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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067564 ID=TCONS_00067564|Name=TCONS_00067564|organism=Clytia hemisphaerica|type=transcript|length=1601bp TGGATGTATTGGTGAGGGAGCCAGTCAGACGCTTCGAAGCAAGAgATAAT GTGCAATACAATTCTTGCCATACTGTTTGGAGGAATGGAAACAGAGCTGG TGTTTCTATATCGAAGATAGTTGGTGCCAGCGGCTATTGTACCGGGCAGG TACGAATTTCAAAACGAACAACCAAAGGGATGGCCAGAACCCCCAAGGAG TTGATGTTCTACACGGCGCGAGGTCCACTTTGGTTTACGGTGAATAGTTC ACATTGGAGGACTCACACCGGGGAATTTACCATCATCCCACAAGGTGAAA AATACGATCTTCAAAACAAGTCGAATCACCAGACGCGTGCAGTCTATTTC AGATAGATCAGAAACTTCAGCCAAATTCGTACCTGCCCAGTACAAAAATC CTCTGGAACTCATTATCTTCGAGAAAAGTAGTCCAGCTTTGCCGCATTCC ATCAACCAATGTGTCAATAATTGTCTTGCACATTATCTCAAATGCCAGAA GAACGATCGAACCATAtagaatgaagaaaaaagaaaaggagtGAAGACCG ATGAAGGGACAACTGGTAGGCATATccttttctttcttgtttttcttcAT TCTTCCTTAATACTGTTTTTTTATTAATGGTGTTTGGTAACTTGTCACTG GTCTGTAAGTTCTAGTCTACAAACGCAAGCGTGCTTACTAAATTCGTCGA TGAGAAAGTCTCTCCATGTCTTAATACAATGTTTCATTCAAATGGGCTGA CAAATATGAAATACATTTTCTGAACCGGTAAACTGCGAACGAACTACTTA GTCCAGGAATAGTTGGAAACCTTTTTCATATATTTCTGCGGTTCTTGTCA CTGTCTTAGATtaatttaataatttgattattCTTTAAGATtccttttca aataaaaatggctACCTTTCCATGTCAGTGTTCATTCTTTGTCTACAAAA TCAGATGCTGTTACGTTTTTCTTCGCGCTCTTAGGTGTTATGTAATCATA CCGTCAGGTTTTATATGGCATTCATATCGAGTCTTTAAATCGGAATCGTC GAATAATAACTTGTCACGATCAATAATTAAATATTCATTTAGTCGGTCCT GCTAGGAATCGGACAGAACATATgcgtatttaaaaaaataagcgcTGAGG GCTaggtagcctatactagacgtcacccgcgtttttttacgcaattaacg tcaattaacgagatgaaaaatcccggtttttagtgaggtgctcgctaagg GCTAAGATAACATCTCTTTGTTGCCAagtaaatttcaaaagtttcgatcT TCCCTGTTTTGGAAAGGCACAAAGTTCGTCTCCACGTTCTTCGGGCTATG ACGTCGATGCACTCTCAGCAACTACAAATTTGTGATGGTTTTGAATTTGG TGTTATTTGAAATCCGTATAAGCCGCTGGCACCCACTATTCTTCAGACGA ATATCTCAATGTCAGCCCCGTTCCGCATAGCCATGTCTTTATAGCCGCTG ATACCAAATATGCCGGCTTTGTCTCCATTCCGCAAAAAATAGTATAGCAA GAATGTTGCACGTTATcgtaaaattgaaataaaatacatcttatatattt t Run BLAST on NCBI transcript from alignment at scaffold_471:271461..275711+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067564 ID=TCONS_00067564|Name=TCONS_00067564|organism=Clytia hemisphaerica|type=transcript|length=4251bp|location=Sequence derived from alignment at scaffold_471:271461..275711+ (Clytia hemisphaerica) TGGATGTATTGGTGAGGGAGCCAGTCAGACGCTTCGAAGCAAGAggtatt
tcaaacaaaaagatcttttttcatGAGAGAacacttttttgggtgaaatt
GTACATTGAGCTTCTGTTATTCCCATCTATAAGAATTGGTtaatatttta
agcttttagCATGTTTAGATAATGGGTATGAAAATTCGATAAATGGGAAA
TATCTACTTTCTGGAAAAGACTACAATTCAAGCAGGTCGAAAAAAAGATT
GTGATATGTATTTTATTTCCCTTTCAAGATAATGTGCAATACAATTCTTG
CCATACTGTTTGGAGGAATGGAAACAGAGCTGGTGTTTCTATATCGAAGA
TAGTTGGTGCCAGCGGCTATTGTACCGGGCAGGTACGAATTTCAAAACGA
ACAACCAAAGGGATGGCCAGAACCCCCAAGGAGTTGGTAAGTCTGCCTCC
ATTGCACCGTTAAAACTATTGTTTATGTGtgatactcttaggttccaaat
aactTATTAGGaccttagactacacaatatattgatgaacaatattttgc
aatatagttttcggaccgtaatatacgaagtaaacaacaggtactctatt
ataaagaggaattttctttctttaaaaatccccctatattgttggtAATA
TAGCTGGCAATATATTGCGGATAGCTTATCAATATATTGCTGGCACTAAG
CAATATATCGTCAATATATtgccaatatattgtgtagtgtatgtagccct
taagaGTAAACACCGTGAATTTAAATACTACAAAATCACGGCGATAAATT
CAAAATGATCCATAAGAGCAAACATATTTTTCAATAGTGTGTAATGGATT
GGTTGTAAATGCGAGGGTTAACTTTTAATAGAGTGCACTATGAAGGTCTC
