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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067549 ID=TCONS_00067549|Name=TCONS_00067549|organism=Clytia hemisphaerica|type=transcript|length=1900bp
GGGACTTCGAAACTCTAATGGACCTATATAGTTTTTACTTGCCCTAGGAA
CTCTAAATGATTTTGTAATGAGATTAAACTTTTGCAATAGCTACTCTAGG
TTCATCAAAGTCAGGATAATCGCTTAATCAATGACAATGTCTTTTTGACA
TTCAAATAACGCCCTATGTCTTTTTACAAGCCTCCTTCCAAGAGAAAACT
ACCTAGTCAAGGTTGTAAATGGTGTGATGAAAAGGAGAGGTCTTATCATA
TAAAAATTCCGCACAGTTGAGTGACAGTTAGACCAGGGTGAAGTTACGAA
ATCTTTCCTCAAGATTTGTAAATATACGATAGTGATTTCACAATTCAAAC
AATACTCTAGAGATTCTTCCTTTTttacttctttcttttttctctctttt
cttcTTCGATTAATTTATTAATAAAGTTGAACTTTAAACAAAGCAGTCAA
AcccaaacatgaaaaatatcctGCCAAAACCACGGGTGACGGTAGAGCAA
TGATGTAATCTTTCTTctaaaaatgaactttttttgTGAAGAACAAAAAG
AAGGGAAAGATTAGGATGTTTTCGCCCAGTATGGGATCCCCTTCTTCCCC
AGACCCTATATAAATGGCGATCTTTTAGCTCAGTGAAGTCAGTTAAGTTC
ATCTACTCATACAGTAAAggacagaaaaaaataaatctgAAAACTCAATA
ATCATTGAAACAAATCGCTCATCaaatcatagaaaaaaattaaataacat
CAACGACTGGATCAAATAAAAATGCAGAAACCAAGCGGCGAAACATCTTT
ATTGATATCGATTTTTGCAATGCTGGCGACACTGGACATTGTTGCATCTT
TAGCGGGTCCTCTGCAACATGGCAATGGACAGTCTGGCAAAACTGTCGTC
ATACAAACTACACAACCACGCATCACAACACCCAAAACGattttatcaaG
TTTCGAAAAATTATGTGCAAATCAACCCGAATGGTGTCGAAAACGAATGT
TAAACAACAAACTGAGAATGAAGCATTCATCCGACCAACGATCCAGGAGA
CATTTGTTGACCAGTCAATACATTTTATCACACAAACGAAGAACTCAATC
ATCCTCTACGGTGGACAGGAAAACCCAACGCAATATCAACCAAAAATTAC
AAAGATTAGCAACGATGCAAAGGACTTATGACTATATTAGGGAGAACAAT
AAAATCATAAAACGTCTTCAAAAGTTCGTCAAGAAGGAATTCAGTTGAAT
TGCAGGAAATTGGTGCAAAATAAATTAGCCAATGTTGATTGATGTCTAAA
CATTGACAATATAACTCTATGCTGGTGAAACATGTTCCCCCATGATAATG
AAACAGTGGTACAAACTGCTATATGGGTTCTATATCCATGTTTCAGAGGG
CTTCTATTACCAACCAATTTCACGGAGAAAAGTTTATTCTTATTAGAACC
TAACAGGCTAGTTTGGACTTCCTCGTACAGAATTTATGGGTATTTTATTA
ATGGGTGATTTTTTTTGGGGAAGATGATAATGataatatttttaataaaa
gaCGCAGTTGTTTATATTATGTGTGTTAATGGGtgataaaattttaatat
aTGACAAAGTTTATATAATAGTAAGACATAGTGGCAATTTAGGAATAGGG
TTGGGATTCTTTTGACGGAGTTGTAGCTGTAAGTTTTGGCAACACTCTCC
CACCATGCATCAGTTTTACAACTCACAGTTTTGACCTGTACTAAAGAAGT
AGAGCTATTATATCAAGTTATTACATATTTTAACACCttaagtaaatttt
ttttaaacaaaagatttgtaaatatTCATATCAAGAAGTATGACGCAGAG
AAAATATAAGGATTTAATTTTAGGTAAACTattaaaattagaaataaaat Run BLAST on NCBI transcript from alignment at scaffold_471:125695..127968+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067549 ID=TCONS_00067549|Name=TCONS_00067549|organism=Clytia hemisphaerica|type=transcript|length=2274bp|location=Sequence derived from alignment at scaffold_471:125695..127968+ (Clytia hemisphaerica)
GGGACTTCGAAACTCTAATGGACCTATATAGTTTTTACTTGCCCTAGGAA
CTCTAAATGATTTTGTAATGAGATTAAACTTTTGCAATAGCTACTCTAGG
TTCATCAAAGTCAGGATAATCGCTTAATCAATGACAATGTCTTTTTGACA
TTCAAATAACGCCCTATGTCTTTTTACAAGCCTCCTTCCAAGAGAAAACT
ACCTAGTCAAGGTTGTAAATGGTGTGATGAAAAGGAGAGGTCTTATCATA
TAAAAATTCCGCACAGTTGAGTGACAGTTAGACCAGGGTGAAGTTACGAA
ATCTTTCCTCAAGATTTGTAAATATACGATAGTGATTTCACAATTCAAAC
AATACTCTAGAGATTCTTCCTTTTttacttctttcttttttctctctttt
cttcTTCGATTAATTTATTAATAAAGTTGAACTTTAAACAAAGCAGTCAA
AcccaaacatgaaaaatatcctGCCAAAACCACGGGTGACGGTAGAGCAA
