTAGATTCTTGTGTATTACCGACACGTCA
TAAAGGCGTCAAACTCGTGCAAACTACTGACTTTTTCTATCCTTTAGTGG
ATGACCCTTACATGCAAGGGAAAATTGCATGTGCTAATGTTTTGAGTGAT
TTGTATGCGACTGGTGTATACCAATGTGACAATTTACTGATGTTACTTGG
CGTGAGTAATGAACTGAGAACCAATGAACGAGAAATTGTTACCAGGCAGG
TAATCAAAGGTTTCAATGATTTAGCCAAAGAAGCCGAAACAACAATCAAT
GGTGGACAAACCGTTTTGAATCCTTGGTATATCATTGGTGGTGTGGCGAC
CAGTATATGCTCTGATCAAGAATTCATCATGCCAAATGGAGGGAAAGCTG
GGGATGTCTTGGTTCTGACAAAACCACTTGGAACACAGATTGCTGTCAAT
GCCCATCAATGGATTGAAGAgCCAAAATATTGGGAAAGGATACAAGATGT
AGTGAACAAAGAAGATGTAGTGGATGCTTACAACAAAGCTATGTTCTCCA
TGGCCAGGTTGAATAGAAATGCTGCAAAACTGATGCAAAAATACCAAGCA
CATGGTGCAACAGATGTGACTGGGTTTGGGATCATTGGCCATGCTACGAA
CTTGGTGGAGAGCCAGTTAGAGAAAGTGGATTTCATTCTTCACACACTTC
CCATCATCAAGGATATGGTGAATGTTTATAAAAAGTGTGGCATCAATTTC
AAATTGTTAGATGGATATTCTGCGGAAACGTCAGGTGGTCTCTTGGTTTG
CTTGGCAAAAGATGTTGCTAATGATTACATTGCAGAACTAAAGGAGTTGG
ATGGTGCAGATGCATGGATCATTGGGGATGTCGTCGAAGGGGGTAGAAAG
GCTAAAATCACACCACATGTTCAAATAATAGAAGTTTAAATCTACCTCGT
GACAAAAGGCCATTTTATGAAgctcttttttgaaaagcttgtCTGGAAAA
GAGCTGATTTATTTTTATGGTTCTTTTGTATTAGTACTGGTATTTTTAGG
CTACTTTTTAATGTAAAAACGAAAGAAATACAAACATACTACTCCGAGCA
TAA
Run BLAST on NCBI

protein sequence of TCONS_00067566-protein

>TCONS_00067566-protein ID=TCONS_00067566-protein|Name=TCONS_00067566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MQGKIACANVLSDLYATGVYQCDNLLMLLGVSNELRTNEREIVTRQVIKG
FNDLAKEAETTINGGQTVLNPWYIIGGVATSICSDQEFIMPNGGKAGDVL
VLTKPLGTQIAVNAHQWIEEPKYWERIQDVVNKEDVVDAYNKAMFSMARL
NRNAAKLMQKYQAHGATDVTGFGIIGHATNLVESQLEKVDFILHTLPIIK
DMVNVYKKCGINFKLLDGYSAETSGGLLVCLAKDVANDYIAELKELDGAD
AWIIGDVVEGGRKAKITPHVQIIEV
Run BLAST on NCBI

transcript from alignment at scaffold_471:343178..345379+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067566 ID=TCONS_00067566|Name=TCONS_00067566|organism=Clytia hemisphaerica|type=transcript|length=2202bp|location=Sequence derived from alignment at scaffold_471:343178..345379+ (Clytia hemisphaerica)
cttttagtGATATAAAGTGCAAAATGACTGATTATAAGAAATTTGATCCG
TTAGAACATGGCCTTGATGCTACATTTCGATTCACAAATTACACCAAATT
GAAGGGGTGAGGTTGCAAAGTCCCTCAGGAGGTTAGTTTCAATTGCAAAT
TATTTATTGTATCAGATTATATAAAAGTGAATATCCATTAATGATCGGTT
TGTTGAACTATCTGTAAGGATTTCCGATAAAATGTTTTACCCGttgaaaa
tgtattttctttctattttacAAGGAATTGCACAAACTTCTTGAGGGACT
GAAACAAGATCAAACCAAAAGCAATGGTTCAACAACAGGAGATTTTGGAT
TCCTTGGTATTGGCTTAGATTCTTGTGTATTACCGACACGTCATAAAGGC
GTCAAACTCGTGCAAACTACTGACTTTTTCTATCCTTTAGTGGATGACCC
TTACATGCAAGGGAAAATTGCATGTGCTAATGTTTTGAGTGATTTGTATG