CCTTTAACTGGACGCACTTTAAGAATGTGATTTGAATAATGATTACTCGC
TGAATTGCAAGTCTTTAGAGTAAATATCTGTATCTTTATAGATTGTAAAG
TCTATAGAGACTTTTTGATTGACGGTTTTAGGATGGAAGACATGTTTCGA
TCTTACATAGTTTAAAAATGACTTTGCATGGTACTTGTCATCgttttaga
gcttttttaaaCTTCTCTGACCCATGACCATAATTTTCGCTATCCTTCGT
TCATGATATGATATTCTGAATTTCGGAGTCGAAAcatttaaagcgtttta
aagctttaagAAACAGAACAAGATTAGTGTAGAATTTTTACACTTTGTAG
AAACTCAGGTCTTTTAACTTTGTGCCCTTgtataaaatcttcaaaactgA
TTCAAAGGAGATGCGgcttattatcattattatttttttgatcaCATAAA
AAAGCACCAGAACTTTCTCTTCCTACAGAGACTATTTGGTCACATCTAGC
ATAAGTGAAGGATCACGCTATAATATACatttgtttgtttgaaaattttc
tattaTTTAGATACTCCGTTCAGTTTTTACTCTTTATTAATACTCTTTCT
CAGATGTTCTACACGGCGCGAGGTCCACTTTGGTTTACGGTGAATAGTTC
ACATTGGAGGACTCACACCGGGGAATTTACCATCATCCCACAAGGTAAGT
GTTTTGATTCACTTCAGGAAAAAATAACTTATTTCTTTGTCAAACTCTGT
TTTGAATTCTACTATCAACCTTAGGCCACTATACTTTCTTTATGTATTCa
gaaatttgatcaattttgcGATTTAATTCTCGCACATATAGTTATCATTG
CTAGTCTTCGTAATTGTTTCCTTAAAGGTTTTTAAGAAAAAGAATGTATC
CCAGTTTGCTAACAGTATTTTGAATGATAAACTTTTCTCGTAGATACATA
ATAGAAAGTTTCTAAAATGTCAGTTTTCGTAAACATTGAATGTAAACTTC
AAtctgttttgtttattgccAGGTGAAAAATACGATCTTCAAAACAAGTC
GAATCACCAGACGCGTGCAGTCTATTTCAGATAGATCAGGTACGTACGTA
ATTTCTTCAATTGATCTATACGacctaaaaaagaattttattaGCAACAT
AccataaaattcttttttcgatTGAATTCCAAAATTCTGTAATAATTATG
ATGAACTATTAAAGATCATAATCGACTCAAGACCTTTCATTGGAGGGAGG
GAGAGGGCGTAGTAGttttataccgggtgacccagaAAAGTGTAAGGGTT
TGGAGGGTACATGTGTCctaattaatttgattttcactgaattcctttTC
CGTTGTAAAGAGGAAAggtaaacttaaaatttggttcataactttttaat
ttttggttcAGTGGTTCTCAAggcttttgaagtcaaaattcaattttgaa
aaatggcaaaaatcatcaaaaagtggGGTATCAAATTGAATGAACACCAT
AACAAAACATTAATGTTAAACCTTGGATTTTAAAAAGTgttaaaattaat
taattattgTTTTTACGACCTTTAACTATCCTTTTGGGAAGTTTTAGcta
gaaaaaaaaaaggttgaaagattTCTTAGGGGCCACCTGAGCCACCTGAA
GCATAATCTTGAATTTTCAACAACAGATAATCTAAAATGCTTTTGATAGT
ATTGTATTTATGGTAGAGCTCGCGGTCGAAGACTTAATTACTTAAAAGTG
CCACGAGACTatatacttttgtttttttgcctaatttagactgaatttta
ttttgaatatcgAACATTTCTCATAGAAACTTCAGCCAAATTCGTACCTG
CCCAGTACAAAAATCCTCTGGAACTCATTATCTTCGAGAAAAGTAGTCCA
GCTTTGCCGCATTCCATCAACCAATGTGTCAATAATTGTCTTGCACATTA
TCTCAAATGCCAGTatgtattttaaaaaaaatcatataacTGTCCTTCCA
TGCTTTACTAAAATACGTCATAAAATGACCTCCCAAATCCTTTCTTATGG
AATTTCTAAAACTATTTTTTAACGAGAAGGAACTTTCGTGAGTCAGGTTC
TCAAAATACTTCACAGAATTAACTTTTGCGAAATACCCGAAAATTTATCA
tcttaatgtggagatttttctaagaaatcttATGAAAATTTCGTTGCCAG
TGAACTCGGTGGATTCTATTAATAAAGGGTCTATTCAATTATTTCAGGAA
GAACGATCGAACCATAtagaatgaagaaaaaagaaaaggagtGAAGACCG
ATGAAGGGACAACTGGTAGGCATATccttttctttcttgtttttcttcAT
TCTTCCTTAATACTGTTTTTTTATTAATGGTGTTTGGTAACTTGTCACTG
GTCTGTAAGTTCTAGTCTACAAACGCAAGCGTGCTTACTAAATTCGTCGA
TGAGAAAGTCTCTCCATGTCTTAATACAATGTTTCATTCAAATGGGCTGA
CAAATATGAAATACATTTTCTGAACCGGTAAACTGCGAACGAACTACTTA
GTCCAGGAATAGTTGGAAACCTTTTTCATATATTTCTGCGGTTCTTGTCA
CTGTCTTAGATtaatttaataatttgattattCTTTAAGATtccttttca
aataaaaatggctACCTTTCCATGTCAGTGTTCATTCTTTGTCTACAAAA
TCAGATGCTGTTACGTTTTTCTTCGCGCTCTTAGGTGTTATGTAATCATA
CCGTCAGGTTTTATATGGCATTCATATCGAGTCTTTAAATCGGAATCGTC
GAATAATAACTTGTCACGATCAATAATTAAATATTCATTTAGTCGGTCCT
GCTAGGAATCGGACAGAACATATgcgtatttaaaaaaataagcgcTGAGG
GCTaggtagcctatactagacgtcacccgcgtttttttacgcaattaacg
tcaattaacgagatgaaaaatcccggtttttagtgaggtgctcgctaagg
GCTAAGATAACATCTCTTTGTTGCCAagtaaatttcaaaagtttcgatcT
