TCONS_00067564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067564
Unique NameTCONS_00067564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067564 ID=TCONS_00067564|Name=TCONS_00067564|organism=Clytia hemisphaerica|type=transcript|length=1601bp
TGGATGTATTGGTGAGGGAGCCAGTCAGACGCTTCGAAGCAAGAgATAAT
GTGCAATACAATTCTTGCCATACTGTTTGGAGGAATGGAAACAGAGCTGG
TGTTTCTATATCGAAGATAGTTGGTGCCAGCGGCTATTGTACCGGGCAGG
TACGAATTTCAAAACGAACAACCAAAGGGATGGCCAGAACCCCCAAGGAG
TTGATGTTCTACACGGCGCGAGGTCCACTTTGGTTTACGGTGAATAGTTC
ACATTGGAGGACTCACACCGGGGAATTTACCATCATCCCACAAGGTGAAA
AATACGATCTTCAAAACAAGTCGAATCACCAGACGCGTGCAGTCTATTTC
AGATAGATCAGAAACTTCAGCCAAATTCGTACCTGCCCAGTACAAAAATC
CTCTGGAACTCATTATCTTCGAGAAAAGTAGTCCAGCTTTGCCGCATTCC
ATCAACCAATGTGTCAATAATTGTCTTGCACATTATCTCAAATGCCAGAA
GAACGATCGAACCATAtagaatgaagaaaaaagaaaaggagtGAAGACCG
ATGAAGGGACAACTGGTAGGCATATccttttctttcttgtttttcttcAT
TCTTCCTTAATACTGTTTTTTTATTAATGGTGTTTGGTAACTTGTCACTG
GTCTGTAAGTTCTAGTCTACAAACGCAAGCGTGCTTACTAAATTCGTCGA
TGAGAAAGTCTCTCCATGTCTTAATACAATGTTTCATTCAAATGGGCTGA
CAAATATGAAATACATTTTCTGAACCGGTAAACTGCGAACGAACTACTTA
GTCCAGGAATAGTTGGAAACCTTTTTCATATATTTCTGCGGTTCTTGTCA
CTGTCTTAGATtaatttaataatttgattattCTTTAAGATtccttttca
aataaaaatggctACCTTTCCATGTCAGTGTTCATTCTTTGTCTACAAAA
TCAGATGCTGTTACGTTTTTCTTCGCGCTCTTAGGTGTTATGTAATCATA
CCGTCAGGTTTTATATGGCATTCATATCGAGTCTTTAAATCGGAATCGTC
GAATAATAACTTGTCACGATCAATAATTAAATATTCATTTAGTCGGTCCT
GCTAGGAATCGGACAGAACATATgcgtatttaaaaaaataagcgcTGAGG
GCTaggtagcctatactagacgtcacccgcgtttttttacgcaattaacg
tcaattaacgagatgaaaaatcccggtttttagtgaggtgctcgctaagg
GCTAAGATAACATCTCTTTGTTGCCAagtaaatttcaaaagtttcgatcT
TCCCTGTTTTGGAAAGGCACAAAGTTCGTCTCCACGTTCTTCGGGCTATG
ACGTCGATGCACTCTCAGCAACTACAAATTTGTGATGGTTTTGAATTTGG
TGTTATTTGAAATCCGTATAAGCCGCTGGCACCCACTATTCTTCAGACGA
ATATCTCAATGTCAGCCCCGTTCCGCATAGCCATGTCTTTATAGCCGCTG
ATACCAAATATGCCGGCTTTGTCTCCATTCCGCAAAAAATAGTATAGCAA
GAATGTTGCACGTTATcgtaaaattgaaataaaatacatcttatatattt
t
Run BLAST on NCBI

transcript from alignment at scaffold_471:271461..275711+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067564 ID=TCONS_00067564|Name=TCONS_00067564|organism=Clytia hemisphaerica|type=transcript|length=4251bp|location=Sequence derived from alignment at scaffold_471:271461..275711+ (Clytia hemisphaerica)
TGGATGTATTGGTGAGGGAGCCAGTCAGACGCTTCGAAGCAAGAggtatt
tcaaacaaaaagatcttttttcatGAGAGAacacttttttgggtgaaatt
GTACATTGAGCTTCTGTTATTCCCATCTATAAGAATTGGTtaatatttta
agcttttagCATGTTTAGATAATGGGTATGAAAATTCGATAAATGGGAAA
TATCTACTTTCTGGAAAAGACTACAATTCAAGCAGGTCGAAAAAAAGATT
GTGATATGTATTTTATTTCCCTTTCAAGATAATGTGCAATACAATTCTTG
CCATACTGTTTGGAGGAATGGAAACAGAGCTGGTGTTTCTATATCGAAGA
TAGTTGGTGCCAGCGGCTATTGTACCGGGCAGGTACGAATTTCAAAACGA
ACAACCAAAGGGATGGCCAGAACCCCCAAGGAGTTGGTAAGTCTGCCTCC
ATTGCACCGTTAAAACTATTGTTTATGTGtgatactcttaggttccaaat
aactTATTAGGaccttagactacacaatatattgatgaacaatattttgc
aatatagttttcggaccgtaatatacgaagtaaacaacaggtactctatt
ataaagaggaattttctttctttaaaaatccccctatattgttggtAATA
TAGCTGGCAATATATTGCGGATAGCTTATCAATATATTGCTGGCACTAAG
CAATATATCGTCAATATATtgccaatatattgtgtagtgtatgtagccct
taagaGTAAACACCGTGAATTTAAATACTACAAAATCACGGCGATAAATT
CAAAATGATCCATAAGAGCAAACATATTTTTCAATAGTGTGTAATGGATT
GGTTGTAAATGCGAGGGTTAACTTTTAATAGAGTGCACTATGAAGGTCTC
CCTTTAACTGGACGCACTTTAAGAATGTGATTTGAATAATGATTACTCGC