CGACTGGTGTATACCAATGTGACAATTTACTGATGTTACTTGGCGTGAGT
AATGAACTGAGAACCAATGAACGAGAAATTGTTACCAGGCAGGTAATCAA
AGGTTTCAATGATTTAGCCAAAGAAGCCGAAACAACAATCAATGGTGGAC
AAACCGTTTTGAATCCTTGGTATATCATTGGTGGTGTGGCGACCAGTATA
TGCTCTGATCAAGAATTCATCATGTTTGTagcttttaactttttctatta
tagatttttcttgaatttacAGACATCAACAATCTTTTTTCACAATTAGT
AACTTTTGGTACGTTTGTGAGCTTTTCAAGCAATAATGTTTTTTCAATAT
AGGCGTTTAGTGTTACTTTCATTTAGGCCAAATGGAGGGAAAGCTGGGGA
TGTCTTGGTTCTGACAAAACCACTTGGAACACAGATTGCTGTCAATGCCC
ATCAATGGATTGAAGAggttttttttgcttatgtTGTATTAACTGTCTTG
TCATTTTATAATCATTCCTGCCCTAGTTATTGTTGCTTACATCCGAGAAA
CTTTTCTTTGTTATCCATGTTTGTATTATGTTCATTTGAATCCATGGATA
GTGCTTTTTCCAACTGGAAacttattttttgtttcctcTCATAATTTTAT
TCAACCCTCTTCGGTCACCAacaaaattcaatttaaaatctaattttatt
tcttaatgTTAACTCCTTGCATGTTGCTTTTGAAGAACTTGTTTTTATTG
TGAGGCAACGAAGGCTTCGATGGGACCGAATGGTAGAAAAATCTTAAAGA
cttggtaattttttttgtctaaTACAGGACTACTTTTAATTCTCAATCGT
TAAACCAATGTTTCTTTGCTTTTGATTTCAGCCAAAATATTGGGAAAGGA
TACAAGATGTAGTGAACAAAGAAGATGTAGTGGATGCTTACAACAAAGCT
ATGTTCTCCATGGCCAGGTTGAATAGAAATGCTGCAAAACTGATGCAAAA
ATACCAAGCACATGGTGCAACAGATGTGACTGGGTTTGGGATCATTGGCC
ATGCTACGAACTTGGTGGAGAGCCAGTTAGAGAAAGTGGATTTCATTCTT
CACACACTTCCCATCATCAAGGATATGGTGAATGTTTATAAAAAGTGTGG
CATCAATTTCAAATTGTTAGATGGATATTCTGCGGAAACGTCAGGTGAGG
CTGAAGATTTTATAATGAgtgataatgtttttttgagGTCATGAGATGAT
TTTTTCTCAGCAATAACTATAATTAGGTCTCAGTTGTTAGGAAAGAGCTC
AAGTTCAGTTCGACTTTCTTGCTATAATTTCTTATCGTATTGGCATtata
aaaatgatcaaatttcGTATCACTTGGTTTTAGGTGGTCTCTTGGTTTGC
TTGGCAAAAGATGTTGCTAATGATTACATTGCAGAACTAAAGGAGTTGGA
TGGTGCAGATGCATGGATCATTGGGGATGTCGTCGAAGGGGGTAGAAAGG
CTAAAATCACACCACATGTTCAAATAATAGAAGTTTAAATCTACCTCGTG
ACAAAAGGCCATTTTATGAAgctcttttttgaaaagcttgtCTGGAAAAG
AGCTGATTTATTTTTATGGTTCTTTTGTATTAGTACTGGTATTTTTAGGC
TACTTTTTAATGTAAAAACGAAAGAAATACAAACATACTACTCCGAGCAT
AA

Coding sequence (CDS) from alignment at scaffold_471:343178..345379+

>TCONS_00067566 ID=TCONS_00067566|Name=TCONS_00067566|organism=Clytia hemisphaerica|type=CDS|length=3312bp|location=Sequence derived from alignment at scaffold_471:343178..345379+ (Clytia hemisphaerica)
ATGCAAGGGAAAATTGCATGTGCTAATGTTTTGAGTGATTTGTATGCGAC
TGGTGTATACCAATGTGACAATTTACTGATGTTACTTGGCGTGAGTAATG
AACTGAGAACCAATGAACGAGAAATTGTTACCAGGCAGGTAATCAAAGGT
TTCAATGATTTAGCCAAAGAAGCCGAAACAACAATCAATGGTGGACAAAC
CGTTTTGAATCCTTGGTATATCATTGGTGGTGTGGCGACCAGTATATGCT
CTGATCAAGAATTCATCATGCCAAATGGAGGGAAAGCTGGGGATGTCTTG
GTTCTGACAAAACCACTTGGAACACAGATTGCTGTCAATGCCCATCAATG
