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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067546 ID=TCONS_00067546|Name=TCONS_00067546|organism=Clytia hemisphaerica|type=transcript|length=4069bpRun BLAST on NCBI protein sequence of TCONS_00067546-protein >TCONS_00067546-protein ID=TCONS_00067546-protein|Name=TCONS_00067546-protein|organism=Clytia hemisphaerica|type=polypeptide|length=552bp MAAVKSSSENVFSYEEIDVFTVPHNRMKKILLDVSNQTKKTDFNNQQSFGRun BLAST on NCBI transcript from alignment at scaffold_471:73630..87836+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067546 ID=TCONS_00067546|Name=TCONS_00067546|organism=Clytia hemisphaerica|type=transcript|length=14207bp|location=Sequence derived from alignment at scaffold_471:73630..87836+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_471:73630..87836+ >TCONS_00067546 ID=TCONS_00067546|Name=TCONS_00067546|organism=Clytia hemisphaerica|type=CDS|length=16590bp|location=Sequence derived from alignment at scaffold_471:73630..87836+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067546 vs. Swiss-Prot (Human)
Match: MDR3 (Phosphatidylcholine translocator ABCB4 OS=Homo sapiens GN=ABCB4 PE=1 SV=2) HSP 1 Score: 239.195 bits (609), Expect = 6.345e-64 Identity = 131/243 (53.91%), Postives = 170/243 (69.96%), Query Frame = -2
Query: 3343 GEIVFKDVKFKYPSRPKDQVLKGLNLTIKSNCMTAIVGKSGAGKSTIAKLVTRLYDPSSGSITVDGEDLKSFDVEYFRSNLAVVDQSPELFNRPLAENIAYGMVDSDQCTYAELEAAGKLANC-DFISKFREGYYTFAGYGGNDLSGGQLQXXXXXXXXXRNPKILILDEATSSLDSENEKEVQEALEKLMKGRTVIVIAHRLSTIRNADNIVCMKDGTVVEQGTHDDLMEKKGAYHKLISQQ 4068
G + F DV F YPSR ++LKGLNL ++S A+VG SG GKST +L+ RLYDP G+I +DG+D+++F+V Y R + VV Q P LF+ +AENI YG T E++ A K AN +FI K + + T G G LSGGQ QRIAIARA +RNPKIL+LDEATS+LD+E+E EVQ AL+K +GRT IVIAHRLST+RNAD I +DG +VEQG+H +LM+K+G Y KL++ Q
Sbjct: 392 GNLEFNDVHFSYPSRANVKILKGLNLKVQSGQTVALVGSSGCGKSTTVQLIQRLYDPDEGTINIDGQDIRNFNVNYLREIIGVVSQEPVLFSTTIAENICYG---RGNVTMDEIKKAVKEANAYEFIMKLPQKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELMKKEGVYFKLVNMQ 631 HSP 2 Score: 210.69 bits (535), Expect = 4.544e-55 Identity = 125/250 (50.00%), Postives = 164/250 (65.60%), Query Frame = -2
Query: 3343 GEIVFKDVKFKYPSRPKDQVLKGLNLTIKSNCMTAIVGKSGAGKSTIAKLVTRLYDPSSGSITVD-------GEDLKSFDVEYFRSNLAVVDQSPELFNRPLAENIAYGMVDSDQCTYAELEAAGKLANCD-FISKFREGYYTFAGYGGNDLSGGQLQXXXXXXXXXRNPKILILDEATSSLDSENEKEVQEALEKLMKGRTVIVIAHRLSTIRNADNIVCMKDGTVVEQGTHDDLMEKKGAYHKLISQQ 4068
G I F +V F YP+R VL+GL+L +K A+VG SG GKST+ +L+ R YDP +G++ VD G++ K +V++ R+ L +V Q P LF+ +AENIAYG +S + E+ +A K AN FI Y T G G LSGGQ QRIAIARA IR P+IL+LDEATS+LD+E+EK VQEAL+K +GRT IVIAHRLSTI+NAD IV ++G V E GTH L+ +KG Y ++S Q
Sbjct: 1032 GNITFNEVVFNYPTRANVPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGTVFVDFGFQLLDGQEAKKLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD-NSRVVSQDEIVSAAKAANIHPFIETLPHKYETRVGDKGTQLSGGQKQRIAIARALIRQPQILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMVSVQ 1280 The following BLAST results are available for this feature:
BLAST of TCONS_00067546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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