TGATGTAATCTTTCTTctaaaaatgaactttttttgTGAAGAACAAAAAG
AAGGGAAAGATTAGGATGTTTTCGCCCAGTATGGGATCCCCTTCTTCCCC
AGACCCTATATAAATGGCGATCTTTTAGCTCAGTGAAGTCAGTTAAGTTC
ATCTACTCATACAGTAAAggacagaaaaaaataaatctgAAAACTCAATA
ATCATTGAAACAAATCGCTCATCaaatcatagaaaaaaattaaataacat
CAACGACTGGATCAAATAAAAATGCAGAAACCAAGCGGCGAAACATCTTT
ATTGATATCGATTTTTGCAATGCTGGCGACACTGGACATTGTTGCATCTT
TAGCGGGTCCTCTGCAACATGGCAATGGACAGTCTGGCAAAACTGTCGTC
ATACAAACTACACAACCACGCATCACAACACCCAAAACGGTAAGCTTTTC
TTCTATTTCCACATGTTAGTTGAACTTTCTTAACTTGAATACTATAATAG
TCGACTCTTCCTAGTTCGAGCTTCAAGGTGCCAACAATGTCTTTGAACAA
GAGAGAGAAAATctcgaattacagagaatattcgaattatggaggtttaa
ttagagagagttgaacGTAATACTCAATGGCAACTTTGGTTGGTTTAATC
TGTGGATATAAAGAATGAAATAATTGATCTTTCTTCACAAAAGAATTATC
GACGTTGGAGATATCCAGTGAAAGGAGTGACCCTGCCCCTACCCCTTCCG
TCATGAAGCTTGTATCAAATTTTCTGTCACTCGCAATaagataatttcaa
ttttattttttagattttatcaaGTTTCGAAAAATTATGTGCAAATCAAC
CCGAATGGTGTCGAAAACGAATGTTAAACAACAAACTGAGAATGAAGCAT
TCATCCGACCAACGATCCAGGAGACATTTGTTGACCAGTCAATACATTTT
ATCACACAAACGAAGAACTCAATCATCCTCTACGGTGGACAGGAAAACCC
AACGCAATATCAACCAAAAATTACAAAGATTAGCAACGATGCAAAGGACT
TATGACTATATTAGGGAGAACAATAAAATCATAAAACGTCTTCAAAAGTT
CGTCAAGAAGGAATTCAGTTGAATTGCAGGAAATTGGTGCAAAATAAATT
AGCCAATGTTGATTGATGTCTAAACATTGACAATATAACTCTATGCTGGT
GAAACATGTTCCCCCATGATAATGAAACAGTGGTACAAACTGCTATATGG
GTTCTATATCCATGTTTCAGAGGGCTTCTATTACCAACCAATTTCACGGA
GAAAAGTTTATTCTTATTAGAACCTAACAGGCTAGTTTGGACTTCCTCGT
ACAGAATTTATGGGTATTTTATTAATGGGTGATTTTTTTTGGGGAAGATG
ATAATGataatatttttaataaaagaCGCAGTTGTTTATATTATGTGTGT
TAATGGGtgataaaattttaatataTGACAAAGTTTATATAATAGTAAGA
CATAGTGGCAATTTAGGAATAGGGTTGGGATTCTTTTGACGGAGTTGTAG
CTGTAAGTTTTGGCAACACTCTCCCACCATGCATCAGTTTTACAACTCAC
AGTTTTGACCTGTACTAAAGAAGTAGAGCTATTATATCAAGTTATTACAT
ATTTTAACACCttaagtaaattttttttaaacaaaagatttgtaaatatT
CATATCAAGAAGTATGACGCAGAGAAAATATAAGGATTTAATTTTAGGTA
AACTattaaaattagaaataaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067549-exon-scaffold_471-1491911889:125695..126633 | TCONS_00067549-exon-scaffold_471-1491911889:125695..126633 | Clytia hemisphaerica | exon |
| TCONS_00067549-exon-scaffold_471-1510915933:125695..126633 | TCONS_00067549-exon-scaffold_471-1510915933:125695..126633 | Clytia hemisphaerica | exon |
| TCONS_00067549-exon-scaffold_471-1575043694:125695..126633 | TCONS_00067549-exon-scaffold_471-1575043694:125695..126633 | Clytia hemisphaerica | exon |
| TCONS_00067549-exon-scaffold_471-1491911889:127008..127968 | TCONS_00067549-exon-scaffold_471-1491911889:127008..127968 | Clytia hemisphaerica | exon |
| TCONS_00067549-exon-scaffold_471-1510915933:127008..127968 | TCONS_00067549-exon-scaffold_471-1510915933:127008..127968 | Clytia hemisphaerica | exon |
| TCONS_00067549-exon-scaffold_471-1575043694:127008..127968 | TCONS_00067549-exon-scaffold_471-1575043694:127008..127968 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_471 | supercontig | scaffold_471:125695..127968 + |
Blast
The following BLAST results are available for this feature:
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