GATTGAAGAgCCAAAATATTGGGAAAGGATACAAGATGTAGTGAACAAAG
AAGATGTAGTGGATGCTTACAACAAAGCTATGTTCTCCATGGCCAGGTTG
AATAGAAATGCTGCAAAACTGATGCAAAAATACCAAGCACATGGTGCAAC
AGATGTGACTGGGTTTGGGATCATTGGCCATGCTACGAACTTGGTGGAGA
GCCAGTTAGAGAAAGTGGATTTCATTCTTCACACACTTCCCATCATCAAG
GATATGGTGAATGTTTATAAAAAGTGTGGCATCAATTTCAAATTGTTAGA
TGGATATTCTGCGGAAACGTCAGGTGGTCTCTTGGTTTGCTTGGCAAAAG
ATGTTGCTAATGATTACATTGCAGAACTAAAGGAGTTGGATGGTGCAGAT
GCATGGATCATTGGGGATGTCGTCGAAGGGGGTAGAAAGGCTAAAATCAC
ACCACATGTTCAAATAATAGAAGTTTAAATGCAAGGGAAAATTGCATGTG
CTAATGTTTTGAGTGATTTGTATGCGACTGGTGTATACCAATGTGACAAT
TTACTGATGTTACTTGGCGTGAGTAATGAACTGAGAACCAATGAACGAGA
AATTGTTACCAGGCAGGTAATCAAAGGTTTCAATGATTTAGCCAAAGAAG
CCGAAACAACAATCAATGGTGGACAAACCGTTTTGAATCCTTGGTATATC
ATTGGTGGTGTGGCGACCAGTATATGCTCTGATCAAGAATTCATCATGCC
AAATGGAGGGAAAGCTGGGGATGTCTTGGTTCTGACAAAACCACTTGGAA
CACAGATTGCTGTCAATGCCCATCAATGGATTGAAGAgCCAAAATATTGG
GAAAGGATACAAGATGTAGTGAACAAAGAAGATGTAGTGGATGCTTACAA
CAAAGCTATGTTCTCCATGGCCAGGTTGAATAGAAATGCTGCAAAACTGA
TGCAAAAATACCAAGCACATGGTGCAACAGATGTGACTGGGTTTGGGATC
ATTGGCCATGCTACGAACTTGGTGGAGAGCCAGTTAGAGAAAGTGGATTT
CATTCTTCACACACTTCCCATCATCAAGGATATGGTGAATGTTTATAAAA
AGTGTGGCATCAATTTCAAATTGTTAGATGGATATTCTGCGGAAACGTCA
GGTGGTCTCTTGGTTTGCTTGGCAAAAGATGTTGCTAATGATTACATTGC
AGAACTAAAGGAGTTGGATGGTGCAGATGCATGGATCATTGGGGATGTCG
TCGAAGGGGGTAGAAAGGCTAAAATCACACCACATGTTCAAATAATAGAA
GTTTAAATGCAAGGGAAAATTGCATGTGCTAATGTTTTGAGTGATTTGTA
TGCGACTGGTGTATACCAATGTGACAATTTACTGATGTTACTTGGCGTGA
GTAATGAACTGAGAACCAATGAACGAGAAATTGTTACCAGGCAGGTAATC
AAAGGTTTCAATGATTTAGCCAAAGAAGCCGAAACAACAATCAATGGTGG
ACAAACCGTTTTGAATCCTTGGTATATCATTGGTGGTGTGGCGACCAGTA
TATGCTCTGATCAAGAATTCATCATGCCAAATGGAGGGAAAGCTGGGGAT
GTCTTGGTTCTGACAAAACCACTTGGAACACAGATTGCTGTCAATGCCCA
TCAATGGATTGAAGAgCCAAAATATTGGGAAAGGATACAAGATGTAGTGA
ACAAAGAAGATGTAGTGGATGCTTACAACAAAGCTATGTTCTCCATGGCC
AGGTTGAATAGAAATGCTGCAAAACTGATGCAAAAATACCAAGCACATGG
TGCAACAGATGTGACTGGGTTTGGGATCATTGGCCATGCTACGAACTTGG
TGGAGAGCCAGTTAGAGAAAGTGGATTTCATTCTTCACACACTTCCCATC
ATCAAGGATATGGTGAATGTTTATAAAAAGTGTGGCATCAATTTCAAATT
GTTAGATGGATATTCTGCGGAAACGTCAGGTGGTCTCTTGGTTTGCTTGG
CAAAAGATGTTGCTAATGATTACATTGCAGAACTAAAGGAGTTGGATGGT
GCAGATGCATGGATCATTGGGGATGTCGTCGAAGGGGGTAGAAAGGCTAA
AATCACACCACATGTTCAAATAATAGAAGTTTAAATGCAAGGGAAAATTG
CATGTGCTAATGTTTTGAGTGATTTGTATGCGACTGGTGTATACCAATGT
GACAATTTACTGATGTTACTTGGCGTGAGTAATGAACTGAGAACCAATGA
ACGAGAAATTGTTACCAGGCAGGTAATCAAAGGTTTCAATGATTTAGCCA
AAGAAGCCGAAACAACAATCAATGGTGGACAAACCGTTTTGAATCCTTGG