TGAATTGCAAGTCTTTAGAGTAAATATCTGTATCTTTATAGATTGTAAAG
TCTATAGAGACTTTTTGATTGACGGTTTTAGGATGGAAGACATGTTTCGA
TCTTACATAGTTTAAAAATGACTTTGCATGGTACTTGTCATCgttttaga
gcttttttaaaCTTCTCTGACCCATGACCATAATTTTCGCTATCCTTCGT
TCATGATATGATATTCTGAATTTCGGAGTCGAAAcatttaaagcgtttta
aagctttaagAAACAGAACAAGATTAGTGTAGAATTTTTACACTTTGTAG
AAACTCAGGTCTTTTAACTTTGTGCCCTTgtataaaatcttcaaaactgA
TTCAAAGGAGATGCGgcttattatcattattatttttttgatcaCATAAA
AAAGCACCAGAACTTTCTCTTCCTACAGAGACTATTTGGTCACATCTAGC
ATAAGTGAAGGATCACGCTATAATATACatttgtttgtttgaaaattttc
tattaTTTAGATACTCCGTTCAGTTTTTACTCTTTATTAATACTCTTTCT
CAGATGTTCTACACGGCGCGAGGTCCACTTTGGTTTACGGTGAATAGTTC
ACATTGGAGGACTCACACCGGGGAATTTACCATCATCCCACAAGGTAAGT
GTTTTGATTCACTTCAGGAAAAAATAACTTATTTCTTTGTCAAACTCTGT
TTTGAATTCTACTATCAACCTTAGGCCACTATACTTTCTTTATGTATTCa
gaaatttgatcaattttgcGATTTAATTCTCGCACATATAGTTATCATTG
CTAGTCTTCGTAATTGTTTCCTTAAAGGTTTTTAAGAAAAAGAATGTATC
CCAGTTTGCTAACAGTATTTTGAATGATAAACTTTTCTCGTAGATACATA
ATAGAAAGTTTCTAAAATGTCAGTTTTCGTAAACATTGAATGTAAACTTC
AAtctgttttgtttattgccAGGTGAAAAATACGATCTTCAAAACAAGTC
GAATCACCAGACGCGTGCAGTCTATTTCAGATAGATCAGGTACGTACGTA
ATTTCTTCAATTGATCTATACGacctaaaaaagaattttattaGCAACAT
AccataaaattcttttttcgatTGAATTCCAAAATTCTGTAATAATTATG
ATGAACTATTAAAGATCATAATCGACTCAAGACCTTTCATTGGAGGGAGG
GAGAGGGCGTAGTAGttttataccgggtgacccagaAAAGTGTAAGGGTT
TGGAGGGTACATGTGTCctaattaatttgattttcactgaattcctttTC
CGTTGTAAAGAGGAAAggtaaacttaaaatttggttcataactttttaat
ttttggttcAGTGGTTCTCAAggcttttgaagtcaaaattcaattttgaa
aaatggcaaaaatcatcaaaaagtggGGTATCAAATTGAATGAACACCAT
AACAAAACATTAATGTTAAACCTTGGATTTTAAAAAGTgttaaaattaat
taattattgTTTTTACGACCTTTAACTATCCTTTTGGGAAGTTTTAGcta
gaaaaaaaaaaggttgaaagattTCTTAGGGGCCACCTGAGCCACCTGAA
GCATAATCTTGAATTTTCAACAACAGATAATCTAAAATGCTTTTGATAGT
ATTGTATTTATGGTAGAGCTCGCGGTCGAAGACTTAATTACTTAAAAGTG
CCACGAGACTatatacttttgtttttttgcctaatttagactgaatttta
ttttgaatatcgAACATTTCTCATAGAAACTTCAGCCAAATTCGTACCTG
CCCAGTACAAAAATCCTCTGGAACTCATTATCTTCGAGAAAAGTAGTCCA
GCTTTGCCGCATTCCATCAACCAATGTGTCAATAATTGTCTTGCACATTA
TCTCAAATGCCAGTatgtattttaaaaaaaatcatataacTGTCCTTCCA
TGCTTTACTAAAATACGTCATAAAATGACCTCCCAAATCCTTTCTTATGG
AATTTCTAAAACTATTTTTTAACGAGAAGGAACTTTCGTGAGTCAGGTTC
TCAAAATACTTCACAGAATTAACTTTTGCGAAATACCCGAAAATTTATCA
tcttaatgtggagatttttctaagaaatcttATGAAAATTTCGTTGCCAG
TGAACTCGGTGGATTCTATTAATAAAGGGTCTATTCAATTATTTCAGGAA
GAACGATCGAACCATAtagaatgaagaaaaaagaaaaggagtGAAGACCG
ATGAAGGGACAACTGGTAGGCATATccttttctttcttgtttttcttcAT
TCTTCCTTAATACTGTTTTTTTATTAATGGTGTTTGGTAACTTGTCACTG
GTCTGTAAGTTCTAGTCTACAAACGCAAGCGTGCTTACTAAATTCGTCGA
TGAGAAAGTCTCTCCATGTCTTAATACAATGTTTCATTCAAATGGGCTGA
CAAATATGAAATACATTTTCTGAACCGGTAAACTGCGAACGAACTACTTA
GTCCAGGAATAGTTGGAAACCTTTTTCATATATTTCTGCGGTTCTTGTCA
CTGTCTTAGATtaatttaataatttgattattCTTTAAGATtccttttca
aataaaaatggctACCTTTCCATGTCAGTGTTCATTCTTTGTCTACAAAA
TCAGATGCTGTTACGTTTTTCTTCGCGCTCTTAGGTGTTATGTAATCATA
CCGTCAGGTTTTATATGGCATTCATATCGAGTCTTTAAATCGGAATCGTC
GAATAATAACTTGTCACGATCAATAATTAAATATTCATTTAGTCGGTCCT
GCTAGGAATCGGACAGAACATATgcgtatttaaaaaaataagcgcTGAGG
GCTaggtagcctatactagacgtcacccgcgtttttttacgcaattaacg
tcaattaacgagatgaaaaatcccggtttttagtgaggtgctcgctaagg
GCTAAGATAACATCTCTTTGTTGCCAagtaaatttcaaaagtttcgatcT
TCCCTGTTTTGGAAAGGCACAAAGTTCGTCTCCACGTTCTTCGGGCTATG
ACGTCGATGCACTCTCAGCAACTACAAATTTGTGATGGTTTTGAATTTGG
TGTTATTTGAAATCCGTATAAGCCGCTGGCACCCACTATTCTTCAGACGA
