TCONS_00067550 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067550
Unique Name	TCONS_00067550
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	873

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_471:161166..166163+

transcript sequence

>TCONS_00067550 ID=TCONS_00067550|Name=TCONS_00067550|organism=Clytia hemisphaerica|type=transcript|length=873bp
gcttatgagaaaaataaaactgCTTATGTTATGCGCCATCcattatttac
tttgtaagaactaaaacgtaaaaatcaatacaagtcacaacaaaatagat
aaaacgaTAGGTGCGCGCGAGGATTTTTTAACCGcggcggcccgctcaga
atcgaaagaaacaacatcatcaacatcatgaacatgaatatttttctgac
GAACAAGCCCACTACGTGAAGTAACacaagcccctgcggggcaattaTTC
GATATAATAAGGTAGTAGTTGTGTAACTGTTCATCTTTTACCAATCGAGC
CTCATTGCTTGTCTGGAAGAAGTCTTTTGTAAATCCTTTATAACTTTGTG
TACAGTGTTATATGGATGGCCGCCAATACATTGTTTTGACTTAATTCAAA
ATTCTTAATTTGAATGAGCGCACATCCCCTTCATTACCGAAGCATTGTTT
GGACTGATTGGTGTATGTAAATTTTGGTCCGTTTATTTGGTCACTGTCGA
GTACTAGATTCTTAAAAGGTCTTTCTTCTGAATTGATGTTTGGATCAGAG
GTTGTGCCATTGGGACAATTGAGCTGTACACCAGggatttttgcataaaa
aaTCATCGAGTCTTGTTTAGGTCTTTTGTCAGTTTTGGCAGTGAAATAAT
CTACTGCTTCGTATCTATCAAACGCATTCACCCTCCTCGTTGTGAATTCA
TACCATACGCCATCAGACTCACGAATGCACCAGAAAAGATATTGATCGAT
TGGGATCACTCTATCCATTGCTTGTAAGAAAGAGGTGTGTGCGCGGAAAA
ATGAAGTACTGATGTCTAGTCCGTCCGCGAAATCCTCTGCATGCAATTCA
CGGACTTTGGAAGCATAACTCGC