TATATCATTGGTGGTGTGGCGACCAGTATATGCTCTGATCAAGAATTCAT
CATGCCAAATGGAGGGAAAGCTGGGGATGTCTTGGTTCTGACAAAACCAC
TTGGAACACAGATTGCTGTCAATGCCCATCAATGGATTGAAGAgCCAAAA
TATTGGGAAAGGATACAAGATGTAGTGAACAAAGAAGATGTAGTGGATGC
TTACAACAAAGCTATGTTCTCCATGGCCAGGTTGAATAGAAATGCTGCAA
AACTGATGCAAAAATACCAAGCACATGGTGCAACAGATGTGACTGGGTTT
GGGATCATTGGCCATGCTACGAACTTGGTGGAGAGCCAGTTAGAGAAAGT
GGATTTCATTCTTCACACACTTCCCATCATCAAGGATATGGTGAATGTTT
ATAAAAAGTGTGGCATCAATTTCAAATTGTTAGATGGATATTCTGCGGAA
ACGTCAGGTGGTCTCTTGGTTTGCTTGGCAAAAGATGTTGCTAATGATTA
CATTGCAGAACTAAAGGAGTTGGATGGTGCAGATGCATGGATCATTGGGG
ATGTCGTCGAAGGGGGTAGAAAGGCTAAAATCACACCACATGTTCAAATA
ATAGAAGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042195XLOC_042195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067566-exon-scaffold_471-1491911889:343178..343308TCONS_00067566-exon-scaffold_471-1491911889:343178..343308Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1510915933:343178..343308TCONS_00067566-exon-scaffold_471-1510915933:343178..343308Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1575043694:343178..343308TCONS_00067566-exon-scaffold_471-1575043694:343178..343308Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1491911889:343452..343900TCONS_00067566-exon-scaffold_471-1491911889:343452..343900Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1510915933:343452..343900TCONS_00067566-exon-scaffold_471-1510915933:343452..343900Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1575043694:343452..343900TCONS_00067566-exon-scaffold_471-1575043694:343452..343900Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1491911889:344054..344144TCONS_00067566-exon-scaffold_471-1491911889:344054..344144Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1510915933:344054..344144TCONS_00067566-exon-scaffold_471-1510915933:344054..344144Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1575043694:344054..344144TCONS_00067566-exon-scaffold_471-1575043694:344054..344144Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1491911889:344559..344871TCONS_00067566-exon-scaffold_471-1491911889:344559..344871Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1510915933:344559..344871TCONS_00067566-exon-scaffold_471-1510915933:344559..344871Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1575043694:344559..344871TCONS_00067566-exon-scaffold_471-1575043694:344559..344871Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1491911889:345061..345379TCONS_00067566-exon-scaffold_471-1491911889:345061..345379Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1510915933:345061..345379TCONS_00067566-exon-scaffold_471-1510915933:345061..345379Clytia hemisphaericaexon