TCCCTGTTTTGGAAAGGCACAAAGTTCGTCTCCACGTTCTTCGGGCTATG
ACGTCGATGCACTCTCAGCAACTACAAATTTGTGATGGTTTTGAATTTGG
TGTTATTTGAAATCCGTATAAGCCGCTGGCACCCACTATTCTTCAGACGA
ATATCTCAATGTCAGCCCCGTTCCGCATAGCCATGTCTTTATAGCCGCTG
ATACCAAATATGCCGGCTTTGTCTCCATTCCGCAAAAAATAGTATAGCAA
GAATGTTGCACGTTATcgtaaaattgaaataaaatacatcttatatattt
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067564-exon-scaffold_471-1491911889:271461..271505 | TCONS_00067564-exon-scaffold_471-1491911889:271461..271505 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1510915933:271461..271505 | TCONS_00067564-exon-scaffold_471-1510915933:271461..271505 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1575043694:271461..271505 | TCONS_00067564-exon-scaffold_471-1575043694:271461..271505 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1491911889:271739..271896 | TCONS_00067564-exon-scaffold_471-1491911889:271739..271896 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1510915933:271739..271896 | TCONS_00067564-exon-scaffold_471-1510915933:271739..271896 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1575043694:271739..271896 | TCONS_00067564-exon-scaffold_471-1575043694:271739..271896 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1491911889:272964..273054 | TCONS_00067564-exon-scaffold_471-1491911889:272964..273054 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1510915933:272964..273054 | TCONS_00067564-exon-scaffold_471-1510915933:272964..273054 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1575043694:272964..273054 | TCONS_00067564-exon-scaffold_471-1575043694:272964..273054 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1491911889:273383..273449 | TCONS_00067564-exon-scaffold_471-1491911889:273383..273449 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1510915933:273383..273449 | TCONS_00067564-exon-scaffold_471-1510915933:273383..273449 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1575043694:273383..273449 | TCONS_00067564-exon-scaffold_471-1575043694:273383..273449 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1491911889:274187..274322 | TCONS_00067564-exon-scaffold_471-1491911889:274187..274322 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1510915933:274187..274322 | TCONS_00067564-exon-scaffold_471-1510915933:274187..274322 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1575043694:274187..274322 | TCONS_00067564-exon-scaffold_471-1575043694:274187..274322 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1491911889:274608..275711 | TCONS_00067564-exon-scaffold_471-1491911889:274608..275711 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1510915933:274608..275711 | TCONS_00067564-exon-scaffold_471-1510915933:274608..275711 | Clytia hemisphaerica | exon |
TCONS_00067564-exon-scaffold_471-1575043694:274608..275711 | TCONS_00067564-exon-scaffold_471-1575043694:274608..275711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_471 | supercontig | scaffold_471:271461..275711 + |
Blast
The following BLAST results are available for this feature:
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