ATATCTCAATGTCAGCCCCGTTCCGCATAGCCATGTCTTTATAGCCGCTG
ATACCAAATATGCCGGCTTTGTCTCCATTCCGCAAAAAATAGTATAGCAA
GAATGTTGCACGTTATcgtaaaattgaaataaaatacatcttatatattt
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042193XLOC_042193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067564-exon-scaffold_471-1491911889:271461..271505TCONS_00067564-exon-scaffold_471-1491911889:271461..271505Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1510915933:271461..271505TCONS_00067564-exon-scaffold_471-1510915933:271461..271505Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1575043694:271461..271505TCONS_00067564-exon-scaffold_471-1575043694:271461..271505Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1491911889:271739..271896TCONS_00067564-exon-scaffold_471-1491911889:271739..271896Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1510915933:271739..271896TCONS_00067564-exon-scaffold_471-1510915933:271739..271896Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1575043694:271739..271896TCONS_00067564-exon-scaffold_471-1575043694:271739..271896Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1491911889:272964..273054TCONS_00067564-exon-scaffold_471-1491911889:272964..273054Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1510915933:272964..273054TCONS_00067564-exon-scaffold_471-1510915933:272964..273054Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1575043694:272964..273054TCONS_00067564-exon-scaffold_471-1575043694:272964..273054Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1491911889:273383..273449TCONS_00067564-exon-scaffold_471-1491911889:273383..273449Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1510915933:273383..273449TCONS_00067564-exon-scaffold_471-1510915933:273383..273449Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1575043694:273383..273449TCONS_00067564-exon-scaffold_471-1575043694:273383..273449Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1491911889:274187..274322TCONS_00067564-exon-scaffold_471-1491911889:274187..274322Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1510915933:274187..274322TCONS_00067564-exon-scaffold_471-1510915933:274187..274322Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1575043694:274187..274322TCONS_00067564-exon-scaffold_471-1575043694:274187..274322Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1491911889:274608..275711TCONS_00067564-exon-scaffold_471-1491911889:274608..275711Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1510915933:274608..275711TCONS_00067564-exon-scaffold_471-1510915933:274608..275711Clytia hemisphaericaexon
TCONS_00067564-exon-scaffold_471-1575043694:274608..275711TCONS_00067564-exon-scaffold_471-1575043694:274608..275711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_471supercontigscaffold_471:271461..275711 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.374847	0.446949	0.306643	0.550418	0.158937	0.173868	0.187038	0.263664	0.203714	0.0906141	0.283678	0.222432	0.206244	0.214941	0.189538	0.173781	0.459305	0.186492	0.24645	0.225829	0.410502	0.458882	0.200256	0.140094	0.225902	0.337407	0.496236	0.380236	0.277788	0.727296
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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