TCONS_00067566-exon-scaffold_471-1575043694:345061..345379TCONS_00067566-exon-scaffold_471-1575043694:345061..345379Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067566-proteinTCONS_00067566-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_471supercontigscaffold_471:343178..345379 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.1445	13.788	9.0694	6.35838	41.2838	34.4892	44.695	46.722	71.1611	46.8141	53.9813	54.2536	35.0476	35.1206	67.6732	63.4939	61.7136	62.2314	31.8187	35.3883	42.9871	43.4034	46.6645	44.1151	48.9889	48.6622	62.6986	61.7884	53.9551	53.7249
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016188PurM-like_N
IPR010918AIR_synth_C_dom
IPR004536SPS/SelD
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
Blast
[Close]
BLAST of TCONS_00067566 vs. Swiss-Prot (Human)
Match: SPS1 (Selenide, water dikinase 1 OS=Homo sapiens GN=SEPHS1 PE=1 SV=2)

HSP 1 Score: 426.787 bits (1096), Expect = 1.626e-146
Identity = 204/375 (54.40%), Postives = 267/375 (71.20%), Query Frame = 3 
Query:   24 MTDYKKFDPLEHGLDATFRFTNYTKLKG*GCKVPQEELHKLLEGLKQDQTKSNGSTTGD-FGFLGIGLDSCVLPTRHKGVKLVQTTDFFYPLVDDPYMQGKIACANVLSDLYATGVYQCDNLLMLLGVSNELRTNEREIVTRQVIKGFNDLAKEAETTINGGQTVLNPWYIIGGVATSICSDQEFIMPNGGKAGDVLVLTKPLGTQIAVNAHQWIEEPKYWERIQDVVNKEDVVDAYNKAMFSMARLNRNAAKLMQKYQAHGATDVTGFGIIGHATNLVESQLEKVDFILHTLPIIKDMVNVYKKCGINFKLLDGYSAETSGGLLVCLAKDVANDYIAELKEL---DGADAWIIGDVVEGGRKAKITPHVQIIEV 1136
            M+  + F+P  + LD +FR T +T+LKG GCKVPQ+ L KLLE L+++  + +    G     LGIG+D+CV+P RH G+ LVQTTD+ YP+VDDPYM G+IACANVLSDLYA GV +CDN+LMLLGVSN++   ER+ V   +I+GF D A+EA T++ GGQTVLNPW ++GGVAT++C   EFIMP+    GDVLVLTKPLGTQ+AV  HQW++ P+ W +I+ VV +EDV  AY +AM +MARLNR AA LM  + AH ATD+TGFGI+GHA NL + Q  +V F++H LP++  M  V K CG  F L+ G   ETSGGLL+CL ++ A  + AE+K     +G  AWIIG V +G R A+I    +IIEV
Sbjct:    1 MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEV 375
The following BLAST results are available for this feature:
BLAST of TCONS_00067566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPS11.626e-14654.40Selenide, water dikinase 1 OS=Homo sapiens GN=SEPH... [more]
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