Run BLAST on NCBI

transcript from alignment at scaffold_471:161166..166163+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067550 ID=TCONS_00067550|Name=TCONS_00067550|organism=Clytia hemisphaerica|type=transcript|length=4998bp|location=Sequence derived from alignment at scaffold_471:161166..166163+ (Clytia hemisphaerica)
gcttatgagaaaaataaaactgCTTATGTTATGCGCCATCcattatttac
tttgtaagaactaaaacgtaaaaatcaatacaagtcacaacaaaatagat
aaaacgaTAGGTGCGCGCGAGGATTTTTTAACCGcggcggcccgctcaga
atcgaaagaaacaacatcatcaacatcatgaacatgaatatttttctgac
GAACAAGCCCACTACGTGAAGTAACacaagcccctgcggggcaattaTTC
GATATAATAAGGTAGTAGTTGTGTAACTGTTCATCTTTTACCAATCGAGC
CTCATTGCTTGTCTGGAAGAAGTCTTTTGTAAATCCTTTATAACTTTGTG
TACAGTGTTATATGGATGGCCGCCAATACATTGTTTTGACTTAATTCAAA
ATTCTTAATTTGAATGAGCGCACATCCCCTTCATTACCGAAGCATTGTTT
GGACTGATTGGTGTATGTAAATTTTGGTCCGTTTATTTGGTCACTGTCGA
GTACTAGATTCTTAAAAGGTCTTTCTTCTGAATTGATGTTTGGATCAGAG
GTTGTGCCATTGGGACAATTGAGCTGTACACCAGggatttttgcataaaa
aagcatCAAGTCTTGTTTAGGTCTTTCGTCAGTTTTGGCAGTGAAATAAT
CTACTGTTTCGTAATTATCAAACGCATTCATACTCCTTGTTGTGAATTCA
TACCATACGCCATCAGAGTCACGAATGCACCAGAAAAGATATTGATCGAT
TGGGATCACTCTATCCATTGCTTGTAAGAAAGAGGTGTGTGCGCGGAAAA
ATGAAGTACTGATGTCTAGTCCGTCCGCGAAATCCTCTGCATGCAATTCA
CGGACTTTGGAAGCATAACTCGCTGCATTGGATGCTACCATGTATTGACC
TAAATAAAGAAAGAGGAGCAAAATATGAACATTTTCATATACAACAAGTT
AATACATAAAGAAGTACCACGAACCTCTTAAATATAAGCTATTGAAACAA
ACTGTACGAATTTTATCCAAAGAATCGAAGNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNTGCAATTTATTCTGCTTCTCTTAC
TAAAATTAACTTTACACCTAGtctaatttttgctaaattcagcTCATTTT
GAGACCTAGGAACATAAAATAACCTCGTGAAGTTCTGTTCAATTGTGTAT
CAAACATTAATGATAACTTATTTGATGTTCAAAACCTTTTCAGGGTCCAG
AATCGAgcaaatatttaatattttccgttaaaatgctaaaatactgcTCG
TTTTTGGTCCATTTAACTATGACAAAGATCACAGAAAAGACTTTTTAAGC
TTCGTGAATGATCCAATCATCAAATAGCGCCTAAATGAGCTATGAAATAA
CAATAACCTTcgggttttcaaattttagcataaAGACATGGCCTTCAAGA
ACTCTGTGTCCAGTCAATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATACATAATAT
CAATATCAtagttcttttgtgtttatcttaacTGTGCTGGTGGATTAAAA
AAAGCCACACCCAATGCTAAAAACATGCTCATANGGGGCAATTATTCGAT
ATAATAAGGTAGTAGTTGTGTAACTGTTCATCTTTTACCAATCGAGCCTC
ATTGCTTGTCTGAGAGAAGTCTTTTGTAAATCCTTTATAATTTTGTGTAC
TGTGTTATATGGATGGCTGCCAATACATTGTTTTGACTTAATTCAAAATT
CTTAATTTGAATGAGCGCACATCCCCTTCATTACCGAAGCATTGTTTGGA
CTGATTGGTGTATGTAAATTTTGGTCCGTTTATTTGGTCACTGTCGAGTA
CTAGATTCTTAAAAGGTCTTTCTTCTGAATTGATGTTTGGATCAGAGGTT
GTGCCATTGGGACAATTGAGCTGTACACCAGggatttttgcataaaaaag
catCAAGTCTTGTTTAGGTCTTTCGTCAGTTTTGGCAGTGAAATAATCTA
CTGTTTCGTAATTATCAAACGCATTCATACTCCTTGTTGTGAATTCATAC
CATACGCCATCAGAGTCACGAATGCNGTCATCGAGTCTTGTTTAGGTCTT
TTGTCAGTTTTGGCAGTGAAATAATCTACTGCTTCGTATCTATCAAACGC
ATTCACCCTCCTCGTTGTGAATTCATACCATACGCCATCAGACTCACGAA
TGCACCAGAAAAGATATTGATCGATTGGGATCACTCTATCCATTGCTTGT
AAGAAAGAGGTGTGTGCGCGGAAAAATGAAGTACTGATGTCTAGTCCGTC
CGCGAAATCCTCTGCATGCAATTCACGGACTTTGGAAGCATAACTCGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042189	XLOC_042189	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00067550-exon-scaffold_471-1491911889:161166..161767	TCONS_00067550-exon-scaffold_471-1491911889:161166..161767	Clytia hemisphaerica	exon
TCONS_00067550-exon-scaffold_471-1510915933:161166..161767	TCONS_00067550-exon-scaffold_471-1510915933:161166..161767	Clytia hemisphaerica	exon
TCONS_00067550-exon-scaffold_471-1575043694:161166..161767	TCONS_00067550-exon-scaffold_471-1575043694:161166..161767	Clytia hemisphaerica	exon
TCONS_00067550-exon-scaffold_471-1491911889:165893..166163	TCONS_00067550-exon-scaffold_471-1491911889:165893..166163	Clytia hemisphaerica	exon
TCONS_00067550-exon-scaffold_471-1510915933:165893..166163	TCONS_00067550-exon-scaffold_471-1510915933:165893..166163	Clytia hemisphaerica	exon
TCONS_00067550-exon-scaffold_471-1575043694:165893..166163	TCONS_00067550-exon-scaffold_471-1575043694:165893..166163	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_471	supercontig	scaffold_471:161166..166163 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.29763	0.156309	0.18149	0.295932	0.144108	0.341627	0.657966	0.584171	0.180099	0.223082	0.27066	0.24909	3.10191	3.08221	1.4001	0.96567	0.458136	0.452225	1.92907	3.2267	1.77471	1.26058	0.967298	0.993073	0.602514	0.838935	0.615454	0.879784	0.889553	0.438098

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00067550 vs. Swiss-Prot (Human)

BLAST of TCONS_00067550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00067550 (transcript) - C. hemisphaerica